Wall clock time and date at job start Mon Mar 30 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46909 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47065 * 120.00075 * 3 2 1 7 7 C 1.37871 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 174.20801 * 7 2 1 9 9 C 1.50698 * 120.00630 * 354.20318 * 7 2 1 10 10 H 1.09007 * 109.46650 * 55.39421 * 9 7 2 11 11 C 1.53000 * 109.47230 * 295.39756 * 9 7 2 12 12 N 1.46904 * 109.47074 * 294.89663 * 11 9 7 13 13 C 1.52999 * 109.47294 * 175.39256 * 9 7 2 14 14 N 1.46505 * 109.46739 * 181.47357 * 13 9 7 15 15 C 1.46190 * 123.94695 * 264.37351 * 14 13 9 16 16 C 1.53732 * 107.15498 * 179.82334 * 15 14 13 17 17 H 1.09002 * 117.89842 * 139.44999 * 16 15 14 18 18 C 1.53016 * 118.66271 * 297.53449 * 16 15 14 19 19 C 1.52990 * 60.37854 * 90.16161 * 18 16 15 20 20 H 1.08996 * 119.08472 * 112.60712 * 19 18 16 21 21 C 1.33819 * 123.95476 * 84.67490 * 14 13 9 22 22 O 1.21273 * 124.56930 * 359.87698 * 21 14 13 23 23 H 0.97001 * 120.00107 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47047 * 174.89561 * 11 9 7 25 25 H 1.09008 * 109.47130 * 54.89405 * 11 9 7 26 26 H 1.00895 * 110.99736 * 173.77425 * 12 11 9 27 27 H 1.00900 * 110.99336 * 297.72866 * 12 11 9 28 28 H 1.08999 * 109.47039 * 301.46831 * 13 9 7 29 29 H 1.09000 * 109.47329 * 61.47548 * 13 9 7 30 30 H 1.08992 * 109.90356 * 299.34131 * 15 14 13 31 31 H 1.09001 * 109.90102 * 60.57782 * 15 14 13 32 32 H 1.09000 * 117.46223 * 342.56678 * 18 16 15 33 33 H 1.08997 * 117.46069 * 197.75462 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1964 -0.0939 9 6 1.2570 -2.4958 0.1329 10 1 0.4985 -2.5601 -0.6474 11 6 0.5835 -2.5599 1.5052 12 7 1.6115 -2.5962 2.5540 13 6 2.2359 -3.6629 -0.0098 14 7 1.5038 -4.9284 0.0837 15 6 1.3630 -5.7009 1.3169 16 6 0.5259 -6.9454 0.9794 17 1 0.8211 -7.8950 1.4257 18 6 -0.9109 -6.7527 0.4897 19 6 0.2333 -6.8033 -0.5246 20 1 0.2946 -7.6465 -1.2126 21 6 0.8905 -5.5154 -0.9507 22 8 0.8669 -5.0712 -2.0789 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0305 -3.4584 1.5670 25 1 -0.0451 -1.6800 1.6429 26 1 1.1948 -2.5365 3.4709 27 1 2.1844 -3.4225 2.4702 28 1 2.7347 -3.6025 -0.9771 29 1 2.9790 -3.6133 0.7860 30 1 2.3456 -6.0000 1.6815 31 1 0.8502 -5.1048 2.0717 32 1 -1.3786 -5.7851 0.6719 33 1 -1.5781 -7.6132 0.5380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:04 Heat of formation + Delta-G solvation = 3.166148 kcal Electronic energy + Delta-G solvation = -16013.988497 eV Core-core repulsion = 13461.753631 eV Total energy + Delta-G solvation = -2552.234866 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72500 -36.64729 -36.13285 -33.36630 -31.95251 -29.51069 -27.21628 -25.62322 -23.95752 -22.92309 -21.04019 -19.85174 -18.42264 -16.51058 -16.37846 -15.42123 -15.23363 -14.95339 -14.43254 -13.91909 -13.64307 -13.45248 -13.10222 -12.54943 -12.35979 -11.95552 -11.79487 -11.39673 -10.84478 -10.73814 -10.47427 -10.39410 -10.32401 -9.77735 -9.69799 -9.32763 -9.02485 -8.27873 -8.01215 -7.53217 -5.90291 -3.90228 2.78616 3.41823 3.42607 3.45189 3.51218 3.72896 4.41493 4.53590 4.56859 4.81012 4.86448 5.33516 5.44729 5.57520 5.59111 5.62684 5.70029 5.83208 6.01360 6.04966 6.39595 6.47984 6.74876 6.91528 7.01137 7.55590 7.71698 7.78857 8.06042 8.21069 8.36465 8.50571 8.69807 9.07238 9.71172 11.19485 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.008124 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.222812 B = 3445.897153 C = 3655.730712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.485 4.485 8 H 0.053 0.947 9 C 0.038 3.962 10 H 0.038 0.962 11 C 0.077 3.923 12 N -0.831 5.831 13 C 0.129 3.871 14 N -0.605 5.605 15 C 0.125 3.875 16 C -0.168 4.168 17 H 0.131 0.869 18 C -0.121 4.121 19 C -0.202 4.202 20 H 0.134 0.866 21 C 0.535 3.465 22 O -0.528 6.528 23 H 0.258 0.742 24 H -0.018 1.018 25 H 0.087 0.913 26 H 0.318 0.682 27 H 0.316 0.684 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -13.622 5.817 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.056 0.944 11 C -0.053 4.053 12 N -0.359 5.359 13 C 0.009 3.991 14 N -0.338 5.338 15 C 0.001 3.999 16 C -0.187 4.187 17 H 0.149 0.851 18 C -0.159 4.159 19 C -0.223 4.223 20 H 0.152 0.848 21 C 0.321 3.679 22 O -0.405 6.405 23 H 0.068 0.932 24 H -0.001 1.001 25 H 0.106 0.894 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.506 -12.483 4.864 13.406 hybrid contribution -0.049 -0.030 0.435 0.439 sum 0.456 -12.513 5.299 13.596 Atomic orbital electron populations 1.69917 1.05930 1.26417 1.51415 1.24846 0.94745 0.98918 0.95221 0.86642 0.79537 0.83212 0.78424 1.20562 1.21643 1.20265 1.20724 0.92964 0.89866 1.48779 0.92827 1.19071 0.94378 0.91718 0.92974 0.94367 1.21875 0.92248 0.97870 0.93355 1.58693 1.26525 1.45618 1.05102 1.21876 0.94991 0.80528 1.01677 1.48189 1.53484 1.23625 1.08467 1.21312 0.99325 0.91005 0.88263 1.23374 0.98243 1.00108 0.96974 0.85120 1.22884 0.90198 1.04304 0.98505 1.23110 1.05448 1.00223 0.93519 0.84817 1.19499 0.79151 0.84357 0.84869 1.90709 1.61298 1.67970 1.20534 0.93187 1.00051 0.89446 0.87205 0.87203 0.91115 0.90834 0.90571 0.90603 0.88195 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 11.92 55.43 0.66 -25.76 16 2 C 0.06 1.79 5.22 -17.82 -0.09 1.70 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.48 -13.43 8.23 -34.44 -0.28 -13.71 16 8 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 9 C 0.04 0.96 2.23 -91.77 -0.21 0.75 16 10 H 0.04 1.13 8.13 -51.93 -0.42 0.71 16 11 C 0.08 1.73 5.60 -3.82 -0.02 1.71 16 12 N -0.83 -15.98 9.04 -10.36 -0.09 -16.08 16 13 C 0.13 2.70 4.82 -4.04 -0.02 2.68 16 14 N -0.60 -10.85 2.50 -173.75 -0.44 -11.29 16 15 C 0.12 1.64 6.04 -3.83 -0.02 1.62 16 16 C -0.17 -1.84 7.18 -89.77 -0.64 -2.48 16 17 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 18 C -0.12 -1.38 10.11 -26.73 -0.27 -1.66 16 19 C -0.20 -2.79 6.96 -91.30 -0.64 -3.42 16 20 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 21 C 0.53 10.36 7.83 -11.40 -0.09 10.27 16 22 O -0.53 -12.70 17.59 5.56 0.10 -12.61 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H -0.02 -0.39 6.29 -51.93 -0.33 -0.71 16 25 H 0.09 2.30 6.58 -51.92 -0.34 1.96 16 26 H 0.32 5.33 9.08 -39.29 -0.36 4.97 16 27 H 0.32 5.31 5.87 -39.29 -0.23 5.08 16 28 H 0.07 1.60 8.00 -51.93 -0.42 1.18 16 29 H 0.07 1.41 6.56 -51.93 -0.34 1.07 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.02 5.71 -51.93 -0.30 0.73 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 269.13 15.07 4.06 4.06 Total: -1.00 -32.68 269.13 -7.41 -40.08 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.39 Total: 7.04 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.29 Total: -2.54 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.13 Total: -53.13 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.10 Total: -12.61 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.68 -7.41 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.249 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds