Wall clock time and date at job start Mon Mar 30 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99626 * 2 1 4 4 H 1.48500 * 109.46909 * 239.99725 * 3 2 1 5 5 H 1.48498 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47065 * 120.00075 * 3 2 1 7 7 C 1.37871 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 174.20801 * 7 2 1 9 9 C 1.50698 * 120.00630 * 354.20318 * 7 2 1 10 10 H 1.09007 * 109.46650 * 55.39421 * 9 7 2 11 11 C 1.53000 * 109.47230 * 295.39756 * 9 7 2 12 12 N 1.46904 * 109.47074 * 294.89663 * 11 9 7 13 13 C 1.52999 * 109.47294 * 175.39256 * 9 7 2 14 14 N 1.46505 * 109.46739 * 181.47357 * 13 9 7 15 15 C 1.46190 * 123.94695 * 264.37351 * 14 13 9 16 16 C 1.53732 * 107.15498 * 179.82334 * 15 14 13 17 17 H 1.09002 * 117.89842 * 139.44999 * 16 15 14 18 18 C 1.53016 * 118.66271 * 297.53449 * 16 15 14 19 19 C 1.52990 * 60.37854 * 90.16161 * 18 16 15 20 20 H 1.08996 * 119.08472 * 112.60712 * 19 18 16 21 21 C 1.33819 * 123.95476 * 84.67490 * 14 13 9 22 22 O 1.21273 * 124.56930 * 359.87698 * 21 14 13 23 23 H 0.97001 * 120.00107 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47047 * 174.89561 * 11 9 7 25 25 H 1.09008 * 109.47130 * 54.89405 * 11 9 7 26 26 H 1.00895 * 110.99736 * 173.77425 * 12 11 9 27 27 H 1.00900 * 110.99336 * 297.72866 * 12 11 9 28 28 H 1.08999 * 109.47039 * 301.46831 * 13 9 7 29 29 H 1.09000 * 109.47329 * 61.47548 * 13 9 7 30 30 H 1.08992 * 109.90356 * 299.34131 * 15 14 13 31 31 H 1.09001 * 109.90102 * 60.57782 * 15 14 13 32 32 H 1.09000 * 117.46223 * 342.56678 * 18 16 15 33 33 H 1.08997 * 117.46069 * 197.75462 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1964 -0.0939 9 6 1.2570 -2.4958 0.1329 10 1 0.4985 -2.5601 -0.6474 11 6 0.5835 -2.5599 1.5052 12 7 1.6115 -2.5962 2.5540 13 6 2.2359 -3.6629 -0.0098 14 7 1.5038 -4.9284 0.0837 15 6 1.3630 -5.7009 1.3169 16 6 0.5259 -6.9454 0.9794 17 1 0.8211 -7.8950 1.4257 18 6 -0.9109 -6.7527 0.4897 19 6 0.2333 -6.8033 -0.5246 20 1 0.2946 -7.6465 -1.2126 21 6 0.8905 -5.5154 -0.9507 22 8 0.8669 -5.0712 -2.0789 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0305 -3.4584 1.5670 25 1 -0.0451 -1.6800 1.6429 26 1 1.1948 -2.5365 3.4709 27 1 2.1844 -3.4225 2.4702 28 1 2.7347 -3.6025 -0.9771 29 1 2.9790 -3.6133 0.7860 30 1 2.3456 -6.0000 1.6815 31 1 0.8502 -5.1048 2.0717 32 1 -1.3786 -5.7851 0.6719 33 1 -1.5781 -7.6132 0.5380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:04 Heat of formation + Delta-G solvation = -21.264780 kcal Electronic energy + Delta-G solvation = -16015.047902 eV Core-core repulsion = 13461.753631 eV Total energy + Delta-G solvation = -2553.294271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01231 -38.08420 -37.88320 -34.94621 -33.91196 -31.25727 -28.45585 -27.36275 -25.92753 -24.19878 -22.11705 -21.48457 -19.96692 -18.41932 -17.71143 -17.09986 -16.80921 -16.54084 -16.20780 -15.35127 -15.16492 -14.85779 -14.57306 -14.29080 -13.77628 -13.51080 -13.42416 -12.84880 -12.74244 -12.55229 -12.32090 -11.79305 -11.72154 -11.45057 -11.31576 -11.18012 -10.63239 -10.45334 -9.57960 -9.17858 -8.07821 -6.14946 1.41830 1.44756 1.45088 1.51731 2.07962 2.49137 2.63625 3.24966 3.35461 3.56241 3.80962 3.87864 4.04904 4.29907 4.38952 4.49683 4.55423 4.66983 4.71769 4.85493 4.89371 4.92374 5.05297 5.17020 5.43082 5.62683 5.70530 5.98380 6.25157 6.30924 6.63324 6.87139 6.96162 7.20889 7.49964 9.00904 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.008124 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.222812 B = 3445.897153 C = 3655.730712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.053 0.947 9 C 0.040 3.960 10 H -0.023 1.023 11 C 0.098 3.902 12 N -0.832 5.832 13 C 0.142 3.858 14 N -0.607 5.607 15 C 0.110 3.890 16 C -0.130 4.130 17 H 0.180 0.820 18 C -0.114 4.114 19 C -0.222 4.222 20 H 0.153 0.847 21 C 0.513 3.487 22 O -0.595 6.595 23 H 0.257 0.743 24 H -0.004 1.004 25 H 0.047 0.953 26 H 0.337 0.663 27 H 0.334 0.666 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -15.607 8.206 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.020 3.980 10 H -0.005 1.005 11 C -0.033 4.033 12 N -0.364 5.364 13 C 0.021 3.979 14 N -0.338 5.338 15 C -0.012 4.012 16 C -0.148 4.148 17 H 0.198 0.802 18 C -0.151 4.151 19 C -0.244 4.244 20 H 0.171 0.829 21 C 0.302 3.698 22 O -0.477 6.477 23 H 0.066 0.934 24 H 0.014 0.986 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.327 -14.504 7.316 16.298 hybrid contribution -0.311 0.581 -0.301 0.725 sum 1.016 -13.923 7.015 15.623 Atomic orbital electron populations 1.70070 1.07368 1.26971 1.52439 1.25647 0.95523 1.02357 0.95107 0.85648 0.78311 0.79137 0.78686 1.20193 1.21445 1.19228 1.21091 0.93126 0.91246 1.48314 0.92848 1.18917 0.93604 0.92800 0.92668 1.00456 1.21369 0.92367 0.96712 0.92847 1.58459 1.25818 1.46922 1.05192 1.21433 0.94400 0.81000 1.01077 1.48253 1.52445 1.22727 1.10348 1.21753 1.01950 0.91591 0.85902 1.23643 0.96981 1.00624 0.93558 0.80230 1.23088 0.90823 1.04713 0.96514 1.22998 1.08018 0.97452 0.95888 0.82933 1.20631 0.78871 0.86102 0.84190 1.90652 1.63633 1.70148 1.23292 0.93404 0.98572 0.93408 0.85074 0.85156 0.93910 0.88320 0.87126 0.90563 0.90800 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 11.92 21.45 0.26 -56.36 16 2 C 0.01 0.63 5.22 84.65 0.44 1.07 16 3 Si 0.96 45.96 29.54 68.60 2.03 47.98 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.50 -28.37 8.23 25.60 0.21 -28.16 16 8 H 0.05 2.97 7.75 -2.91 -0.02 2.94 16 9 C 0.04 2.08 2.23 -11.54 -0.03 2.05 16 10 H -0.02 -1.45 8.13 -2.38 -0.02 -1.47 16 11 C 0.10 4.47 5.60 86.30 0.48 4.96 16 12 N -0.83 -30.53 9.04 -186.70 -1.69 -32.22 16 13 C 0.14 6.06 4.82 86.38 0.42 6.48 16 14 N -0.61 -21.54 2.50 -822.55 -2.06 -23.60 16 15 C 0.11 2.51 6.04 86.68 0.52 3.03 16 16 C -0.13 -2.22 7.18 -10.25 -0.07 -2.29 16 17 H 0.18 1.47 8.14 -2.39 -0.02 1.45 16 18 C -0.11 -2.23 10.11 30.60 0.31 -1.92 16 19 C -0.22 -5.69 6.96 -11.24 -0.08 -5.76 16 20 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 21 C 0.51 20.27 7.83 87.82 0.69 20.96 16 22 O -0.60 -30.53 17.59 -3.01 -0.05 -30.58 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H 0.00 -0.15 6.29 -2.39 -0.02 -0.16 16 25 H 0.05 2.58 6.58 -2.38 -0.02 2.57 16 26 H 0.34 10.47 9.08 -89.70 -0.81 9.65 16 27 H 0.33 10.26 5.87 -89.69 -0.53 9.73 16 28 H 0.04 2.03 8.00 -2.39 -0.02 2.01 16 29 H 0.10 3.65 6.56 -2.39 -0.02 3.64 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.78 5.71 -2.39 -0.01 1.77 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -77.34 269.13 1.17 -76.18 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.21 Total: 18.18 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 2.89 Total: 0.41 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.49 Total: -112.17 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.58 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.34 1.17 -76.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.911 kcal (2) G-P(sol) polarization free energy of solvation -77.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds