Wall clock time and date at job start Mon Mar 30 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 110.05511 * 2 1 4 4 C 1.54265 * 110.03379 * 121.41844 * 2 1 3 5 5 C 1.54890 * 104.19311 * 142.89315 * 4 2 1 6 6 C 1.54968 * 102.77846 * 322.08365 * 5 4 2 7 7 C 1.53880 * 110.03143 * 238.58794 * 2 1 3 8 8 H 1.08997 * 110.03529 * 121.37739 * 7 2 1 9 9 N 1.46499 * 110.03137 * 359.97438 * 7 2 1 10 10 C 1.36939 * 119.99791 * 110.41546 * 9 7 2 11 11 H 1.08000 * 119.99722 * 204.66663 * 10 9 7 12 12 C 1.38810 * 120.00346 * 24.66389 * 10 9 7 13 13 N 1.31617 * 119.99647 * 30.38953 * 12 10 9 14 14 Si 1.86793 * 120.00297 * 210.38479 * 12 10 9 15 15 H 1.48497 * 109.47387 * 270.00074 * 14 12 10 16 16 H 1.48497 * 109.47011 * 30.00602 * 14 12 10 17 17 H 1.48501 * 109.47126 * 149.99950 * 14 12 10 18 18 C 1.46500 * 120.00056 * 290.41898 * 9 7 2 19 19 C 1.47203 * 109.46646 * 263.69238 * 18 9 7 20 20 N 5.27774 * 83.30162 * 208.59038 * 2 1 3 21 21 H 1.08993 * 109.47303 * 187.29704 * 1 2 3 22 22 H 1.09003 * 109.46754 * 307.29964 * 1 2 3 23 23 H 1.09002 * 109.47352 * 67.29605 * 1 2 3 24 24 H 0.96699 * 113.99929 * 58.58461 * 3 2 1 25 25 H 1.08993 * 110.48398 * 261.57265 * 4 2 1 26 26 H 1.08997 * 110.48389 * 24.08479 * 4 2 1 27 27 H 1.09000 * 110.75421 * 80.37212 * 5 4 2 28 28 H 1.09004 * 110.75065 * 203.55692 * 5 4 2 29 29 H 1.08994 * 110.47595 * 279.23355 * 6 5 4 30 30 H 1.08998 * 110.52502 * 156.56670 * 6 5 4 31 31 H 0.97007 * 119.99700 * 5.76911 * 13 12 10 32 32 H 1.08998 * 109.47340 * 23.69158 * 18 9 7 33 33 H 1.08998 * 109.47571 * 143.69957 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0200 1.3423 0.0000 4 6 2.0585 -0.7555 1.2368 5 6 3.3137 -1.5007 0.7189 6 6 2.8881 -1.9406 -0.7048 7 6 2.0571 -0.7535 -1.2338 8 1 2.6859 -0.0950 -1.8330 9 7 0.9359 -1.2454 -2.0382 10 6 0.6777 -0.6918 -3.2638 11 1 -0.3183 -0.7394 -3.6788 12 6 1.6959 -0.0695 -3.9728 13 7 2.9389 -0.4802 -3.8364 14 14 1.3022 1.3508 -5.1204 15 1 1.0153 0.8245 -6.4790 16 1 0.1145 2.0831 -4.6122 17 1 2.4637 2.2739 -5.1822 18 6 0.0909 -2.3296 -1.5314 19 6 0.5562 -3.6128 -2.0825 20 7 0.9144 -4.6026 -2.5084 21 1 -0.3633 -1.0193 0.1305 22 1 -0.3633 0.6228 0.8175 23 1 -0.3634 0.3966 -0.9480 24 1 1.7224 1.8697 0.7539 25 1 2.3297 -0.0537 2.0254 26 1 1.3134 -1.4644 1.5979 27 1 4.1710 -0.8290 0.6749 28 1 3.5344 -2.3660 1.3441 29 1 2.2783 -2.8428 -0.6588 30 1 3.7643 -2.1027 -1.3325 31 1 3.1336 -1.2693 -3.3068 32 1 0.1504 -2.3584 -0.4435 33 1 -0.9419 -2.1573 -1.8344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306673539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:20 Heat of formation + Delta-G solvation = 4.518454 kcal Electronic energy + Delta-G solvation = -16569.665127 eV Core-core repulsion = 14017.488901 eV Total energy + Delta-G solvation = -2552.176226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32272 -36.16413 -34.92338 -33.75746 -31.63940 -29.51486 -27.86072 -26.51921 -24.42219 -22.32344 -20.45802 -18.95762 -17.79280 -16.88014 -15.86936 -15.25566 -14.84361 -14.27374 -13.88893 -13.48472 -13.06672 -12.92052 -12.59816 -12.22026 -12.01990 -11.83351 -11.48825 -11.17011 -10.93737 -10.77579 -10.69164 -10.52857 -10.38093 -10.11888 -10.01345 -9.75206 -9.47309 -9.27131 -8.49195 -7.16863 -6.23797 -3.40825 3.47866 3.50264 3.58118 3.61862 3.69116 4.52013 4.72824 4.93502 5.00438 5.11376 5.35238 5.39100 5.50443 5.73177 5.82083 5.90952 6.00286 6.11071 6.15913 6.18094 6.21521 6.38354 6.43544 6.59293 6.59843 6.85139 7.01339 7.25690 7.84407 8.30531 8.39696 8.45485 8.89279 9.65606 9.98084 11.03802 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.014284 C = 0.010891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.490751 B = 1959.715132 C = 2570.350295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 O -0.551 6.551 4 C -0.149 4.149 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.168 3.832 8 H 0.121 0.879 9 N -0.563 5.563 10 C -0.369 4.369 11 H 0.068 0.932 12 C -0.010 4.010 13 N -0.894 5.894 14 Si 1.064 2.936 15 H -0.295 1.295 16 H -0.289 1.289 17 H -0.284 1.284 18 C 0.216 3.784 19 C 0.197 3.803 20 N -0.482 5.482 21 H 0.064 0.936 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.359 0.641 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.272 0.728 32 H 0.091 0.909 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 2.288 10.603 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 O -0.355 6.355 4 C -0.187 4.187 5 C -0.158 4.158 6 C -0.175 4.175 7 C 0.061 3.939 8 H 0.138 0.862 9 N -0.282 5.282 10 C -0.497 4.497 11 H 0.085 0.915 12 C -0.215 4.215 13 N -0.533 5.533 14 Si 0.893 3.107 15 H -0.222 1.222 16 H -0.215 1.215 17 H -0.210 1.210 18 C 0.086 3.914 19 C -0.122 4.122 20 N -0.162 5.162 21 H 0.083 0.917 22 H 0.053 0.947 23 H 0.102 0.898 24 H 0.205 0.795 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.534 1.797 8.374 8.932 hybrid contribution -1.033 -0.798 1.622 2.082 sum -3.567 0.999 9.996 10.660 Atomic orbital electron populations 1.22576 0.95768 1.01664 1.02390 1.22612 0.92945 0.82100 0.95741 1.86695 1.75373 1.23601 1.49853 1.23084 0.98087 0.99676 0.97860 1.22391 0.97611 0.99207 0.96549 1.22829 1.00334 0.98861 0.95484 1.21240 0.89020 0.93358 0.90313 0.86186 1.44214 1.33425 1.32572 1.18028 1.19958 0.96240 1.37024 0.96448 0.91467 1.25847 0.93249 1.03096 0.99264 1.70767 1.20632 1.24718 1.37139 0.83572 0.75496 0.76432 0.75187 1.22248 1.21509 1.21009 1.19205 0.96561 0.78552 0.97083 1.31810 0.92788 0.94758 0.92862 1.80946 1.10627 1.14244 1.10347 0.91728 0.94748 0.89796 0.79542 0.92034 0.91549 0.91504 0.92436 0.92177 0.91637 0.91634 0.89123 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 7.44 37.16 0.28 -2.34 16 2 C 0.11 1.90 1.24 -89.50 -0.11 1.79 16 3 O -0.55 -10.01 12.90 -35.23 -0.45 -10.46 16 4 C -0.15 -2.16 6.09 -25.07 -0.15 -2.31 16 5 C -0.12 -1.89 6.91 -24.70 -0.17 -2.06 16 6 C -0.14 -2.64 6.00 -25.03 -0.15 -2.79 16 7 C 0.17 3.59 1.99 -66.81 -0.13 3.45 16 8 H 0.12 3.14 5.13 -51.93 -0.27 2.87 16 9 N -0.56 -12.40 1.19 -167.70 -0.20 -12.60 16 10 C -0.37 -9.41 9.14 -15.06 -0.14 -9.55 16 11 H 0.07 1.70 7.99 -52.49 -0.42 1.29 16 12 C -0.01 -0.28 4.67 -17.43 -0.08 -0.36 16 13 N -0.89 -25.87 12.06 55.49 0.67 -25.20 16 14 Si 1.06 24.62 30.01 -169.99 -5.10 19.52 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.22 3.93 3.76 -6.83 -0.03 3.91 16 19 C 0.20 4.11 14.02 -20.78 -0.29 3.82 16 20 N -0.48 -10.98 18.53 42.13 0.78 -10.20 16 21 H 0.06 0.91 4.65 -51.93 -0.24 0.67 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16 24 H 0.36 4.68 9.07 45.56 0.41 5.09 16 25 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 26 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.15 5.25 -51.93 -0.27 0.88 16 30 H 0.06 1.39 7.70 -51.93 -0.40 0.99 16 31 H 0.27 7.94 6.47 -40.82 -0.26 7.68 16 32 H 0.09 1.38 5.52 -51.93 -0.29 1.09 16 33 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -30.61 264.67 -4.72 -35.33 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.42 Total: 6.08 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.98 Total: -6.45 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 1.25 Total: -48.00 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.45 Total: -10.46 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.61 -4.72 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306673539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.848 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds