Wall clock time and date at job start Mon Mar 30 2020 03:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.64305 * 59.29825 * 9 7 2 11 11 C 1.55149 * 110.72106 * 182.44204 * 9 7 2 12 12 C 1.55126 * 101.48635 * 153.73360 * 11 9 7 13 13 N 1.47418 * 104.94179 * 323.22158 * 12 11 9 14 14 C 1.34777 * 125.64918 * 204.03989 * 13 12 11 15 15 O 1.21582 * 120.00422 * 179.97438 * 14 13 12 16 16 N 1.34776 * 119.99796 * 359.95798 * 14 13 12 17 17 C 1.46510 * 119.99862 * 180.02562 * 16 14 13 18 18 C 1.52995 * 117.49690 * 223.62212 * 17 16 14 19 19 C 1.52998 * 117.49588 * 154.99948 * 17 16 14 20 20 C 1.47020 * 108.70702 * 24.00247 * 13 12 11 21 21 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 22 22 H 1.08995 * 111.00597 * 271.93840 * 11 9 7 23 23 H 1.09002 * 111.00675 * 35.79351 * 11 9 7 24 24 H 1.09005 * 110.41884 * 204.29538 * 12 11 9 25 25 H 1.08997 * 110.30145 * 82.09152 * 12 11 9 26 26 H 0.96997 * 120.00034 * 359.97438 * 16 14 13 27 27 H 1.08997 * 115.54642 * 9.33165 * 17 16 14 28 28 H 1.08998 * 117.49930 * 359.97438 * 18 17 16 29 29 H 1.09006 * 117.49987 * 145.02239 * 18 17 16 30 30 H 1.09001 * 117.49600 * 214.97545 * 19 17 16 31 31 H 1.09000 * 117.50433 * 359.97438 * 19 17 16 32 32 H 1.08994 * 109.88587 * 239.52206 * 20 13 12 33 33 H 1.09004 * 110.00963 * 118.42546 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6076 -2.5714 -0.8774 11 6 2.2323 -3.6994 0.0606 12 6 1.3482 -4.7875 0.7246 13 7 0.5274 -4.0610 1.7103 14 6 -0.0373 -4.5975 2.8102 15 8 -0.6967 -3.9002 3.5567 16 7 0.1287 -5.9070 3.0825 17 6 -0.4857 -6.4903 4.2778 18 6 0.3657 -7.4477 5.1140 19 6 -0.7810 -7.9914 4.2594 20 6 0.4275 -2.6541 1.2954 21 1 -0.4850 -0.8401 0.0004 22 1 2.5431 -4.0013 -0.9395 23 1 3.0963 -3.4665 0.6830 24 1 1.9704 -5.5309 1.2233 25 1 0.7121 -5.2647 -0.0208 26 1 0.6542 -6.4634 2.4866 27 1 -1.1869 -5.8458 4.8080 28 1 1.3828 -7.6439 4.7746 29 1 0.2249 -7.4333 6.1948 30 1 -1.6762 -8.3346 4.7779 31 1 -0.5186 -8.5449 3.3578 32 1 0.8351 -2.0084 2.0731 33 1 -0.6140 -2.3941 1.1060 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307359387.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:46 Heat of formation + Delta-G solvation = -8.130369 kcal Electronic energy + Delta-G solvation = -15422.479154 eV Core-core repulsion = 12869.754434 eV Total energy + Delta-G solvation = -2552.724720 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81848 -37.68599 -36.43532 -33.42365 -32.33178 -30.22050 -27.89291 -24.85699 -22.86373 -22.50857 -21.60376 -20.13870 -19.56518 -17.78532 -16.72046 -16.42286 -15.53226 -14.60110 -14.52409 -14.06977 -13.76958 -13.15611 -12.73370 -12.43477 -12.38338 -11.87565 -11.72000 -11.46934 -11.17121 -10.83419 -10.74726 -10.58909 -10.12750 -10.08175 -9.74043 -9.65616 -8.69747 -8.63077 -8.44417 -7.89044 -6.40138 -4.15140 2.93029 3.42954 3.43647 3.47446 3.59996 3.96770 4.25886 4.50735 4.71113 4.88332 4.91221 5.26601 5.30750 5.46819 5.57657 5.63762 5.70059 5.79936 5.92918 6.02090 6.26101 6.54052 6.64384 6.70773 6.74470 6.87435 7.06999 7.45299 7.49705 8.11127 8.34042 8.42816 8.79991 9.00220 9.57216 10.97604 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052653 B = 0.006062 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.658371 B = 4617.898876 C = 4850.973520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 1.075 2.925 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.596 4.596 8 H 0.055 0.945 9 C 0.027 3.973 10 H 0.032 0.968 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.630 5.630 14 C 0.718 3.282 15 O -0.593 6.593 16 N -0.723 5.723 17 C 0.107 3.893 18 C -0.199 4.199 19 C -0.195 4.195 20 C 0.131 3.869 21 H 0.272 0.728 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.394 0.606 27 H 0.137 0.863 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -14.400 4.075 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.903 3.097 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.635 4.635 8 H 0.073 0.927 9 C 0.008 3.992 10 H 0.050 0.950 11 C -0.156 4.156 12 C -0.025 4.025 13 N -0.367 5.367 14 C 0.420 3.580 15 O -0.471 6.471 16 N -0.377 5.377 17 C 0.000 4.000 18 C -0.238 4.238 19 C -0.233 4.233 20 C 0.009 3.991 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.228 0.772 27 H 0.155 0.845 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.426 -12.209 4.664 13.147 hybrid contribution 0.464 -2.135 -0.267 2.201 sum 1.890 -14.344 4.397 15.122 Atomic orbital electron populations 1.70760 1.06883 1.31099 1.45433 1.25888 0.96505 1.02842 0.93217 0.83455 0.74412 0.74767 0.77059 1.21487 1.21245 1.21282 1.21921 0.94223 0.90648 1.56665 0.92651 1.19924 0.93099 0.94221 0.91961 0.94962 1.22760 0.98250 0.95237 0.99369 1.22312 0.93325 0.95552 0.91272 1.47979 1.53066 1.12566 1.23087 1.15471 0.80131 0.81330 0.81065 1.90887 1.45590 1.60486 1.50172 1.44533 1.57278 1.08789 1.27066 1.21354 0.99462 0.90347 0.88879 1.23438 0.96551 1.05101 0.98725 1.23381 1.00486 0.96978 1.02484 1.22598 1.00154 0.77442 0.98948 0.91601 0.91361 0.91351 0.92504 0.92407 0.77185 0.84491 0.88731 0.88146 0.88035 0.88728 0.91795 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.01 13.45 55.43 0.75 -26.26 16 2 C 0.02 0.58 5.34 -17.82 -0.10 0.49 16 3 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 4 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.60 -16.15 8.38 -34.44 -0.29 -16.44 16 8 H 0.06 1.49 7.77 -52.49 -0.41 1.08 16 9 C 0.03 0.65 2.46 -89.94 -0.22 0.43 16 10 H 0.03 0.82 8.00 -51.93 -0.42 0.40 16 11 C -0.12 -2.25 6.52 -24.47 -0.16 -2.41 16 12 C 0.10 1.63 6.58 -2.42 -0.02 1.61 16 13 N -0.63 -12.93 3.33 -176.10 -0.59 -13.52 16 14 C 0.72 14.64 8.49 -86.92 -0.74 13.90 16 15 O -0.59 -14.49 16.24 5.29 0.09 -14.40 16 16 N -0.72 -10.91 5.53 -58.67 -0.32 -11.24 16 17 C 0.11 1.40 6.43 -67.93 -0.44 0.96 16 18 C -0.20 -1.99 10.46 -26.73 -0.28 -2.27 16 19 C -0.19 -1.84 10.46 -26.73 -0.28 -2.12 16 20 C 0.13 3.19 5.47 -3.06 -0.02 3.17 16 21 H 0.27 8.06 5.63 -40.82 -0.23 7.83 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.07 1.33 8.03 -51.93 -0.42 0.92 16 24 H 0.06 0.76 7.30 -51.93 -0.38 0.38 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.39 4.89 7.31 -40.82 -0.30 4.59 16 27 H 0.14 2.02 7.40 -51.93 -0.38 1.63 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.75 7.81 -51.93 -0.41 1.34 16 33 H 0.05 1.32 7.01 -51.93 -0.36 0.95 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -32.12 275.46 -8.18 -40.29 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.63 Total: 3.81 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.53 Total: -2.67 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.16 Total: -51.02 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.09 Total: -14.40 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.12 -8.18 -40.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307359387.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.164 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds