Wall clock time and date at job start Mon Mar 30 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.64305 * 59.29825 * 9 7 2 11 11 C 1.55149 * 110.72106 * 182.44204 * 9 7 2 12 12 C 1.55126 * 101.48635 * 153.73360 * 11 9 7 13 13 N 1.47418 * 104.94179 * 323.22158 * 12 11 9 14 14 C 1.34777 * 125.64918 * 204.03989 * 13 12 11 15 15 O 1.21582 * 120.00422 * 179.97438 * 14 13 12 16 16 N 1.34776 * 119.99796 * 359.95798 * 14 13 12 17 17 C 1.46510 * 119.99862 * 180.02562 * 16 14 13 18 18 C 1.52995 * 117.49690 * 223.62212 * 17 16 14 19 19 C 1.52998 * 117.49588 * 154.99948 * 17 16 14 20 20 C 1.47020 * 108.70702 * 24.00247 * 13 12 11 21 21 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 22 22 H 1.08995 * 111.00597 * 271.93840 * 11 9 7 23 23 H 1.09002 * 111.00675 * 35.79351 * 11 9 7 24 24 H 1.09005 * 110.41884 * 204.29538 * 12 11 9 25 25 H 1.08997 * 110.30145 * 82.09152 * 12 11 9 26 26 H 0.96997 * 120.00034 * 359.97438 * 16 14 13 27 27 H 1.08997 * 115.54642 * 9.33165 * 17 16 14 28 28 H 1.08998 * 117.49930 * 359.97438 * 18 17 16 29 29 H 1.09006 * 117.49987 * 145.02239 * 18 17 16 30 30 H 1.09001 * 117.49600 * 214.97545 * 19 17 16 31 31 H 1.09000 * 117.50433 * 359.97438 * 19 17 16 32 32 H 1.08994 * 109.88587 * 239.52206 * 20 13 12 33 33 H 1.09004 * 110.00963 * 118.42546 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6076 -2.5714 -0.8774 11 6 2.2323 -3.6994 0.0606 12 6 1.3482 -4.7875 0.7246 13 7 0.5274 -4.0610 1.7103 14 6 -0.0373 -4.5975 2.8102 15 8 -0.6967 -3.9002 3.5567 16 7 0.1287 -5.9070 3.0825 17 6 -0.4857 -6.4903 4.2778 18 6 0.3657 -7.4477 5.1140 19 6 -0.7810 -7.9914 4.2594 20 6 0.4275 -2.6541 1.2954 21 1 -0.4850 -0.8401 0.0004 22 1 2.5431 -4.0013 -0.9395 23 1 3.0963 -3.4665 0.6830 24 1 1.9704 -5.5309 1.2233 25 1 0.7121 -5.2647 -0.0208 26 1 0.6542 -6.4634 2.4866 27 1 -1.1869 -5.8458 4.8080 28 1 1.3828 -7.6439 4.7746 29 1 0.2249 -7.4333 6.1948 30 1 -1.6762 -8.3346 4.7779 31 1 -0.5186 -8.5449 3.3578 32 1 0.8351 -2.0084 2.0731 33 1 -0.6140 -2.3941 1.1060 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307359387.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:45 Heat of formation + Delta-G solvation = -30.083484 kcal Electronic energy + Delta-G solvation = -15423.431112 eV Core-core repulsion = 12869.754434 eV Total energy + Delta-G solvation = -2553.676678 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35914 -39.07719 -37.83151 -35.34032 -33.81242 -31.88206 -29.63929 -26.84711 -24.48733 -23.26091 -22.79485 -21.81004 -21.16913 -19.44735 -18.60591 -17.68883 -17.15388 -16.00994 -15.78464 -15.67569 -15.49465 -14.94085 -14.17518 -13.96649 -13.76355 -13.64783 -13.20765 -12.65169 -12.52801 -12.48209 -12.35776 -11.90598 -11.88079 -11.49674 -11.46077 -11.39412 -10.66286 -10.58051 -10.02976 -9.43109 -8.62447 -6.37944 1.49161 1.54799 1.64074 1.78598 1.96075 2.57272 2.92933 3.00893 3.17109 3.78608 3.81340 4.01367 4.08477 4.09406 4.24765 4.36537 4.50521 4.70316 4.75815 4.76532 4.94567 5.01102 5.03489 5.15382 5.21709 5.29367 5.51202 5.54424 5.99739 6.06256 6.18758 6.59244 6.94760 7.43291 7.45742 8.75573 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052653 B = 0.006062 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.658371 B = 4617.898876 C = 4850.973520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.032 4.032 3 Si 1.119 2.881 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.604 4.604 8 H 0.057 0.943 9 C 0.017 3.983 10 H 0.016 0.984 11 C -0.109 4.109 12 C 0.102 3.898 13 N -0.636 5.636 14 C 0.711 3.289 15 O -0.645 6.645 16 N -0.699 5.699 17 C 0.059 3.941 18 C -0.181 4.181 19 C -0.164 4.164 20 C 0.150 3.850 21 H 0.260 0.740 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.411 0.589 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.022 0.978 33 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -17.022 3.945 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.231 4.231 3 Si 0.941 3.059 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.642 4.642 8 H 0.076 0.924 9 C -0.002 4.002 10 H 0.034 0.966 11 C -0.147 4.147 12 C -0.019 4.019 13 N -0.372 5.372 14 C 0.413 3.587 15 O -0.528 6.528 16 N -0.353 5.353 17 C -0.047 4.047 18 C -0.220 4.220 19 C -0.203 4.203 20 C 0.026 3.974 21 H 0.070 0.930 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.248 0.752 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.041 0.959 33 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.174 -14.932 4.522 15.921 hybrid contribution -0.082 -1.409 -0.183 1.423 sum 3.093 -16.341 4.339 17.188 Atomic orbital electron populations 1.70875 1.08056 1.30448 1.48119 1.27305 0.96522 1.06742 0.92529 0.82908 0.74528 0.71280 0.77195 1.19044 1.21392 1.20323 1.22327 0.94568 0.92052 1.55218 0.92425 1.19891 0.94008 0.95628 0.90718 0.96583 1.22706 0.97144 0.93520 1.01282 1.22542 0.93211 0.95109 0.91047 1.47896 1.53941 1.11291 1.24111 1.15714 0.79737 0.82776 0.80465 1.90844 1.47825 1.62246 1.51853 1.44275 1.56656 1.06645 1.27762 1.21509 1.01683 0.92095 0.89399 1.23527 0.97146 1.02032 0.99261 1.23493 1.00819 0.93124 1.02832 1.21997 0.97868 0.79577 0.97931 0.92962 0.88611 0.91733 0.88115 0.90100 0.75170 0.87265 0.87613 0.87035 0.86511 0.87004 0.95918 0.96390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.45 21.45 0.29 -57.84 16 2 C -0.03 -1.84 5.34 84.65 0.45 -1.39 16 3 Si 1.12 50.47 29.90 68.60 2.05 52.52 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.60 -33.12 8.38 25.60 0.21 -32.91 16 8 H 0.06 3.07 7.77 -2.91 -0.02 3.04 16 9 C 0.02 0.82 2.46 -10.35 -0.03 0.80 16 10 H 0.02 0.83 8.00 -2.39 -0.02 0.82 16 11 C -0.11 -3.90 6.52 32.06 0.21 -3.69 16 12 C 0.10 3.08 6.58 86.93 0.57 3.65 16 13 N -0.64 -26.04 3.33 -829.33 -2.76 -28.80 16 14 C 0.71 29.16 8.49 179.05 1.52 30.68 16 15 O -0.65 -32.98 16.24 -3.97 -0.06 -33.04 16 16 N -0.70 -19.86 5.53 -457.81 -2.53 -22.39 16 17 C 0.06 1.46 6.43 44.99 0.29 1.75 16 18 C -0.18 -3.02 10.46 30.59 0.32 -2.70 16 19 C -0.16 -2.51 10.46 30.59 0.32 -2.19 16 20 C 0.15 7.69 5.47 86.73 0.47 8.17 16 21 H 0.26 16.28 5.63 -92.71 -0.52 15.76 16 22 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 23 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 24 H 0.10 2.20 7.30 -2.38 -0.02 2.18 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.41 8.69 7.31 -92.71 -0.68 8.02 16 27 H 0.11 3.30 7.40 -2.39 -0.02 3.29 16 28 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.02 1.31 7.81 -2.39 -0.02 1.29 16 33 H 0.02 1.00 7.01 -2.39 -0.02 0.99 16 Total: -1.00 -74.45 275.46 2.01 -72.44 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.67 Total: 14.96 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 4.35 Total: 2.15 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -5.00 Total: -109.03 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.06 Total: -33.04 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.05 Total: 52.52 kcal Total: -74.45 2.01 -72.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307359387.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.361 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds