Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47285 * 270.00152 * 3 2 1 5 5 H 1.48499 * 109.47062 * 30.00564 * 3 2 1 6 6 H 1.48506 * 109.46897 * 150.00427 * 3 2 1 7 7 C 1.37882 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00044 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.14783 * 59.30411 * 9 7 2 11 11 N 1.45753 * 109.19456 * 300.00086 * 9 7 2 12 12 C 1.33689 * 123.92874 * 222.50339 * 11 9 7 13 13 O 1.21281 * 119.08779 * 182.63799 * 12 11 9 14 14 C 1.50980 * 121.82429 * 2.61140 * 12 11 9 15 15 H 1.09007 * 109.75902 * 219.65771 * 14 12 11 16 16 C 1.53140 * 108.31098 * 99.84632 * 14 12 11 17 17 C 1.52852 * 109.99077 * 183.88637 * 16 14 12 18 18 C 1.53114 * 109.08250 * 61.06456 * 17 16 14 19 19 C 1.52954 * 109.04613 * 298.49721 * 18 17 16 20 20 C 1.50352 * 110.48149 * 58.76086 * 19 18 17 21 21 H 1.09006 * 108.33675 * 183.87573 * 20 19 18 22 22 N 1.46881 * 109.19303 * 178.60750 * 9 7 2 23 23 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 24 24 H 0.97003 * 118.03143 * 42.48379 * 11 9 7 25 25 H 1.09003 * 109.38134 * 63.72685 * 16 14 12 26 26 H 1.09000 * 109.29998 * 303.99402 * 16 14 12 27 27 H 1.09000 * 109.53581 * 301.18328 * 17 16 14 28 28 H 1.08993 * 109.53349 * 180.94643 * 17 16 14 29 29 H 1.09002 * 109.55729 * 58.39630 * 18 17 16 30 30 H 1.08997 * 109.55636 * 178.60540 * 18 17 16 31 31 H 1.08992 * 109.33132 * 179.72626 * 19 18 17 32 32 H 1.08993 * 109.33420 * 299.22522 * 19 18 17 33 33 H 1.00899 * 110.99814 * 46.97722 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6167 -2.5458 -0.8857 11 7 0.4158 -2.5703 1.1918 12 6 0.2806 -3.6674 1.9438 13 8 -0.4760 -3.6431 2.8914 14 6 1.0433 -4.9358 1.6458 15 1 0.3989 -5.8000 1.8078 16 6 2.2486 -5.0051 2.5880 17 6 3.1031 -6.2278 2.2543 18 6 3.6154 -6.1031 0.8168 19 6 2.4207 -6.0667 -0.1375 20 6 1.5180 -4.9108 0.1936 21 1 0.6466 -4.9581 -0.4596 22 7 2.2105 -3.6107 -0.0349 23 1 -0.4850 0.8400 0.0004 24 1 -0.0709 -1.7738 1.4557 25 1 1.8990 -5.0782 3.6179 26 1 2.8483 -4.1022 2.4728 27 1 2.5001 -7.1308 2.3493 28 1 3.9491 -6.2792 2.9396 29 1 4.1930 -5.1845 0.7137 30 1 4.2464 -6.9595 0.5788 31 1 2.7801 -5.9731 -1.1622 32 1 1.8526 -6.9917 -0.0400 33 1 2.9479 -3.4728 0.6399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307407274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = -55.825389 kcal Electronic energy + Delta-G solvation = -16316.693216 eV Core-core repulsion = 13761.900285 eV Total energy + Delta-G solvation = -2554.792931 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09151 -37.15917 -35.39515 -32.57410 -31.28810 -30.55770 -29.22262 -25.96579 -23.32867 -22.18261 -22.04815 -19.63476 -18.05701 -17.02102 -16.07668 -15.58522 -15.14359 -14.54742 -14.42578 -14.12211 -13.52852 -13.24802 -12.91712 -12.49142 -12.34959 -11.92715 -11.67433 -11.52356 -11.04470 -11.01054 -10.86613 -10.54874 -10.27652 -10.23468 -9.90618 -9.78368 -8.98199 -8.62694 -8.00155 -7.69142 -6.34869 -4.45753 3.17299 3.25248 3.27849 3.56557 4.19464 4.39545 4.79977 4.90863 4.98417 5.11430 5.27696 5.38153 5.50535 5.64124 5.72992 5.79175 5.83607 5.92705 6.06709 6.23368 6.29375 6.33121 6.45617 6.52866 6.60109 6.98942 7.29028 7.61534 7.86706 8.06553 8.25668 8.51102 8.95002 9.25787 9.37574 10.72087 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.009417 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.822504 B = 2972.517578 C = 3326.606176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.070 3.930 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.413 3.587 10 H 0.057 0.943 11 N -0.704 5.704 12 C 0.498 3.502 13 O -0.596 6.596 14 C -0.127 4.127 15 H 0.091 0.909 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.102 4.102 20 C 0.081 3.919 21 H 0.074 0.926 22 N -0.669 5.669 23 H 0.271 0.729 24 H 0.410 0.590 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 -9.405 0.312 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.091 0.909 9 C 0.223 3.777 10 H 0.074 0.926 11 N -0.357 5.357 12 C 0.283 3.717 13 O -0.480 6.480 14 C -0.150 4.150 15 H 0.109 0.891 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.140 4.140 20 C -0.029 4.029 21 H 0.092 0.908 22 N -0.302 5.302 23 H 0.081 0.919 24 H 0.249 0.751 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.370 -9.473 -0.051 10.890 hybrid contribution -0.081 1.331 0.988 1.660 sum 5.290 -8.142 0.938 9.755 Atomic orbital electron populations 1.69783 1.06052 1.28008 1.48940 1.25089 0.95047 0.99948 0.93430 0.86321 0.79669 0.82068 0.78367 1.20251 1.21039 1.19643 1.21306 0.93866 0.89346 1.52508 0.90915 1.19427 0.85530 0.88774 0.84000 0.92563 1.47385 1.47055 1.13066 1.28208 1.20243 0.82474 0.85914 0.83057 1.90620 1.40573 1.85163 1.31635 1.22012 0.97825 0.97231 0.97982 0.89061 1.21401 0.95393 0.98803 0.98832 1.21523 0.99030 0.97873 0.96890 1.21557 0.97793 1.01965 0.94496 1.20938 0.96246 0.96808 0.99978 1.21377 0.97139 0.91464 0.92940 0.90754 1.61928 1.12863 1.00752 1.54644 0.91941 0.75060 0.91514 0.91632 0.92044 0.91995 0.91299 0.92257 0.90820 0.92178 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 11.80 55.43 0.65 -23.14 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 3 Si 0.91 20.11 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.53 -13.45 8.84 -34.44 -0.30 -13.75 16 8 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.41 9.73 3.33 -129.18 -0.43 9.30 16 10 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 11 N -0.70 -17.05 5.09 -58.50 -0.30 -17.35 16 12 C 0.50 11.42 7.03 -11.33 -0.08 11.34 16 13 O -0.60 -15.54 17.85 5.56 0.10 -15.44 16 14 C -0.13 -2.27 2.61 -91.66 -0.24 -2.51 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.11 -1.67 4.84 -26.74 -0.13 -1.80 16 17 C -0.12 -1.42 5.93 -26.75 -0.16 -1.57 16 18 C -0.12 -1.46 5.73 -26.70 -0.15 -1.61 16 19 C -0.10 -1.34 5.56 -28.08 -0.16 -1.50 16 20 C 0.08 1.36 2.53 -67.93 -0.17 1.19 16 21 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 22 N -0.67 -13.06 6.27 -104.57 -0.66 -13.71 16 23 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 24 H 0.41 10.93 6.96 -40.82 -0.28 10.65 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.10 6.78 -51.93 -0.35 0.75 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.90 7.21 -51.93 -0.37 0.52 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.34 6.45 5.82 -39.29 -0.23 6.22 16 LS Contribution 259.62 15.07 3.91 3.91 Total: -1.00 -27.85 259.62 -7.81 -35.66 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -4.58 Total: 14.21 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.92 Total: 0.78 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.30 Total: -54.20 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.10 Total: -15.44 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.85 -7.81 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.170 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds