Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47285 * 270.00152 * 3 2 1 5 5 H 1.48499 * 109.47062 * 30.00564 * 3 2 1 6 6 H 1.48506 * 109.46897 * 150.00427 * 3 2 1 7 7 C 1.37882 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00044 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.14783 * 59.30411 * 9 7 2 11 11 N 1.45753 * 109.19456 * 300.00086 * 9 7 2 12 12 C 1.33689 * 123.92874 * 222.50339 * 11 9 7 13 13 O 1.21281 * 119.08779 * 182.63799 * 12 11 9 14 14 C 1.50980 * 121.82429 * 2.61140 * 12 11 9 15 15 H 1.09007 * 109.75902 * 219.65771 * 14 12 11 16 16 C 1.53140 * 108.31098 * 99.84632 * 14 12 11 17 17 C 1.52852 * 109.99077 * 183.88637 * 16 14 12 18 18 C 1.53114 * 109.08250 * 61.06456 * 17 16 14 19 19 C 1.52954 * 109.04613 * 298.49721 * 18 17 16 20 20 C 1.50352 * 110.48149 * 58.76086 * 19 18 17 21 21 H 1.09006 * 108.33675 * 183.87573 * 20 19 18 22 22 N 1.46881 * 109.19303 * 178.60750 * 9 7 2 23 23 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 24 24 H 0.97003 * 118.03143 * 42.48379 * 11 9 7 25 25 H 1.09003 * 109.38134 * 63.72685 * 16 14 12 26 26 H 1.09000 * 109.29998 * 303.99402 * 16 14 12 27 27 H 1.09000 * 109.53581 * 301.18328 * 17 16 14 28 28 H 1.08993 * 109.53349 * 180.94643 * 17 16 14 29 29 H 1.09002 * 109.55729 * 58.39630 * 18 17 16 30 30 H 1.08997 * 109.55636 * 178.60540 * 18 17 16 31 31 H 1.08992 * 109.33132 * 179.72626 * 19 18 17 32 32 H 1.08993 * 109.33420 * 299.22522 * 19 18 17 33 33 H 1.00899 * 110.99814 * 46.97722 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6167 -2.5458 -0.8857 11 7 0.4158 -2.5703 1.1918 12 6 0.2806 -3.6674 1.9438 13 8 -0.4760 -3.6431 2.8914 14 6 1.0433 -4.9358 1.6458 15 1 0.3989 -5.8000 1.8078 16 6 2.2486 -5.0051 2.5880 17 6 3.1031 -6.2278 2.2543 18 6 3.6154 -6.1031 0.8168 19 6 2.4207 -6.0667 -0.1375 20 6 1.5180 -4.9108 0.1936 21 1 0.6466 -4.9581 -0.4596 22 7 2.2105 -3.6107 -0.0349 23 1 -0.4850 0.8400 0.0004 24 1 -0.0709 -1.7738 1.4557 25 1 1.8990 -5.0782 3.6179 26 1 2.8483 -4.1022 2.4728 27 1 2.5001 -7.1308 2.3493 28 1 3.9491 -6.2792 2.9396 29 1 4.1930 -5.1845 0.7137 30 1 4.2464 -6.9595 0.5788 31 1 2.7801 -5.9731 -1.1622 32 1 1.8526 -6.9917 -0.0400 33 1 2.9479 -3.4728 0.6399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307407274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = -75.971219 kcal Electronic energy + Delta-G solvation = -16317.566805 eV Core-core repulsion = 13761.900285 eV Total energy + Delta-G solvation = -2555.666520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.69182 -38.77313 -37.13234 -34.39143 -32.89778 -31.87558 -30.76003 -27.79491 -24.68303 -23.94007 -23.35179 -21.05558 -19.57329 -18.86156 -17.88823 -17.26323 -16.75587 -16.22198 -15.90349 -15.71661 -14.92632 -14.82573 -14.44099 -13.96977 -13.87861 -13.36426 -13.19881 -12.88838 -12.81334 -12.51519 -12.26093 -12.19998 -11.75454 -11.66749 -11.28028 -11.03382 -10.87063 -10.45953 -9.68879 -9.58575 -8.31920 -6.49778 1.41272 1.43371 1.53516 1.74258 2.34099 2.59162 3.12623 3.31617 3.63249 3.84439 3.87951 4.16628 4.33195 4.35640 4.41301 4.55793 4.64292 4.72230 4.93275 5.08811 5.14248 5.19570 5.27780 5.35403 5.38246 5.51621 5.59682 5.61370 6.07333 6.15385 6.52059 6.56274 7.05687 7.28705 7.42116 8.74513 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.009417 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.822504 B = 2972.517578 C = 3326.606176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.418 3.582 10 H 0.026 0.974 11 N -0.711 5.711 12 C 0.488 3.512 13 O -0.633 6.633 14 C -0.118 4.118 15 H 0.107 0.893 16 C -0.103 4.103 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.096 4.096 20 C 0.084 3.916 21 H 0.061 0.939 22 N -0.662 5.662 23 H 0.271 0.729 24 H 0.394 0.606 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 -10.981 0.228 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.093 0.907 9 C 0.227 3.773 10 H 0.043 0.957 11 N -0.361 5.361 12 C 0.275 3.725 13 O -0.519 6.519 14 C -0.141 4.141 15 H 0.125 0.875 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.134 4.134 20 C -0.026 4.026 21 H 0.079 0.921 22 N -0.295 5.295 23 H 0.080 0.920 24 H 0.230 0.770 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.297 -11.082 -0.153 13.269 hybrid contribution -0.727 1.806 1.018 2.197 sum 6.569 -9.276 0.865 11.400 Atomic orbital electron populations 1.69897 1.07407 1.28646 1.49803 1.25875 0.95741 1.03156 0.93054 0.85328 0.78457 0.78017 0.78456 1.19633 1.21261 1.18987 1.21593 0.94107 0.90309 1.52306 0.90676 1.19147 0.85430 0.90017 0.82659 0.95662 1.47500 1.47053 1.13034 1.28547 1.21217 0.82110 0.87085 0.82052 1.90585 1.42269 1.85956 1.33129 1.22041 0.98333 0.94505 0.99247 0.87461 1.21420 0.94631 1.00252 0.97818 1.21507 0.99143 0.96289 0.97440 1.21561 0.97355 1.02734 0.93852 1.20940 0.96249 0.95646 1.00565 1.21534 0.97595 0.91508 0.91924 0.92057 1.61862 1.12050 1.00843 1.54726 0.92016 0.77043 0.92202 0.93216 0.90341 0.90055 0.92495 0.89276 0.90386 0.89698 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 11.80 21.45 0.25 -50.18 16 2 C 0.02 1.22 5.28 84.66 0.45 1.66 16 3 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.54 -27.90 8.84 25.60 0.23 -27.68 16 8 H 0.08 3.74 7.81 -2.91 -0.02 3.71 16 9 C 0.42 20.19 3.33 128.96 0.43 20.62 16 10 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 11 N -0.71 -35.57 5.09 -458.00 -2.33 -37.90 16 12 C 0.49 22.76 7.03 87.91 0.62 23.38 16 13 O -0.63 -33.76 17.85 -3.03 -0.05 -33.81 16 14 C -0.12 -4.09 2.61 -11.47 -0.03 -4.12 16 15 H 0.11 3.39 8.14 -2.38 -0.02 3.38 16 16 C -0.10 -3.04 4.84 30.59 0.15 -2.89 16 17 C -0.11 -2.18 5.93 30.58 0.18 -2.00 16 18 C -0.12 -2.35 5.73 30.62 0.18 -2.18 16 19 C -0.10 -2.21 5.56 29.72 0.17 -2.04 16 20 C 0.08 2.72 2.53 43.58 0.11 2.83 16 21 H 0.06 2.14 8.04 -2.38 -0.02 2.12 16 22 N -0.66 -25.57 6.27 -484.75 -3.04 -28.61 16 23 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 24 H 0.39 21.90 6.96 -92.71 -0.65 21.26 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.62 6.78 -2.39 -0.02 1.60 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.30 7.21 -2.39 -0.02 1.28 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.34 12.81 5.82 -89.69 -0.52 12.29 16 Total: -1.00 -61.38 259.62 -0.72 -62.11 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.05 Total: 37.38 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 2.47 Total: 7.58 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.12 Total: -116.69 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.81 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -61.38 -0.72 -62.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.863 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds