Wall clock time and date at job start Mon Mar 30 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00317 * 2 1 4 4 H 1.48493 * 109.47068 * 270.00386 * 3 2 1 5 5 H 1.48502 * 109.47209 * 30.00467 * 3 2 1 6 6 H 1.48509 * 109.46952 * 150.00274 * 3 2 1 7 7 C 1.37880 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99730 * 173.54506 * 7 2 1 9 9 C 1.50700 * 120.00110 * 353.54236 * 7 2 1 10 10 C 1.53001 * 115.55111 * 85.38952 * 9 7 2 11 11 N 1.46892 * 109.47104 * 65.04854 * 10 9 7 12 12 C 1.46896 * 111.00186 * 185.38484 * 11 10 9 13 13 H 1.08997 * 110.54044 * 32.38378 * 12 11 10 14 14 C 1.54623 * 110.48981 * 155.00412 * 12 11 10 15 15 C 1.54481 * 101.76996 * 143.47889 * 14 12 11 16 16 N 1.46768 * 105.54496 * 334.53735 * 15 14 12 17 17 C 1.34625 * 111.18415 * 17.05747 * 16 15 14 18 18 O 1.21283 * 124.91029 * 179.57814 * 17 16 15 19 19 C 1.53001 * 117.50000 * 231.05868 * 9 7 2 20 20 C 1.53001 * 117.49530 * 299.71854 * 9 7 2 21 21 H 0.97008 * 119.99548 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46795 * 305.04673 * 10 9 7 23 23 H 1.08996 * 109.47057 * 185.05116 * 10 9 7 24 24 H 1.00906 * 111.00093 * 61.42756 * 11 10 9 25 25 H 1.08997 * 110.97413 * 25.35125 * 14 12 11 26 26 H 1.09007 * 110.99978 * 261.60864 * 14 12 11 27 27 H 1.08997 * 110.24661 * 93.57823 * 15 14 12 28 28 H 1.09003 * 110.24822 * 215.49777 * 15 14 12 29 29 H 0.96996 * 124.35152 * 197.08160 * 16 15 14 30 30 H 1.08993 * 117.50270 * 215.00017 * 19 9 7 31 31 H 1.09007 * 117.49589 * 0.02635 * 19 9 7 32 32 H 1.08999 * 117.50398 * 359.97438 * 20 9 7 33 33 H 1.09002 * 117.49741 * 144.99903 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0793 -1.1971 -0.1057 9 6 1.2580 -2.4951 0.1457 10 6 0.7014 -3.0859 -1.1513 11 7 1.8130 -3.4572 -2.0368 12 6 1.3167 -3.9100 -3.3432 13 1 0.3998 -3.3831 -3.6075 14 6 2.3937 -3.7022 -4.4330 15 6 2.1821 -4.9448 -5.3262 16 7 1.5836 -5.9604 -4.4518 17 6 1.0837 -5.4048 -3.3320 18 8 0.5278 -6.0146 -2.4432 19 6 1.7473 -3.4740 1.2149 20 6 0.4422 -2.7017 1.4234 21 1 -0.4850 0.8402 0.0004 22 1 0.0731 -2.3459 -1.6473 23 1 0.1081 -3.9711 -0.9220 24 1 2.3973 -4.1597 -1.6087 25 1 3.3933 -3.7000 -3.9983 26 1 2.2117 -2.7844 -4.9921 27 1 1.5056 -4.7081 -6.1474 28 1 3.1375 -5.2973 -5.7147 29 1 1.5530 -6.9083 -4.6550 30 1 1.6726 -4.5388 0.9945 31 1 2.6088 -3.1768 1.8130 32 1 0.4456 -1.8968 2.1585 33 1 -0.4912 -3.2585 1.3401 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308536823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:11 Heat of formation + Delta-G solvation = -32.616407 kcal Electronic energy + Delta-G solvation = -15613.657286 eV Core-core repulsion = 13059.870772 eV Total energy + Delta-G solvation = -2553.786514 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.38139 -38.65616 -37.42170 -35.38849 -33.87020 -30.99441 -28.28296 -27.36194 -25.29485 -22.93771 -22.66942 -21.30929 -20.83426 -18.45149 -18.11995 -17.35639 -16.74335 -16.37932 -15.79029 -15.11861 -15.01505 -14.86255 -14.65531 -14.04845 -13.71539 -13.24683 -13.17676 -12.81787 -12.68765 -12.56612 -12.27842 -12.03935 -11.98357 -11.34053 -11.27796 -10.72072 -10.36251 -10.07358 -9.94411 -9.14708 -8.00290 -6.07942 1.45883 1.47195 1.48312 1.58090 2.42160 2.51111 3.15306 3.29078 3.48307 3.66363 3.77131 4.17842 4.22327 4.37729 4.50625 4.60612 4.76599 4.79753 4.81563 4.96114 5.01551 5.18205 5.24319 5.26905 5.60734 5.71813 5.83940 5.88798 5.99655 6.19771 6.41767 6.58735 6.95350 7.22503 7.57441 9.09061 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.008118 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.632742 B = 3448.371215 C = 4021.583067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.480 4.480 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.121 3.879 11 N -0.641 5.641 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.113 4.113 15 C 0.104 3.896 16 N -0.718 5.718 17 C 0.481 3.519 18 O -0.584 6.584 19 C -0.191 4.191 20 C -0.167 4.167 21 H 0.256 0.744 22 H 0.048 0.952 23 H -0.002 1.002 24 H 0.335 0.665 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.415 0.585 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -7.778 -12.284 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.008 4.008 11 N -0.270 5.270 12 C -0.067 4.067 13 H 0.118 0.882 14 C -0.151 4.151 15 C -0.019 4.019 16 N -0.374 5.374 17 C 0.266 3.734 18 O -0.464 6.464 19 C -0.228 4.228 20 C -0.205 4.205 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.016 0.984 24 H 0.152 0.848 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.018 -7.183 -12.030 14.883 hybrid contribution -0.482 -0.389 0.534 0.818 sum 4.536 -7.572 -11.496 14.494 Atomic orbital electron populations 1.70144 1.07094 1.26705 1.51332 1.25645 0.95498 1.01791 0.94919 0.85673 0.78655 0.79818 0.78109 1.20099 1.21514 1.19572 1.20518 0.92638 0.89612 1.49071 0.92876 1.18944 0.97920 0.94017 0.86209 1.21261 0.90999 0.94847 0.93681 1.60579 1.20213 1.43402 1.02819 1.22599 1.00983 0.89710 0.93414 0.88165 1.22678 0.98665 0.99379 0.94420 1.22372 1.00450 0.86640 0.92473 1.46283 1.59291 1.11456 1.20338 1.22448 0.76660 0.92677 0.81658 1.90712 1.45033 1.70244 1.40419 1.22952 0.97404 0.96001 1.06450 1.22433 0.93195 1.01284 1.03580 0.93480 0.93389 0.98384 0.84760 0.89295 0.87494 0.88761 0.87083 0.74514 0.90522 0.90020 0.91861 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.09 12.92 21.45 0.28 -52.81 16 2 C 0.02 1.13 5.39 84.66 0.46 1.58 16 3 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.48 -26.48 8.74 25.60 0.22 -26.25 16 8 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.03 1.52 1.55 -52.93 -0.08 1.44 16 10 C 0.12 5.80 5.38 86.31 0.46 6.26 16 11 N -0.64 -25.37 6.19 -491.63 -3.04 -28.41 16 12 C 0.05 1.47 3.26 44.91 0.15 1.61 16 13 H 0.10 3.30 7.74 -2.39 -0.02 3.28 16 14 C -0.11 -2.31 6.88 31.65 0.22 -2.09 16 15 C 0.10 1.41 7.78 86.83 0.68 2.09 16 16 N -0.72 -14.75 6.26 -459.51 -2.87 -17.63 16 17 C 0.48 15.28 7.77 87.87 0.68 15.96 16 18 O -0.58 -24.41 17.40 -3.04 -0.05 -24.46 16 19 C -0.19 -8.73 9.96 30.62 0.30 -8.42 16 20 C -0.17 -8.39 9.42 30.62 0.29 -8.10 16 21 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 22 H 0.05 2.53 7.95 -2.38 -0.02 2.51 16 23 H 0.00 -0.10 7.51 -2.39 -0.02 -0.12 16 24 H 0.33 13.07 8.49 -89.69 -0.76 12.31 16 25 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 26 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.42 6.91 8.96 -92.71 -0.83 6.08 16 30 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.08 3.62 8.14 -2.38 -0.02 3.60 16 32 H 0.06 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.06 3.11 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -68.96 281.61 -0.76 -69.72 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.48 Total: 23.63 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.38 Total: -15.91 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -5.64 Total: -98.85 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.96 -0.76 -69.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308536823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.103 kcal (2) G-P(sol) polarization free energy of solvation -68.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds