Wall clock time and date at job start Mon Mar 30 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99836 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00123 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00294 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.66845 * 328.23754 * 14 13 11 16 16 C 1.54889 * 110.76036 * 205.00225 * 14 13 11 17 17 C 1.54265 * 104.19198 * 279.62795 * 16 14 13 18 18 H 1.09006 * 117.41176 * 116.37136 * 17 16 14 19 19 C 1.53005 * 118.20091 * 272.20877 * 17 16 14 20 20 C 1.53004 * 60.37663 * 93.61927 * 19 17 16 21 21 H 1.09001 * 119.29422 * 111.30927 * 20 19 17 22 22 C 1.54262 * 118.19918 * 266.38281 * 20 19 17 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 25 25 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 26 26 H 0.97000 * 119.99760 * 0.02562 * 10 9 7 27 27 H 0.97003 * 120.00269 * 0.02562 * 13 11 10 28 28 H 1.08995 * 110.48285 * 38.30369 * 16 14 13 29 29 H 1.08998 * 110.48530 * 160.81701 * 16 14 13 30 30 H 1.08997 * 117.46299 * 201.21848 * 19 17 16 31 31 H 1.08997 * 117.45769 * 346.02142 * 19 17 16 32 32 H 1.09000 * 110.48947 * 329.11406 * 22 20 19 33 33 H 1.08994 * 110.48657 * 206.46762 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3251 -2.8215 -0.0001 12 8 6.1151 -1.8973 0.0004 13 7 5.7743 -4.0921 -0.0008 14 6 7.2147 -4.3598 -0.0003 15 1 7.7516 -3.5773 -0.5363 16 6 7.5149 -5.7502 -0.6132 17 6 7.2290 -6.7396 0.5354 18 1 6.4174 -7.4532 0.3928 19 6 8.3639 -7.0650 1.5087 20 6 7.3759 -5.9463 1.8457 21 1 6.6779 -6.0822 2.6718 22 6 7.7459 -4.5026 1.4477 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6796 -0.8894 25 1 3.8746 -0.6807 0.8905 26 1 3.3696 -3.3125 -0.0009 27 1 5.1440 -4.8294 -0.0016 28 1 6.8543 -5.9453 -1.4580 29 1 8.5579 -5.8134 -0.9231 30 1 8.2877 -7.9913 2.0780 31 1 9.3734 -6.7735 1.2190 32 1 8.8269 -4.3651 1.4727 33 1 7.2540 -3.7873 2.1068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335132336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:57 Heat of formation + Delta-G solvation = -11.548695 kcal Electronic energy + Delta-G solvation = -15122.238754 eV Core-core repulsion = 12569.365805 eV Total energy + Delta-G solvation = -2552.872950 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14474 -38.59893 -34.42166 -33.85100 -32.30924 -30.03925 -28.37932 -27.47083 -22.90114 -22.12671 -20.62163 -19.97780 -19.67016 -18.20038 -16.47954 -16.30070 -15.76899 -14.87293 -14.56344 -13.98794 -13.77891 -13.33984 -13.09275 -12.79065 -12.33373 -12.22694 -11.90050 -11.52876 -11.41023 -10.96677 -10.86368 -10.72164 -10.20871 -9.93656 -9.86499 -9.53866 -9.42010 -8.79932 -8.71293 -7.97077 -6.18267 -4.19909 3.28251 3.31863 3.38692 3.45657 3.46126 3.86698 4.36610 4.37212 4.59120 4.69162 4.98224 5.06200 5.17463 5.19324 5.33456 5.41372 5.54391 5.58106 5.63218 5.81306 6.02388 6.06355 6.10470 6.18626 6.78978 6.92014 7.15442 7.29258 7.45515 7.64296 8.32189 8.73498 8.86015 9.26581 9.44039 10.93794 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.060413 B = 0.005290 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.367900 B = 5291.618996 C = 5474.484223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.605 6.605 13 N -0.743 5.743 14 C 0.162 3.838 15 H 0.095 0.905 16 C -0.103 4.103 17 C -0.172 4.172 18 H 0.109 0.891 19 C -0.155 4.155 20 C -0.161 4.161 21 H 0.107 0.893 22 C -0.109 4.109 23 H 0.267 0.733 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.392 0.608 27 H 0.393 0.607 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.295 -13.568 1.100 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.485 6.485 13 N -0.399 5.399 14 C 0.056 3.944 15 H 0.113 0.887 16 C -0.142 4.142 17 C -0.190 4.190 18 H 0.127 0.873 19 C -0.192 4.192 20 C -0.179 4.179 21 H 0.126 0.874 22 C -0.147 4.147 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.225 0.775 27 H 0.226 0.774 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.816 -12.526 1.085 19.432 hybrid contribution -0.405 0.083 0.133 0.434 sum 14.412 -12.443 1.218 19.079 Atomic orbital electron populations 1.69883 1.06219 1.27383 1.49677 1.24781 0.94779 0.99163 0.93910 0.86808 0.80605 0.83177 0.79045 1.19871 1.20957 1.18432 1.21105 0.88612 0.95171 1.53070 0.90334 1.19346 0.94767 0.77739 0.96593 1.45394 1.03777 1.10980 1.77409 1.16139 0.83503 0.82801 0.78093 1.90854 1.55386 1.43252 1.59010 1.45034 1.07006 1.06403 1.81414 1.21738 0.81214 0.96478 0.94982 0.88681 1.22277 1.02249 0.92742 0.96885 1.23255 1.01914 1.02051 0.91746 0.87312 1.23048 0.95070 0.99074 1.01970 1.23259 1.03372 0.92049 0.99241 0.87446 1.22421 1.00810 0.94263 0.97249 0.92305 0.95944 0.96423 0.77515 0.77404 0.90469 0.90120 0.88709 0.89048 0.90818 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.24 6.03 4.50 -5.19 -0.02 6.00 16 10 N -0.72 -15.19 5.55 -66.42 -0.37 -15.56 16 11 C 0.69 13.91 8.57 -86.92 -0.74 13.16 16 12 O -0.61 -14.48 15.99 5.29 0.08 -14.40 16 13 N -0.74 -10.86 5.14 -56.73 -0.29 -11.16 16 14 C 0.16 2.06 3.30 -65.93 -0.22 1.85 16 15 H 0.10 1.38 7.54 -51.93 -0.39 0.99 16 16 C -0.10 -0.98 6.21 -25.07 -0.16 -1.14 16 17 C -0.17 -1.54 6.87 -89.50 -0.62 -2.16 16 18 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.15 -1.28 10.07 -26.73 -0.27 -1.55 16 20 C -0.16 -1.62 6.92 -89.50 -0.62 -2.24 16 21 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 22 C -0.11 -1.29 6.31 -25.07 -0.16 -1.45 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 25 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 26 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 27 H 0.39 4.78 8.63 -40.82 -0.35 4.43 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -32.30 277.45 -8.34 -40.64 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.81 Total: 6.08 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.24 Total: -0.84 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.11 Total: -52.73 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.30 -8.34 -40.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335132336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.092 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds