Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99836 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00123 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00294 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.66845 * 328.23754 * 14 13 11 16 16 C 1.54889 * 110.76036 * 205.00225 * 14 13 11 17 17 C 1.54265 * 104.19198 * 279.62795 * 16 14 13 18 18 H 1.09006 * 117.41176 * 116.37136 * 17 16 14 19 19 C 1.53005 * 118.20091 * 272.20877 * 17 16 14 20 20 C 1.53004 * 60.37663 * 93.61927 * 19 17 16 21 21 H 1.09001 * 119.29422 * 111.30927 * 20 19 17 22 22 C 1.54262 * 118.19918 * 266.38281 * 20 19 17 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 25 25 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 26 26 H 0.97000 * 119.99760 * 0.02562 * 10 9 7 27 27 H 0.97003 * 120.00269 * 0.02562 * 13 11 10 28 28 H 1.08995 * 110.48285 * 38.30369 * 16 14 13 29 29 H 1.08998 * 110.48530 * 160.81701 * 16 14 13 30 30 H 1.08997 * 117.46299 * 201.21848 * 19 17 16 31 31 H 1.08997 * 117.45769 * 346.02142 * 19 17 16 32 32 H 1.09000 * 110.48947 * 329.11406 * 22 20 19 33 33 H 1.08994 * 110.48657 * 206.46762 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3251 -2.8215 -0.0001 12 8 6.1151 -1.8973 0.0004 13 7 5.7743 -4.0921 -0.0008 14 6 7.2147 -4.3598 -0.0003 15 1 7.7516 -3.5773 -0.5363 16 6 7.5149 -5.7502 -0.6132 17 6 7.2290 -6.7396 0.5354 18 1 6.4174 -7.4532 0.3928 19 6 8.3639 -7.0650 1.5087 20 6 7.3759 -5.9463 1.8457 21 1 6.6779 -6.0822 2.6718 22 6 7.7459 -4.5026 1.4477 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6796 -0.8894 25 1 3.8746 -0.6807 0.8905 26 1 3.3696 -3.3125 -0.0009 27 1 5.1440 -4.8294 -0.0016 28 1 6.8543 -5.9453 -1.4580 29 1 8.5579 -5.8134 -0.9231 30 1 8.2877 -7.9913 2.0780 31 1 9.3734 -6.7735 1.2190 32 1 8.8269 -4.3651 1.4727 33 1 7.2540 -3.7873 2.1068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335132336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = -34.504966 kcal Electronic energy + Delta-G solvation = -15123.234213 eV Core-core repulsion = 12569.365805 eV Total energy + Delta-G solvation = -2553.868408 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.32747 -39.89293 -36.20357 -35.25497 -34.36796 -31.28627 -29.33793 -29.22155 -24.46159 -23.33343 -22.16344 -21.00414 -20.59481 -19.88225 -18.32351 -17.52827 -16.92835 -16.51273 -16.31881 -15.54746 -15.05492 -14.80728 -14.43519 -14.31857 -13.92490 -13.57884 -13.05065 -12.80383 -12.71623 -12.43779 -12.27733 -11.91998 -11.70810 -11.64755 -11.26885 -10.94488 -10.91144 -10.61325 -10.24654 -9.63392 -8.39352 -6.46126 1.34044 1.35805 1.49479 1.89203 2.21429 2.29570 2.75862 2.96386 3.48647 3.58583 3.77067 3.94131 4.27438 4.41563 4.47062 4.55481 4.63013 4.76517 4.80858 4.94221 5.00276 5.05899 5.14540 5.20364 5.25842 5.31741 5.38316 5.56098 5.71790 6.00459 6.30942 6.56058 7.15311 7.28990 7.69552 8.75467 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.060413 B = 0.005290 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.367900 B = 5291.618996 C = 5474.484223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.252 3.748 10 N -0.723 5.723 11 C 0.694 3.306 12 O -0.645 6.645 13 N -0.720 5.720 14 C 0.152 3.848 15 H 0.075 0.925 16 C -0.093 4.093 17 C -0.167 4.167 18 H 0.121 0.879 19 C -0.138 4.138 20 C -0.178 4.178 21 H 0.104 0.896 22 C -0.106 4.106 23 H 0.273 0.727 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.404 0.596 27 H 0.408 0.592 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.671 -14.849 0.980 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.377 5.377 11 C 0.394 3.606 12 O -0.528 6.528 13 N -0.376 5.376 14 C 0.046 3.954 15 H 0.093 0.907 16 C -0.131 4.131 17 C -0.185 4.185 18 H 0.139 0.861 19 C -0.175 4.175 20 C -0.196 4.196 21 H 0.122 0.878 22 C -0.145 4.145 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.239 0.761 27 H 0.244 0.756 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.197 -13.884 0.968 21.355 hybrid contribution -0.817 0.389 0.181 0.923 sum 15.380 -13.495 1.149 20.493 Atomic orbital electron populations 1.69978 1.07664 1.28629 1.50754 1.25573 0.95533 1.02628 0.93545 0.85850 0.79234 0.79295 0.79458 1.19008 1.19672 1.18556 1.21276 0.89874 0.94600 1.52616 0.92304 1.18935 0.93033 0.79886 0.95418 1.45117 1.04691 1.09856 1.77991 1.16250 0.82613 0.83998 0.77723 1.90823 1.56184 1.45053 1.60772 1.44876 1.08411 1.04810 1.79523 1.21983 0.79422 0.98020 0.95933 0.90690 1.22224 1.03493 0.90302 0.97077 1.23329 1.02791 1.01692 0.90648 0.86134 1.23151 0.95004 0.98514 1.00837 1.23160 1.05046 0.91263 1.00100 0.87814 1.22332 1.01176 0.95068 0.95898 0.91816 0.97204 0.97451 0.76074 0.75627 0.89729 0.88388 0.87173 0.88219 0.89645 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 2 C 0.03 1.57 5.47 84.65 0.46 2.04 16 3 Si 0.94 44.77 27.47 68.60 1.88 46.65 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 7 C -0.55 -30.70 9.83 25.60 0.25 -30.44 16 8 H 0.06 3.46 7.84 -2.92 -0.02 3.44 16 9 C 0.25 12.79 4.50 85.64 0.39 13.17 16 10 N -0.72 -30.32 5.55 -482.30 -2.68 -32.99 16 11 C 0.69 27.70 8.57 179.06 1.53 29.23 16 12 O -0.65 -31.19 15.99 -4.00 -0.06 -31.25 16 13 N -0.72 -20.40 5.14 -451.65 -2.32 -22.72 16 14 C 0.15 3.69 3.30 46.28 0.15 3.85 16 15 H 0.07 2.16 7.54 -2.39 -0.02 2.14 16 16 C -0.09 -1.51 6.21 31.67 0.20 -1.31 16 17 C -0.17 -2.46 6.87 -10.07 -0.07 -2.53 16 18 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 19 C -0.14 -1.82 10.07 30.60 0.31 -1.52 16 20 C -0.18 -3.22 6.92 -10.07 -0.07 -3.29 16 21 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.11 -2.43 6.31 31.67 0.20 -2.23 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 25 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 26 H 0.40 14.78 8.34 -92.71 -0.77 14.01 16 27 H 0.41 9.23 8.63 -92.71 -0.80 8.43 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.33 277.45 -0.04 -69.37 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.51 Total: 19.78 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 3.35 Total: 6.97 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -4.70 Total: -111.52 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.25 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -69.33 -0.04 -69.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335132336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.861 kcal (2) G-P(sol) polarization free energy of solvation -69.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds