Wall clock time and date at job start Mon Mar 30 2020 03:19:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86798 * 119.99973 * 2 1
4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1
5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1
6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1
7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3
8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1
9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1
10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2
11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7
12 12 O 1.21589 * 119.99836 * 0.02562 * 11 10 9
13 13 N 1.34769 * 120.00123 * 180.02562 * 11 10 9
14 14 C 1.46504 * 120.00294 * 180.02562 * 13 11 10
15 15 H 1.09000 * 110.66845 * 328.23754 * 14 13 11
16 16 C 1.54889 * 110.76036 * 205.00225 * 14 13 11
17 17 C 1.54265 * 104.19198 * 279.62795 * 16 14 13
18 18 H 1.09006 * 117.41176 * 116.37136 * 17 16 14
19 19 C 1.53005 * 118.20091 * 272.20877 * 17 16 14
20 20 C 1.53004 * 60.37663 * 93.61927 * 19 17 16
21 21 H 1.09001 * 119.29422 * 111.30927 * 20 19 17
22 22 C 1.54262 * 118.19918 * 266.38281 * 20 19 17
23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3
24 24 H 1.08994 * 109.46697 * 300.00254 * 9 7 2
25 25 H 1.09000 * 109.47083 * 59.99509 * 9 7 2
26 26 H 0.97000 * 119.99760 * 0.02562 * 10 9 7
27 27 H 0.97003 * 120.00269 * 0.02562 * 13 11 10
28 28 H 1.08995 * 110.48285 * 38.30369 * 16 14 13
29 29 H 1.08998 * 110.48530 * 160.81701 * 16 14 13
30 30 H 1.08997 * 117.46299 * 201.21848 * 19 17 16
31 31 H 1.08997 * 117.45769 * 346.02142 * 19 17 16
32 32 H 1.09000 * 110.48947 * 329.11406 * 22 20 19
33 33 H 1.08994 * 110.48657 * 206.46762 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 1.4001
5 1 1.4466 2.6527 -0.7001
6 1 3.5467 1.4402 -0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5116 -1.1940 0.0000
10 7 4.0000 -2.5752 -0.0001
11 6 5.3251 -2.8215 -0.0001
12 8 6.1151 -1.8973 0.0004
13 7 5.7743 -4.0921 -0.0008
14 6 7.2147 -4.3598 -0.0003
15 1 7.7516 -3.5773 -0.5363
16 6 7.5149 -5.7502 -0.6132
17 6 7.2290 -6.7396 0.5354
18 1 6.4174 -7.4532 0.3928
19 6 8.3639 -7.0650 1.5087
20 6 7.3759 -5.9463 1.8457
21 1 6.6779 -6.0822 2.6718
22 6 7.7459 -4.5026 1.4477
23 1 -0.4850 0.8400 -0.0004
24 1 3.8752 -0.6796 -0.8894
25 1 3.8746 -0.6807 0.8905
26 1 3.3696 -3.3125 -0.0009
27 1 5.1440 -4.8294 -0.0016
28 1 6.8543 -5.9453 -1.4580
29 1 8.5579 -5.8134 -0.9231
30 1 8.2877 -7.9913 2.0780
31 1 9.3734 -6.7735 1.2190
32 1 8.8269 -4.3651 1.4727
33 1 7.2540 -3.7873 2.1068
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000335132336.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:56
Heat of formation + Delta-G solvation = -34.504966 kcal
Electronic energy + Delta-G solvation = -15123.234213 eV
Core-core repulsion = 12569.365805 eV
Total energy + Delta-G solvation = -2553.868408 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.32747 -39.89293 -36.20357 -35.25497 -34.36796 -31.28627 -29.33793 -29.22155
-24.46159 -23.33343 -22.16344 -21.00414 -20.59481 -19.88225 -18.32351 -17.52827
-16.92835 -16.51273 -16.31881 -15.54746 -15.05492 -14.80728 -14.43519 -14.31857
-13.92490 -13.57884 -13.05065 -12.80383 -12.71623 -12.43779 -12.27733 -11.91998
-11.70810 -11.64755 -11.26885 -10.94488 -10.91144 -10.61325 -10.24654 -9.63392
-8.39352 -6.46126 1.34044 1.35805 1.49479 1.89203 2.21429 2.29570
2.75862 2.96386 3.48647 3.58583 3.77067 3.94131 4.27438 4.41563
4.47062 4.55481 4.63013 4.76517 4.80858 4.94221 5.00276 5.05899
5.14540 5.20364 5.25842 5.31741 5.38316 5.56098 5.71790 6.00459
6.30942 6.56058 7.15311 7.28990 7.69552 8.75467
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.060413 B = 0.005290 C = 0.005113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 463.367900 B = 5291.618996 C = 5474.484223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.028 3.972
3 Si 0.938 3.062
4 H -0.265 1.265
5 H -0.272 1.272
6 H -0.261 1.261
7 C -0.546 4.546
8 H 0.059 0.941
9 C 0.252 3.748
10 N -0.723 5.723
11 C 0.694 3.306
12 O -0.645 6.645
13 N -0.720 5.720
14 C 0.152 3.848
15 H 0.075 0.925
16 C -0.093 4.093
17 C -0.167 4.167
18 H 0.121 0.879
19 C -0.138 4.138
20 C -0.178 4.178
21 H 0.104 0.896
22 C -0.106 4.106
23 H 0.273 0.727
24 H 0.010 0.990
25 H 0.008 0.992
26 H 0.404 0.596
27 H 0.408 0.592
28 H 0.084 0.916
29 H 0.098 0.902
30 H 0.110 0.890
31 H 0.099 0.901
32 H 0.085 0.915
33 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.671 -14.849 0.980 21.611
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.173 4.173
3 Si 0.762 3.238
4 H -0.190 1.190
5 H -0.197 1.197
6 H -0.186 1.186
7 C -0.584 4.584
8 H 0.077 0.923
9 C 0.127 3.873
10 N -0.377 5.377
11 C 0.394 3.606
12 O -0.528 6.528
13 N -0.376 5.376
14 C 0.046 3.954
15 H 0.093 0.907
16 C -0.131 4.131
17 C -0.185 4.185
18 H 0.139 0.861
19 C -0.175 4.175
20 C -0.196 4.196
21 H 0.122 0.878
22 C -0.145 4.145
23 H 0.082 0.918
24 H 0.028 0.972
25 H 0.025 0.975
26 H 0.239 0.761
27 H 0.244 0.756
28 H 0.103 0.897
29 H 0.116 0.884
30 H 0.128 0.872
31 H 0.118 0.882
32 H 0.104 0.896
33 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 16.197 -13.884 0.968 21.355
hybrid contribution -0.817 0.389 0.181 0.923
sum 15.380 -13.495 1.149 20.493
Atomic orbital electron populations
1.69978 1.07664 1.28629 1.50754 1.25573 0.95533 1.02628 0.93545
0.85850 0.79234 0.79295 0.79458 1.19008 1.19672 1.18556 1.21276
0.89874 0.94600 1.52616 0.92304 1.18935 0.93033 0.79886 0.95418
1.45117 1.04691 1.09856 1.77991 1.16250 0.82613 0.83998 0.77723
1.90823 1.56184 1.45053 1.60772 1.44876 1.08411 1.04810 1.79523
1.21983 0.79422 0.98020 0.95933 0.90690 1.22224 1.03493 0.90302
0.97077 1.23329 1.02791 1.01692 0.90648 0.86134 1.23151 0.95004
0.98514 1.00837 1.23160 1.05046 0.91263 1.00100 0.87814 1.22332
1.01176 0.95068 0.95898 0.91816 0.97204 0.97451 0.76074 0.75627
0.89729 0.88388 0.87173 0.88219 0.89645 0.93566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16
2 C 0.03 1.57 5.47 84.65 0.46 2.04 16
3 Si 0.94 44.77 27.47 68.60 1.88 46.65 16
4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
6 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16
7 C -0.55 -30.70 9.83 25.60 0.25 -30.44 16
8 H 0.06 3.46 7.84 -2.92 -0.02 3.44 16
9 C 0.25 12.79 4.50 85.64 0.39 13.17 16
10 N -0.72 -30.32 5.55 -482.30 -2.68 -32.99 16
11 C 0.69 27.70 8.57 179.06 1.53 29.23 16
12 O -0.65 -31.19 15.99 -4.00 -0.06 -31.25 16
13 N -0.72 -20.40 5.14 -451.65 -2.32 -22.72 16
14 C 0.15 3.69 3.30 46.28 0.15 3.85 16
15 H 0.07 2.16 7.54 -2.39 -0.02 2.14 16
16 C -0.09 -1.51 6.21 31.67 0.20 -1.31 16
17 C -0.17 -2.46 6.87 -10.07 -0.07 -2.53 16
18 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16
19 C -0.14 -1.82 10.07 30.60 0.31 -1.52 16
20 C -0.18 -3.22 6.92 -10.07 -0.07 -3.29 16
21 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
22 C -0.11 -2.43 6.31 31.67 0.20 -2.23 16
23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
24 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16
25 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16
26 H 0.40 14.78 8.34 -92.71 -0.77 14.01 16
27 H 0.41 9.23 8.63 -92.71 -0.80 8.43 16
28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
Total: -1.00 -69.33 277.45 -0.04 -69.37
By element:
Atomic # 1 Polarization: 20.29 SS G_CDS: -0.51 Total: 19.78 kcal
Atomic # 6 Polarization: 3.62 SS G_CDS: 3.35 Total: 6.97 kcal
Atomic # 7 Polarization: -106.82 SS G_CDS: -4.70 Total: -111.52 kcal
Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.25 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal
Total: -69.33 -0.04 -69.37 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000335132336.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.861 kcal
(2) G-P(sol) polarization free energy of solvation -69.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds