Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86792 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47446 * 270.00155 * 3 2 1 5 5 H 1.48501 * 109.47228 * 29.99866 * 3 2 1 6 6 H 1.48501 * 109.47112 * 149.99771 * 3 2 1 7 7 C 1.37877 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99729 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46473 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99946 * 90.00426 * 10 9 7 12 12 O 1.21608 * 119.99840 * 4.66060 * 11 10 9 13 13 C 1.47101 * 119.99725 * 184.66141 * 11 10 9 14 14 C 1.32994 * 119.99900 * 174.59418 * 13 11 10 15 15 C 1.50702 * 119.99907 * 180.02562 * 14 13 11 16 16 N 1.46907 * 109.46777 * 125.00127 * 15 14 13 17 17 C 1.46495 * 119.99919 * 269.99531 * 10 9 7 18 18 C 1.53002 * 117.49832 * 12.84826 * 17 10 9 19 19 C 1.52999 * 117.50341 * 304.22476 * 17 10 9 20 20 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47150 * 60.00599 * 9 7 2 22 22 H 1.09002 * 109.47169 * 299.99908 * 9 7 2 23 23 H 1.08007 * 120.00316 * 354.59498 * 13 11 10 24 24 H 1.07998 * 120.00066 * 0.27639 * 14 13 11 25 25 H 1.09001 * 109.46958 * 244.99702 * 15 14 13 26 26 H 1.08991 * 109.47084 * 5.00244 * 15 14 13 27 27 H 1.00900 * 110.99743 * 180.02562 * 16 15 14 28 28 H 1.00897 * 110.99866 * 303.95603 * 16 15 14 29 29 H 1.09001 * 115.54772 * 158.54963 * 17 10 9 30 30 H 1.08998 * 117.49960 * 359.97438 * 18 17 10 31 31 H 1.09006 * 117.50059 * 145.01815 * 18 17 10 32 32 H 1.08999 * 117.50099 * 214.97585 * 19 17 10 33 33 H 1.09003 * 117.49627 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6409 -4.1249 1.1667 12 8 2.1826 -3.7207 2.2181 13 6 3.6732 -5.1729 1.1688 14 6 4.1827 -5.6021 2.3198 15 6 5.2407 -6.6754 2.3219 16 7 6.4207 -6.1982 3.0553 17 6 2.6790 -4.1694 -1.2692 18 6 2.3931 -3.3709 -2.5426 19 6 1.6261 -4.6648 -2.2627 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 4.0174 -5.5938 0.2355 24 1 3.8354 -5.1845 3.2532 25 1 4.8494 -7.5703 2.8059 26 1 5.5215 -6.9106 1.2954 27 1 7.1452 -6.9003 3.0706 28 1 6.7638 -5.3334 2.6649 29 1 3.6202 -4.7168 -1.2187 30 1 1.8506 -2.4315 -2.4365 31 1 3.1464 -3.3927 -3.3302 32 1 1.8747 -5.5378 -2.8660 33 1 0.5792 -4.5768 -1.9721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379483877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 10.880617 kcal Electronic energy + Delta-G solvation = -15225.340303 eV Core-core repulsion = 12673.439962 eV Total energy + Delta-G solvation = -2551.900342 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21924 -36.86973 -35.66535 -33.22668 -32.03462 -31.59394 -27.73255 -25.28234 -23.05611 -22.06667 -21.75653 -20.10200 -17.98700 -17.26149 -16.40073 -15.95957 -15.45529 -14.77969 -14.29085 -14.18824 -13.73605 -13.55743 -13.45323 -12.35610 -12.11480 -12.01449 -11.36322 -11.32035 -11.00374 -10.82290 -10.61692 -10.51109 -10.15437 -10.06735 -9.52454 -9.24963 -8.95718 -8.89593 -8.43208 -7.49173 -6.03732 -4.08480 1.72425 3.30368 3.37293 3.41749 3.80259 3.89501 4.41854 4.48604 4.55207 4.84902 5.05642 5.19567 5.29496 5.33182 5.41398 5.46676 5.56384 5.65737 6.00903 6.13325 6.43632 6.50719 6.60591 6.77798 6.93917 7.11265 7.23505 7.45444 7.55042 7.92946 8.23454 8.43408 8.90833 9.09991 9.56381 11.04041 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.007683 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.832195 B = 3643.768158 C = 4225.711796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.242 3.758 10 N -0.565 5.565 11 C 0.538 3.462 12 O -0.542 6.542 13 C -0.195 4.195 14 C -0.088 4.088 15 C 0.088 3.912 16 N -0.848 5.848 17 C 0.075 3.925 18 C -0.177 4.177 19 C -0.202 4.202 20 H 0.263 0.737 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.085 0.915 26 H 0.034 0.966 27 H 0.342 0.658 28 H 0.345 0.655 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -12.174 -3.100 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.123 3.877 10 N -0.294 5.294 11 C 0.327 3.673 12 O -0.421 6.421 13 C -0.217 4.217 14 C -0.108 4.108 15 C -0.042 4.042 16 N -0.378 5.378 17 C -0.032 4.032 18 C -0.215 4.215 19 C -0.241 4.241 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.138 0.862 24 H 0.148 0.852 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.361 -11.767 -1.909 14.561 hybrid contribution 0.945 0.842 -1.135 1.700 sum 9.306 -10.925 -3.044 14.670 Atomic orbital electron populations 1.69941 1.05973 1.27005 1.50455 1.24933 0.94872 0.99179 0.95127 0.86499 0.79884 0.83088 0.77986 1.20634 1.21098 1.19894 1.21408 0.93357 0.90448 1.50916 0.92407 1.19319 0.87669 0.82101 0.98563 1.47656 1.44699 1.34064 1.02977 1.18306 0.82659 0.82394 0.83916 1.90756 1.58466 1.62072 1.30853 1.22974 1.00270 0.99761 0.98667 1.23563 0.93918 0.94244 0.99067 1.20900 0.90378 0.96713 0.96230 1.58620 1.09764 1.09097 1.60324 1.21537 0.97384 1.01840 0.82396 1.23367 1.03204 0.97269 0.97638 1.23382 0.98759 0.98132 1.03813 0.92717 0.94744 0.93683 0.86222 0.85157 0.89663 0.94819 0.84545 0.84193 0.86508 0.86237 0.89030 0.89027 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.87 8.96 -34.44 -0.31 -15.18 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 6.43 4.47 -5.19 -0.02 6.41 16 10 N -0.57 -12.45 2.80 -168.86 -0.47 -12.92 16 11 C 0.54 11.85 7.61 -12.66 -0.10 11.75 16 12 O -0.54 -14.28 15.79 5.27 0.08 -14.20 16 13 C -0.19 -3.13 8.92 -37.81 -0.34 -3.47 16 14 C -0.09 -1.28 9.35 -36.13 -0.34 -1.61 16 15 C 0.09 0.93 7.23 -4.97 -0.04 0.89 16 16 N -0.85 -8.44 9.61 -11.41 -0.11 -8.55 16 17 C 0.07 1.27 6.09 -67.93 -0.41 0.86 16 18 C -0.18 -2.95 9.72 -26.73 -0.26 -3.21 16 19 C -0.20 -3.06 10.03 -26.73 -0.27 -3.33 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.03 0.92 6.26 -51.93 -0.33 0.59 16 22 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 23 H 0.12 1.54 5.92 -52.48 -0.31 1.23 16 24 H 0.13 2.20 7.50 -52.49 -0.39 1.81 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.31 7.82 -51.93 -0.41 -0.10 16 27 H 0.34 2.50 9.08 -39.29 -0.36 2.14 16 28 H 0.35 3.37 8.98 -39.29 -0.35 3.01 16 29 H 0.12 1.62 6.07 -51.93 -0.31 1.31 16 30 H 0.12 2.43 6.29 -51.93 -0.33 2.11 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.60 7.87 -51.93 -0.41 1.19 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -33.12 283.89 -7.08 -40.20 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.39 Total: 5.39 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.18 Total: -5.25 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.15 Total: -47.39 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.12 -7.08 -40.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379483877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.076 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds