Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86792 * 120.00054 * 2 1 4 4 H 1.48499 * 109.47446 * 270.00155 * 3 2 1 5 5 H 1.48501 * 109.47228 * 29.99866 * 3 2 1 6 6 H 1.48501 * 109.47112 * 149.99771 * 3 2 1 7 7 C 1.37877 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99729 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46473 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99946 * 90.00426 * 10 9 7 12 12 O 1.21608 * 119.99840 * 4.66060 * 11 10 9 13 13 C 1.47101 * 119.99725 * 184.66141 * 11 10 9 14 14 C 1.32994 * 119.99900 * 174.59418 * 13 11 10 15 15 C 1.50702 * 119.99907 * 180.02562 * 14 13 11 16 16 N 1.46907 * 109.46777 * 125.00127 * 15 14 13 17 17 C 1.46495 * 119.99919 * 269.99531 * 10 9 7 18 18 C 1.53002 * 117.49832 * 12.84826 * 17 10 9 19 19 C 1.52999 * 117.50341 * 304.22476 * 17 10 9 20 20 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47150 * 60.00599 * 9 7 2 22 22 H 1.09002 * 109.47169 * 299.99908 * 9 7 2 23 23 H 1.08007 * 120.00316 * 354.59498 * 13 11 10 24 24 H 1.07998 * 120.00066 * 0.27639 * 14 13 11 25 25 H 1.09001 * 109.46958 * 244.99702 * 15 14 13 26 26 H 1.08991 * 109.47084 * 5.00244 * 15 14 13 27 27 H 1.00900 * 110.99743 * 180.02562 * 16 15 14 28 28 H 1.00897 * 110.99866 * 303.95603 * 16 15 14 29 29 H 1.09001 * 115.54772 * 158.54963 * 17 10 9 30 30 H 1.08998 * 117.49960 * 359.97438 * 18 17 10 31 31 H 1.09006 * 117.50059 * 145.01815 * 18 17 10 32 32 H 1.08999 * 117.50099 * 214.97585 * 19 17 10 33 33 H 1.09003 * 117.49627 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6409 -4.1249 1.1667 12 8 2.1826 -3.7207 2.2181 13 6 3.6732 -5.1729 1.1688 14 6 4.1827 -5.6021 2.3198 15 6 5.2407 -6.6754 2.3219 16 7 6.4207 -6.1982 3.0553 17 6 2.6790 -4.1694 -1.2692 18 6 2.3931 -3.3709 -2.5426 19 6 1.6261 -4.6648 -2.2627 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 4.0174 -5.5938 0.2355 24 1 3.8354 -5.1845 3.2532 25 1 4.8494 -7.5703 2.8059 26 1 5.5215 -6.9106 1.2954 27 1 7.1452 -6.9003 3.0706 28 1 6.7638 -5.3334 2.6649 29 1 3.6202 -4.7168 -1.2187 30 1 1.8506 -2.4315 -2.4365 31 1 3.1464 -3.3927 -3.3302 32 1 1.8747 -5.5378 -2.8660 33 1 0.5792 -4.5768 -1.9721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379483877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -14.137740 kcal Electronic energy + Delta-G solvation = -15226.425181 eV Core-core repulsion = 12673.439962 eV Total energy + Delta-G solvation = -2552.985219 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88205 -38.36849 -36.70850 -35.25329 -33.80870 -32.82405 -29.69354 -26.63891 -24.88438 -23.45114 -23.08490 -21.44973 -19.46482 -18.76505 -18.57083 -17.20925 -16.76690 -16.40880 -16.05668 -15.43950 -15.24374 -14.91620 -14.52935 -14.35710 -13.55953 -13.40357 -13.06092 -12.98146 -12.62413 -12.51722 -12.28839 -12.23103 -12.12770 -11.51761 -11.42175 -10.66810 -10.65825 -10.49788 -9.63738 -9.24520 -8.23895 -6.39253 0.41428 1.34272 1.37592 1.48011 2.18630 2.35317 2.40372 3.04586 3.13188 3.55236 3.83136 3.91433 3.96298 4.15174 4.23581 4.27338 4.58629 4.74139 4.82063 4.85850 5.01012 5.09578 5.24213 5.34016 5.41481 5.46943 5.55643 5.81865 6.02868 6.19881 6.60820 6.67372 6.76726 7.24898 7.42406 8.82826 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.007683 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.832195 B = 3643.768158 C = 4225.711796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.261 3.739 10 N -0.573 5.573 11 C 0.523 3.477 12 O -0.606 6.606 13 C -0.203 4.203 14 C -0.065 4.065 15 C 0.095 3.905 16 N -0.860 5.860 17 C 0.056 3.944 18 C -0.184 4.184 19 C -0.180 4.180 20 H 0.267 0.733 21 H 0.026 0.974 22 H -0.008 1.008 23 H 0.164 0.836 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.359 0.641 28 H 0.347 0.653 29 H 0.162 0.838 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.025 -13.695 -4.659 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.139 3.861 10 N -0.301 5.301 11 C 0.315 3.685 12 O -0.490 6.490 13 C -0.224 4.224 14 C -0.085 4.085 15 C -0.035 4.035 16 N -0.393 5.393 17 C -0.048 4.048 18 C -0.221 4.221 19 C -0.219 4.219 20 H 0.076 0.924 21 H 0.043 0.957 22 H 0.010 0.990 23 H 0.182 0.818 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.174 0.826 28 H 0.159 0.841 29 H 0.179 0.821 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.128 -13.328 -3.515 17.715 hybrid contribution 0.058 1.267 -0.598 1.402 sum 11.186 -12.061 -4.113 16.956 Atomic orbital electron populations 1.70065 1.07605 1.28172 1.51053 1.25870 0.95794 1.03066 0.94428 0.85402 0.78231 0.78223 0.78895 1.18590 1.20617 1.19792 1.21601 0.93078 0.91615 1.51093 0.92997 1.18715 0.88089 0.83784 0.95463 1.47649 1.43916 1.33045 1.05472 1.19392 0.83150 0.83102 0.82816 1.90711 1.60841 1.64504 1.32970 1.22804 0.99454 0.99050 1.01103 1.23776 0.93703 0.93852 0.97209 1.20902 0.89185 0.95099 0.98323 1.58558 1.10288 1.09895 1.60541 1.22109 0.99808 1.02726 0.80118 1.23332 1.04246 0.95940 0.98619 1.23436 0.96869 0.98944 1.02630 0.92388 0.95650 0.98968 0.81828 0.88461 0.88187 0.91876 0.82557 0.84073 0.82052 0.90870 0.85229 0.84251 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -31.70 8.96 25.60 0.23 -31.47 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.26 14.70 4.47 85.63 0.38 15.08 16 10 N -0.57 -25.87 2.80 -806.39 -2.26 -28.13 16 11 C 0.52 23.63 7.61 86.57 0.66 24.29 16 12 O -0.61 -34.01 15.79 -4.06 -0.06 -34.07 16 13 C -0.20 -6.14 8.92 23.43 0.21 -5.93 16 14 C -0.06 -1.78 9.35 24.52 0.23 -1.55 16 15 C 0.09 1.64 7.23 85.56 0.62 2.26 16 16 N -0.86 -14.50 9.61 -190.00 -1.83 -16.33 16 17 C 0.06 1.81 6.09 44.99 0.27 2.08 16 18 C -0.18 -5.85 9.72 30.60 0.30 -5.55 16 19 C -0.18 -5.06 10.03 30.59 0.31 -4.75 16 20 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 21 H 0.03 1.45 6.26 -2.39 -0.01 1.44 16 22 H -0.01 -0.51 7.36 -2.39 -0.02 -0.53 16 23 H 0.16 3.43 5.92 -2.91 -0.02 3.41 16 24 H 0.10 3.36 7.50 -2.91 -0.02 3.33 16 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 0.79 7.82 -2.39 -0.02 0.77 16 27 H 0.36 3.99 9.08 -89.69 -0.81 3.18 16 28 H 0.35 5.81 8.98 -89.70 -0.81 5.00 16 29 H 0.16 3.71 6.07 -2.39 -0.01 3.69 16 30 H 0.07 3.06 6.29 -2.39 -0.02 3.04 16 31 H 0.13 3.10 8.14 -2.38 -0.02 3.08 16 32 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.07 2.31 7.87 -2.39 -0.02 2.29 16 Total: -1.00 -78.48 283.89 1.34 -77.14 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -0.49 Total: 15.39 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 3.67 Total: -4.65 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -3.80 Total: -101.62 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.06 Total: -34.07 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.48 1.34 -77.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379483877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.999 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds