Wall clock time and date at job start Mon Mar 30 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48497 * 109.46892 * 240.00061 * 3 2 1 5 5 H 1.48499 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46891 * 120.00166 * 3 2 1 7 7 C 1.37881 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99852 * 160.35750 * 7 2 1 9 9 C 1.50702 * 120.00027 * 340.36125 * 7 2 1 10 10 C 1.53001 * 115.55103 * 324.84466 * 9 7 2 11 11 N 1.46904 * 109.47069 * 279.02055 * 10 9 7 12 12 C 1.47472 * 110.99915 * 260.57259 * 11 10 9 13 13 C 1.53513 * 87.93551 * 221.29860 * 12 11 10 14 14 C 1.50700 * 114.17068 * 139.67131 * 13 12 11 15 15 N 1.34776 * 119.99877 * 86.16224 * 14 13 12 16 16 O 1.21279 * 120.00037 * 266.16071 * 14 13 12 17 17 C 1.47486 * 110.99856 * 164.60194 * 11 10 9 18 18 C 1.52996 * 117.51887 * 110.54948 * 9 7 2 19 19 C 1.52997 * 117.49742 * 179.17875 * 9 7 2 20 20 H 0.96999 * 119.99711 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47353 * 159.01607 * 10 9 7 22 22 H 1.09007 * 109.47004 * 39.01465 * 10 9 7 23 23 H 1.09008 * 113.47767 * 336.06937 * 12 11 10 24 24 H 1.09004 * 113.47402 * 106.52949 * 12 11 10 25 25 H 1.09004 * 114.16645 * 272.38032 * 13 12 11 26 26 H 0.97000 * 120.00199 * 359.97438 * 15 14 13 27 27 H 0.96997 * 119.99670 * 179.97438 * 15 14 13 28 28 H 1.08999 * 113.47697 * 253.46713 * 17 11 10 29 29 H 1.08996 * 113.47254 * 23.87737 * 17 11 10 30 30 H 1.09004 * 117.49889 * 214.97039 * 18 9 7 31 31 H 1.08998 * 117.49771 * 359.97438 * 18 9 7 32 32 H 1.09001 * 117.50067 * 359.97176 * 19 9 7 33 33 H 1.09000 * 117.50346 * 144.99458 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0373 -1.2212 -0.3149 9 6 1.3167 -2.4614 0.4375 10 6 0.2979 -2.3025 1.5679 11 7 1.0004 -2.2562 2.8573 12 6 0.9579 -3.5681 3.5296 13 6 0.7002 -2.8226 4.8466 14 6 -0.3165 -3.4837 5.7412 15 7 0.0679 -4.4479 6.6008 16 8 -1.4807 -3.1480 5.6876 17 6 0.1175 -1.7445 3.9221 18 6 1.0247 -3.5139 -0.6338 19 6 2.1296 -3.7569 0.3962 20 1 -0.4850 0.8401 0.0004 21 1 -0.3897 -3.1482 1.5589 22 1 -0.2614 -1.3778 1.4256 23 1 0.1218 -4.1916 3.2128 24 1 1.9106 -4.0974 3.5095 25 1 1.6057 -2.5183 5.3717 26 1 0.9990 -4.7167 6.6434 27 1 -0.5864 -4.8732 7.1768 28 1 0.3579 -0.7283 4.2345 29 1 -0.9429 -1.8804 3.7095 30 1 0.1068 -4.0931 -0.5334 31 1 1.3297 -3.2896 -1.6560 32 1 3.1618 -3.6927 0.0517 33 1 1.9387 -4.4960 1.1743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382219317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:48 Heat of formation + Delta-G solvation = 25.870718 kcal Electronic energy + Delta-G solvation = -15676.721526 eV Core-core repulsion = 13125.471204 eV Total energy + Delta-G solvation = -2551.250322 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37601 -38.16249 -36.04994 -33.62682 -32.12796 -29.57630 -25.70383 -25.44541 -24.54064 -21.30355 -20.94286 -19.30530 -18.93691 -17.32020 -16.81088 -16.02746 -15.33556 -14.72470 -14.48781 -14.29154 -13.84164 -13.09900 -13.01704 -12.36714 -12.10066 -11.86403 -11.11395 -10.98204 -10.76768 -10.55236 -10.32116 -10.28177 -9.93481 -9.80898 -9.72001 -9.21490 -9.02065 -8.63943 -8.08411 -7.84403 -6.03366 -3.96736 2.66193 3.34817 3.40420 3.45761 3.54637 4.45543 4.55147 4.64340 5.04894 5.12960 5.31757 5.54988 5.79604 5.84864 5.95696 6.12113 6.18138 6.31592 6.34887 6.55775 6.72145 6.75062 6.75382 6.93559 7.01184 7.30463 7.31310 7.39804 7.72011 7.95962 8.07594 8.28829 8.53585 8.95872 9.59173 11.01530 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.008230 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.242756 B = 3401.560278 C = 3879.764132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.475 4.475 8 H 0.058 0.942 9 C 0.072 3.928 10 C 0.046 3.954 11 N -0.443 5.443 12 C 0.017 3.983 13 C -0.153 4.153 14 C 0.528 3.472 15 N -0.857 5.857 16 O -0.543 6.543 17 C 0.024 3.976 18 C -0.209 4.209 19 C -0.205 4.205 20 H 0.262 0.738 21 H 0.012 0.988 22 H 0.128 0.872 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.402 0.598 27 H 0.397 0.603 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -7.145 10.597 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.512 4.512 8 H 0.076 0.924 9 C 0.071 3.929 10 C -0.081 4.081 11 N -0.164 5.164 12 C -0.112 4.112 13 C -0.175 4.175 14 C 0.313 3.687 15 N -0.420 5.420 16 O -0.419 6.419 17 C -0.106 4.106 18 C -0.248 4.248 19 C -0.242 4.242 20 H 0.072 0.928 21 H 0.030 0.970 22 H 0.145 0.855 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.139 0.861 26 H 0.230 0.770 27 H 0.227 0.773 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.493 -6.306 10.209 12.092 hybrid contribution -0.108 -0.054 0.340 0.361 sum 1.385 -6.361 10.549 12.396 Atomic orbital electron populations 1.69864 1.06163 1.26686 1.48766 1.24873 0.94575 0.99001 0.94401 0.86741 0.79972 0.83075 0.78745 1.20401 1.21406 1.19983 1.20411 0.97042 0.90566 1.43187 0.92357 1.18748 0.94317 0.87861 0.91967 1.22587 0.94828 1.03192 0.87529 1.68959 1.38301 1.07848 1.01340 1.23801 1.01509 0.94982 0.90936 1.23049 0.99066 1.00230 0.95125 1.20650 0.89478 0.78913 0.79635 1.43905 1.13844 1.41568 1.42725 1.90730 1.19487 1.63368 1.68354 1.23611 0.97595 0.98188 0.91205 1.23025 0.97684 1.07952 0.96124 1.22767 0.95737 1.03661 1.02080 0.92842 0.97018 0.85484 0.91982 0.89706 0.86082 0.77026 0.77324 0.89856 0.90586 0.92130 0.90496 0.90927 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 10.97 55.43 0.61 -23.94 16 2 C 0.07 2.01 5.09 -17.82 -0.09 1.92 16 3 Si 0.89 21.23 29.58 -169.99 -5.03 16.20 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.48 -13.12 9.00 -34.44 -0.31 -13.43 16 8 H 0.06 1.62 7.89 -52.49 -0.41 1.20 16 9 C 0.07 1.81 1.96 -155.66 -0.30 1.50 16 10 C 0.05 1.09 4.59 -3.82 -0.02 1.07 16 11 N -0.44 -9.13 6.29 -244.63 -1.54 -10.67 16 12 C 0.02 0.29 6.37 -7.55 -0.05 0.24 16 13 C -0.15 -2.21 4.48 -91.24 -0.41 -2.61 16 14 C 0.53 7.43 7.66 -10.99 -0.08 7.35 16 15 N -0.86 -7.78 8.87 31.22 0.28 -7.51 16 16 O -0.54 -10.01 16.78 5.56 0.09 -9.92 16 17 C 0.02 0.43 6.99 -7.54 -0.05 0.38 16 18 C -0.21 -4.90 9.88 -26.73 -0.26 -5.16 16 19 C -0.20 -4.53 9.77 -26.73 -0.26 -4.79 16 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.01 0.27 7.01 -51.93 -0.36 -0.10 16 22 H 0.13 3.38 5.13 -51.93 -0.27 3.12 16 23 H 0.06 1.05 7.34 -51.92 -0.38 0.67 16 24 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 25 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.40 2.45 8.83 -40.82 -0.36 2.09 16 27 H 0.40 3.10 8.93 -40.82 -0.36 2.73 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.51 7.22 -51.93 -0.38 1.14 16 30 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 31 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.06 1.27 7.29 -51.93 -0.38 0.89 16 LS Contribution 276.27 15.07 4.16 4.16 Total: -1.00 -31.31 276.27 -7.84 -39.14 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.57 Total: 6.06 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.84 Total: -13.54 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.65 Total: -42.11 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.31 -7.84 -39.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382219317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.013 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds