Wall clock time and date at job start Mon Mar 30 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48497 * 109.46892 * 240.00061 * 3 2 1 5 5 H 1.48499 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46891 * 120.00166 * 3 2 1 7 7 C 1.37881 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99852 * 160.35750 * 7 2 1 9 9 C 1.50702 * 120.00027 * 340.36125 * 7 2 1 10 10 C 1.53001 * 115.55103 * 324.84466 * 9 7 2 11 11 N 1.46904 * 109.47069 * 279.02055 * 10 9 7 12 12 C 1.47472 * 110.99915 * 260.57259 * 11 10 9 13 13 C 1.53513 * 87.93551 * 221.29860 * 12 11 10 14 14 C 1.50700 * 114.17068 * 139.67131 * 13 12 11 15 15 N 1.34776 * 119.99877 * 86.16224 * 14 13 12 16 16 O 1.21279 * 120.00037 * 266.16071 * 14 13 12 17 17 C 1.47486 * 110.99856 * 164.60194 * 11 10 9 18 18 C 1.52996 * 117.51887 * 110.54948 * 9 7 2 19 19 C 1.52997 * 117.49742 * 179.17875 * 9 7 2 20 20 H 0.96999 * 119.99711 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47353 * 159.01607 * 10 9 7 22 22 H 1.09007 * 109.47004 * 39.01465 * 10 9 7 23 23 H 1.09008 * 113.47767 * 336.06937 * 12 11 10 24 24 H 1.09004 * 113.47402 * 106.52949 * 12 11 10 25 25 H 1.09004 * 114.16645 * 272.38032 * 13 12 11 26 26 H 0.97000 * 120.00199 * 359.97438 * 15 14 13 27 27 H 0.96997 * 119.99670 * 179.97438 * 15 14 13 28 28 H 1.08999 * 113.47697 * 253.46713 * 17 11 10 29 29 H 1.08996 * 113.47254 * 23.87737 * 17 11 10 30 30 H 1.09004 * 117.49889 * 214.97039 * 18 9 7 31 31 H 1.08998 * 117.49771 * 359.97438 * 18 9 7 32 32 H 1.09001 * 117.50067 * 359.97176 * 19 9 7 33 33 H 1.09000 * 117.50346 * 144.99458 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0373 -1.2212 -0.3149 9 6 1.3167 -2.4614 0.4375 10 6 0.2979 -2.3025 1.5679 11 7 1.0004 -2.2562 2.8573 12 6 0.9579 -3.5681 3.5296 13 6 0.7002 -2.8226 4.8466 14 6 -0.3165 -3.4837 5.7412 15 7 0.0679 -4.4479 6.6008 16 8 -1.4807 -3.1480 5.6876 17 6 0.1175 -1.7445 3.9221 18 6 1.0247 -3.5139 -0.6338 19 6 2.1296 -3.7569 0.3962 20 1 -0.4850 0.8401 0.0004 21 1 -0.3897 -3.1482 1.5589 22 1 -0.2614 -1.3778 1.4256 23 1 0.1218 -4.1916 3.2128 24 1 1.9106 -4.0974 3.5095 25 1 1.6057 -2.5183 5.3717 26 1 0.9990 -4.7167 6.6434 27 1 -0.5864 -4.8732 7.1768 28 1 0.3579 -0.7283 4.2345 29 1 -0.9429 -1.8804 3.7095 30 1 0.1068 -4.0931 -0.5334 31 1 1.3297 -3.2896 -1.6560 32 1 3.1618 -3.6927 0.0517 33 1 1.9387 -4.4960 1.1743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382219317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:48 Heat of formation + Delta-G solvation = 0.762187 kcal Electronic energy + Delta-G solvation = -15677.810313 eV Core-core repulsion = 13125.471204 eV Total energy + Delta-G solvation = -2552.339110 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69928 -39.51980 -37.81590 -34.62962 -34.18581 -31.08102 -27.67870 -26.85667 -26.14038 -22.93510 -22.46514 -20.92165 -20.41233 -18.60228 -17.86242 -17.80965 -16.69631 -16.63561 -15.97252 -15.69872 -15.45097 -14.75274 -14.63397 -13.77995 -13.72565 -13.53176 -12.99942 -12.78830 -12.53921 -12.31712 -12.09322 -11.93317 -11.53111 -11.13390 -11.10945 -10.83905 -10.65180 -10.54031 -9.91206 -9.57963 -8.09216 -6.08621 1.43024 1.47354 1.54277 1.54621 2.46515 2.53773 3.01111 3.23058 3.34899 3.72885 3.98772 4.23638 4.27710 4.39206 4.41014 4.49220 4.67946 4.74221 4.81196 4.89978 4.97985 5.09596 5.16077 5.21559 5.51322 5.57990 5.72397 5.91473 6.08611 6.31050 6.47576 6.50038 6.88778 7.35789 7.49205 8.94074 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.008230 C = 0.007215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.242756 B = 3401.560278 C = 3879.764132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.497 4.497 8 H 0.048 0.952 9 C 0.039 3.961 10 C 0.059 3.941 11 N -0.463 5.463 12 C 0.021 3.979 13 C -0.125 4.125 14 C 0.529 3.471 15 N -0.828 5.828 16 O -0.594 6.594 17 C 0.013 3.987 18 C -0.214 4.214 19 C -0.177 4.177 20 H 0.261 0.739 21 H 0.009 0.991 22 H 0.094 0.906 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.154 0.846 26 H 0.421 0.579 27 H 0.408 0.592 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -8.233 12.151 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.039 3.961 10 C -0.070 4.070 11 N -0.185 5.185 12 C -0.108 4.108 13 C -0.146 4.146 14 C 0.314 3.686 15 N -0.391 5.391 16 O -0.474 6.474 17 C -0.117 4.117 18 C -0.253 4.253 19 C -0.214 4.214 20 H 0.070 0.930 21 H 0.027 0.973 22 H 0.112 0.888 23 H 0.074 0.926 24 H 0.128 0.872 25 H 0.171 0.829 26 H 0.252 0.748 27 H 0.240 0.760 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.006 -7.440 11.790 14.262 hybrid contribution -0.549 0.227 -0.127 0.608 sum 2.457 -7.213 11.663 13.932 Atomic orbital electron populations 1.69992 1.07245 1.27138 1.49481 1.25503 0.95221 1.01729 0.94255 0.85853 0.78818 0.79651 0.78758 1.19896 1.21137 1.19730 1.20658 0.96763 0.92236 1.43692 0.93346 1.18876 0.95971 0.88138 0.93152 1.22255 0.94383 1.01247 0.89076 1.68895 1.38172 1.10892 1.00498 1.23812 1.02518 0.93414 0.91071 1.22915 0.99686 0.97551 0.94483 1.20520 0.88409 0.79559 0.80118 1.43620 1.15297 1.39404 1.40808 1.90727 1.21349 1.65225 1.70104 1.23584 0.96327 0.99521 0.92232 1.23006 0.98930 1.07687 0.95654 1.22759 0.95219 1.01967 1.01474 0.92997 0.97293 0.88839 0.92625 0.87237 0.82856 0.74762 0.76038 0.90200 0.92862 0.91147 0.91513 0.90697 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.51 10.97 21.45 0.24 -51.28 16 2 C 0.03 1.81 5.09 84.66 0.43 2.24 16 3 Si 0.94 43.85 29.58 68.60 2.03 45.88 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.50 -27.61 9.00 25.60 0.23 -27.38 16 8 H 0.05 2.70 7.89 -2.91 -0.02 2.68 16 9 C 0.04 1.98 1.96 -52.93 -0.10 1.87 16 10 C 0.06 2.81 4.59 86.30 0.40 3.20 16 11 N -0.46 -18.72 6.29 -927.87 -5.83 -24.56 16 12 C 0.02 0.64 6.37 83.58 0.53 1.17 16 13 C -0.12 -3.29 4.48 -11.19 -0.05 -3.34 16 14 C 0.53 13.68 7.66 87.66 0.67 14.35 16 15 N -0.83 -12.07 8.87 -173.54 -1.54 -13.61 16 16 O -0.59 -21.50 16.78 -3.03 -0.05 -21.55 16 17 C 0.01 0.48 6.99 83.57 0.58 1.06 16 18 C -0.21 -9.93 9.88 30.59 0.30 -9.63 16 19 C -0.18 -7.49 9.77 30.59 0.30 -7.19 16 20 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 21 H 0.01 0.42 7.01 -2.39 -0.02 0.40 16 22 H 0.09 5.15 5.13 -2.38 -0.01 5.14 16 23 H 0.06 1.78 7.34 -2.38 -0.02 1.76 16 24 H 0.11 2.78 8.08 -2.38 -0.02 2.76 16 25 H 0.15 3.07 8.14 -2.38 -0.02 3.05 16 26 H 0.42 3.19 8.83 -92.71 -0.82 2.37 16 27 H 0.41 5.00 8.93 -92.71 -0.83 4.17 16 28 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.05 2.19 7.22 -2.39 -0.02 2.18 16 30 H 0.07 3.07 8.08 -2.38 -0.02 3.05 16 31 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.09 3.27 7.29 -2.39 -0.02 3.25 16 Total: -1.00 -68.65 276.27 -2.39 -71.04 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.52 Total: 17.70 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.29 Total: -23.62 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -7.14 Total: -89.44 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.65 -2.39 -71.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382219317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.798 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds