Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.47128 * 29.99886 * 3 2 1 6 6 H 1.48494 * 109.47287 * 149.99410 * 3 2 1 7 7 C 1.37871 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99705 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.35451 * 126.77702 * 90.00119 * 15 14 13 17 17 C 1.41379 * 103.99089 * 179.97438 * 16 15 14 18 18 N 1.30183 * 106.39293 * 359.97438 * 17 16 15 19 19 O 1.20926 * 111.60310 * 359.72622 * 18 17 16 20 20 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 22 22 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 23 23 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 24 24 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 25 25 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 26 26 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 27 27 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 28 28 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 29 29 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 1.07999 * 128.00827 * 359.97438 * 16 15 14 33 33 H 1.07990 * 126.80804 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5307 -4.0788 0.0033 14 6 8.0571 -5.4503 0.0032 15 6 9.5636 -5.4101 0.0044 16 6 10.3734 -5.3888 1.0900 17 6 11.6768 -5.3544 0.5435 18 7 11.5330 -5.3586 -0.7503 19 8 10.3669 -5.3950 -1.0685 20 1 -0.4849 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8753 -0.6803 -0.8889 23 1 3.6586 -3.1501 -0.8891 24 1 3.6579 -3.1505 0.8908 25 1 5.9142 -2.1229 0.8927 26 1 5.9156 -2.1223 -0.8873 27 1 5.6990 -4.5928 -0.8875 28 1 5.6977 -4.5927 0.8924 29 1 7.8926 -3.5529 -0.7780 30 1 7.7072 -5.9738 0.8929 31 1 7.7080 -5.9734 -0.8870 32 1 10.0892 -5.3964 2.1319 33 1 12.6074 -5.3296 1.0909 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385181596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = 44.055616 kcal Electronic energy + Delta-G solvation = -14290.128036 eV Core-core repulsion = 11739.666270 eV Total energy + Delta-G solvation = -2550.461766 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.14523 -37.17758 -34.68475 -34.01599 -32.67353 -31.56545 -28.94732 -26.08194 -23.80351 -23.68422 -21.63454 -21.28840 -20.03822 -17.78443 -17.58037 -16.64329 -16.20025 -15.40274 -14.73697 -14.62169 -14.19444 -13.72252 -13.38201 -13.02368 -12.66840 -12.40730 -11.82498 -11.80350 -11.52852 -11.15937 -10.80271 -10.70480 -10.60204 -9.89440 -9.78376 -9.68522 -9.46796 -9.14715 -8.66774 -8.51807 -6.02631 -4.00404 1.18883 2.04275 2.80008 3.32438 3.39800 3.44236 4.08817 4.12055 4.28918 4.47279 4.79053 4.92688 5.07703 5.26120 5.31379 5.33202 5.36088 5.48066 5.73907 5.77633 5.96886 6.03111 6.32665 6.62886 6.70921 6.76553 6.97962 7.11905 7.34114 7.47235 7.82376 7.98894 8.56225 9.02496 9.60388 11.10988 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.065003 B = 0.003639 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.644046 B = 7692.865313 C = 7921.051690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.059 3.941 13 N -0.688 5.688 14 C 0.138 3.862 15 C -0.026 4.026 16 C -0.215 4.215 17 C -0.014 4.014 18 N -0.368 5.368 19 O 0.095 5.905 20 H 0.262 0.738 21 H 0.015 0.985 22 H 0.010 0.990 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.345 0.655 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.173 0.827 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.784 -11.307 1.514 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.069 4.069 13 N -0.320 5.320 14 C 0.008 3.992 15 C -0.090 4.090 16 C -0.238 4.238 17 C -0.192 4.192 18 N -0.071 5.071 19 O 0.029 5.971 20 H 0.072 0.928 21 H 0.034 0.966 22 H 0.028 0.972 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.190 0.810 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 20.533 -11.106 1.157 23.373 hybrid contribution -0.068 0.682 -0.024 0.686 sum 20.465 -10.423 1.133 22.995 Atomic orbital electron populations 1.69923 1.06325 1.26852 1.51400 1.25053 0.94740 0.99239 0.94616 0.86758 0.80381 0.83557 0.78478 1.20347 1.21434 1.18961 1.21189 0.89693 0.94406 1.50555 0.91116 1.19572 0.96961 0.92455 0.96190 1.21416 0.91597 0.99885 1.01030 1.21680 0.97635 0.94248 1.02143 1.22116 0.84877 0.99055 1.00862 1.60588 1.09219 1.11545 1.50619 1.20375 0.83208 0.92300 1.03313 1.24504 0.95830 1.02575 0.86116 1.22598 0.91538 1.08402 1.01221 1.25095 1.00309 1.03396 0.90377 1.73898 0.97255 1.18775 1.17150 1.84814 1.11470 1.67232 1.33629 0.92787 0.96621 0.97188 0.92957 0.92724 0.91518 0.92585 0.94786 0.90632 0.83658 0.87558 0.92655 0.80951 0.79283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -1.92 5.15 -26.73 -0.14 -2.06 16 11 C -0.12 -1.79 5.47 -26.73 -0.15 -1.94 16 12 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 13 N -0.69 -7.29 6.49 -115.05 -0.75 -8.04 16 14 C 0.14 1.18 6.25 -4.97 -0.03 1.14 16 15 C -0.03 -0.25 7.00 -35.30 -0.25 -0.50 16 16 C -0.22 -1.88 11.09 -39.38 -0.44 -2.31 16 17 C -0.01 -0.12 12.17 -17.06 -0.21 -0.33 16 18 N -0.37 -4.32 12.07 30.36 0.37 -3.96 16 19 O 0.10 1.08 11.20 17.16 0.19 1.27 16 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 21 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 22 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.35 3.61 8.72 -39.29 -0.34 3.27 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -31.90 284.98 -6.48 -38.38 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.92 Total: -2.53 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.77 Total: -19.27 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.39 Total: -39.42 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.19 Total: 1.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.90 -6.48 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.436 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds