Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.47128 * 29.99886 * 3 2 1 6 6 H 1.48494 * 109.47287 * 149.99410 * 3 2 1 7 7 C 1.37871 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99705 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.35451 * 126.77702 * 90.00119 * 15 14 13 17 17 C 1.41379 * 103.99089 * 179.97438 * 16 15 14 18 18 N 1.30183 * 106.39293 * 359.97438 * 17 16 15 19 19 O 1.20926 * 111.60310 * 359.72622 * 18 17 16 20 20 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 22 22 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 23 23 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 24 24 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 25 25 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 26 26 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 27 27 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 28 28 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 29 29 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 1.07999 * 128.00827 * 359.97438 * 16 15 14 33 33 H 1.07990 * 126.80804 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5307 -4.0788 0.0033 14 6 8.0571 -5.4503 0.0032 15 6 9.5636 -5.4101 0.0044 16 6 10.3734 -5.3888 1.0900 17 6 11.6768 -5.3544 0.5435 18 7 11.5330 -5.3586 -0.7503 19 8 10.3669 -5.3950 -1.0685 20 1 -0.4849 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8753 -0.6803 -0.8889 23 1 3.6586 -3.1501 -0.8891 24 1 3.6579 -3.1505 0.8908 25 1 5.9142 -2.1229 0.8927 26 1 5.9156 -2.1223 -0.8873 27 1 5.6990 -4.5928 -0.8875 28 1 5.6977 -4.5927 0.8924 29 1 7.8926 -3.5529 -0.7780 30 1 7.7072 -5.9738 0.8929 31 1 7.7080 -5.9734 -0.8870 32 1 10.0892 -5.3964 2.1319 33 1 12.6074 -5.3296 1.0909 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385181596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = 22.320434 kcal Electronic energy + Delta-G solvation = -14291.070544 eV Core-core repulsion = 11739.666270 eV Total energy + Delta-G solvation = -2551.404274 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.87158 -38.12112 -36.13641 -34.81800 -34.33968 -32.80573 -30.39897 -27.30192 -25.13215 -24.41620 -22.68892 -22.28442 -21.65012 -18.87787 -18.54535 -18.26608 -17.09792 -16.37754 -16.11550 -15.72800 -15.62060 -14.77279 -14.42944 -14.35454 -13.88469 -13.70407 -13.39223 -13.08778 -12.85228 -12.33222 -12.22399 -12.03823 -11.73005 -11.41952 -11.36448 -11.29517 -11.21912 -10.74870 -10.43080 -9.46389 -8.28452 -6.32284 0.47032 1.36998 1.37673 1.38920 1.51366 2.12121 2.37655 3.07181 3.26276 3.50058 3.63659 4.09709 4.16250 4.22446 4.31512 4.50661 4.57502 4.66976 4.72403 4.78832 4.85392 4.95230 5.16134 5.17968 5.22827 5.30658 5.61316 5.68850 5.70809 5.93478 6.29702 6.31425 6.76592 7.27597 7.32742 8.88552 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.065003 B = 0.003639 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.644046 B = 7692.865313 C = 7921.051690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.031 0.969 9 C -0.014 4.014 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.069 3.931 13 N -0.692 5.692 14 C 0.141 3.859 15 C -0.034 4.034 16 C -0.214 4.214 17 C -0.011 4.011 18 N -0.401 5.401 19 O 0.075 5.925 20 H 0.266 0.734 21 H 0.018 0.982 22 H 0.016 0.984 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.345 0.655 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.195 0.805 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.908 -11.055 2.121 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.052 4.052 10 C -0.133 4.133 11 C -0.147 4.147 12 C -0.060 4.060 13 N -0.325 5.325 14 C 0.011 3.989 15 C -0.098 4.098 16 C -0.236 4.236 17 C -0.189 4.189 18 N -0.108 5.108 19 O 0.011 5.989 20 H 0.075 0.925 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.212 0.788 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 22.657 -10.876 1.757 25.193 hybrid contribution -0.774 0.521 -0.184 0.951 sum 21.883 -10.355 1.573 24.260 Atomic orbital electron populations 1.70080 1.08355 1.28143 1.52947 1.26076 0.95647 1.03705 0.94198 0.85614 0.79492 0.78085 0.79188 1.19191 1.21012 1.16944 1.21597 0.92499 0.93043 1.50050 0.95041 1.19561 0.93540 0.95729 0.96339 1.21288 0.94632 0.96693 1.00722 1.21501 0.94330 0.96624 1.02225 1.21912 0.85785 0.96789 1.01507 1.60529 1.08233 1.12904 1.50791 1.20454 0.82532 0.91279 1.04590 1.24767 0.96252 1.02640 0.86099 1.22956 0.91130 1.07454 1.02076 1.25660 1.01771 1.01668 0.89811 1.73895 0.97645 1.20592 1.18641 1.84778 1.11636 1.67970 1.34477 0.92545 0.96351 0.96556 0.93332 0.93116 0.91752 0.92176 0.94213 0.90025 0.83663 0.85880 0.91767 0.78760 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 8 H 0.03 2.01 7.99 -2.90 -0.02 1.99 16 9 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 10 C -0.10 -3.52 5.15 30.59 0.16 -3.37 16 11 C -0.11 -3.04 5.47 30.59 0.17 -2.87 16 12 C 0.07 1.46 5.69 86.30 0.49 1.95 16 13 N -0.69 -12.96 6.49 -517.92 -3.36 -16.32 16 14 C 0.14 2.05 6.25 85.55 0.53 2.59 16 15 C -0.03 -0.58 7.00 25.04 0.18 -0.41 16 16 C -0.21 -3.21 11.09 22.40 0.25 -2.96 16 17 C -0.01 -0.18 12.17 85.71 1.04 0.86 16 18 N -0.40 -9.05 12.07 -59.25 -0.72 -9.76 16 19 O 0.07 1.63 11.20 71.59 0.80 2.43 16 20 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 21 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 22 H 0.02 0.73 7.57 -2.38 -0.02 0.71 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.35 6.49 8.72 -89.69 -0.78 5.71 16 30 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.22 2.00 8.06 -2.92 -0.02 1.98 16 Total: -1.00 -69.35 284.98 2.81 -66.55 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.25 Total: 6.05 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.65 Total: -35.21 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -3.78 Total: -86.43 kcal Atomic # 8 Polarization: 1.63 SS G_CDS: 0.80 Total: 2.43 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -69.35 2.81 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.868 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds