Wall clock time and date at job start Mon Mar 30 2020 03:30:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86804 * 119.99614 * 2 1
4 4 H 1.48505 * 109.46617 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.46892 * 299.99507 * 3 2 1
6 6 H 1.48496 * 109.47126 * 59.99983 * 3 2 1
7 7 C 1.37876 * 119.99954 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99739 * 171.19532 * 7 2 1
9 9 C 1.50700 * 120.00170 * 351.19335 * 7 2 1
10 10 C 1.52997 * 115.54658 * 324.35051 * 9 7 2
11 11 N 1.46508 * 109.46561 * 186.03619 * 10 9 7
12 12 C 1.46382 * 119.33180 * 268.87763 * 11 10 9
13 13 C 1.53240 * 109.17199 * 209.00823 * 12 11 10
14 14 C 1.53239 * 108.55858 * 304.55093 * 13 12 11
15 15 N 1.46380 * 109.15604 * 55.48349 * 14 13 12
16 16 C 1.34134 * 119.32982 * 88.88122 * 11 10 9
17 17 O 1.21585 * 118.69606 * 359.45020 * 16 11 10
18 18 C 1.52997 * 117.49549 * 110.01715 * 9 7 2
19 19 C 1.52994 * 117.49927 * 178.67918 * 9 7 2
20 20 H 0.97008 * 120.00388 * 5.00695 * 1 2 3
21 21 H 1.08994 * 109.47459 * 66.04121 * 10 9 7
22 22 H 1.08998 * 109.47181 * 306.03204 * 10 9 7
23 23 H 1.09004 * 109.48438 * 89.11041 * 12 11 10
24 24 H 1.09008 * 109.53953 * 328.93168 * 12 11 10
25 25 H 1.08998 * 109.62061 * 184.83060 * 13 12 11
26 26 H 1.08995 * 109.62002 * 64.27659 * 13 12 11
27 27 H 1.09004 * 109.52367 * 175.38592 * 14 13 12
28 28 H 1.09001 * 109.52913 * 295.57485 * 14 13 12
29 29 H 0.96996 * 119.32894 * 150.93300 * 15 14 13
30 30 H 1.08999 * 117.49978 * 214.99803 * 18 9 7
31 31 H 1.09001 * 117.50224 * 0.02950 * 18 9 7
32 32 H 1.09008 * 117.49899 * 359.97438 * 19 9 7
33 33 H 1.08993 * 117.50232 * 144.97470 * 19 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3964 -1.2126
6 1 1.8903 2.3965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0750 -1.1996 -0.1426
9 6 1.2644 -2.4914 0.2009
10 6 0.0813 -2.4333 1.1693
11 7 -0.4478 -3.7839 1.3754
12 6 -1.5208 -4.2736 0.5085
13 6 -2.3701 -5.2874 1.2827
14 6 -1.4493 -6.3925 1.8110
15 7 -0.3808 -5.7874 2.6077
16 6 0.0609 -4.5465 2.3546
17 8 0.9583 -4.0951 3.0396
18 6 1.1483 -3.4313 -1.0007
19 6 2.0813 -3.7843 0.1604
20 1 -0.4851 0.8369 -0.0733
21 1 -0.6991 -1.7972 0.7518
22 1 0.4125 -2.0233 2.1234
23 1 -1.0885 -4.7550 -0.3687
24 1 -2.1467 -3.4379 0.1953
25 1 -3.1184 -5.7205 0.6191
26 1 -2.8620 -4.7901 2.1186
27 1 -2.0237 -7.0788 2.4333
28 1 -1.0149 -6.9367 0.9724
29 1 0.0161 -6.2943 3.3333
30 1 0.2292 -4.0084 -1.1013
31 1 1.6077 -3.1116 -1.9360
32 1 3.1542 -3.6966 -0.0117
33 1 1.7762 -4.5935 0.8238
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000404013902.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:30:04
Heat of formation + Delta-G solvation = 6.969618 kcal
Electronic energy + Delta-G solvation = -16277.099203 eV
Core-core repulsion = 13725.029268 eV
Total energy + Delta-G solvation = -2552.069935 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.15800 -36.59165 -35.87251 -33.45079 -32.08239 -30.48585 -26.81343 -25.49072
-24.60346 -22.54103 -20.89602 -19.29534 -18.23556 -16.94820 -16.50940 -16.30513
-15.33527 -14.68998 -14.28869 -13.96961 -13.61866 -13.34327 -12.93926 -12.30646
-11.77807 -11.64461 -11.31333 -11.09044 -11.05535 -10.90895 -10.58008 -10.30346
-9.98971 -9.60604 -9.40532 -8.92625 -8.70632 -8.63898 -7.95790 -7.63476
-6.04598 -4.05527 3.28549 3.37352 3.39723 3.43527 3.85624 4.32904
4.41786 4.87143 4.99680 5.06641 5.24418 5.51790 5.60760 5.67041
5.72674 6.02247 6.16407 6.35943 6.49337 6.64789 6.75489 6.90416
7.03200 7.24130 7.30528 7.39558 7.50883 7.57173 7.82312 7.98144
8.49503 8.58114 8.91165 9.29187 9.53705 10.98703
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.042887 B = 0.008599 C = 0.008377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 652.717981 B = 3255.389922 C = 3341.832968
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.066 3.934
3 Si 0.899 3.101
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.282 1.282
7 C -0.479 4.479
8 H 0.061 0.939
9 C 0.044 3.956
10 C 0.167 3.833
11 N -0.615 5.615
12 C 0.111 3.889
13 C -0.153 4.153
14 C 0.114 3.886
15 N -0.750 5.750
16 C 0.702 3.298
17 O -0.595 6.595
18 C -0.211 4.211
19 C -0.200 4.200
20 H 0.262 0.738
21 H 0.120 0.880
22 H 0.067 0.933
23 H 0.062 0.938
24 H 0.083 0.917
25 H 0.088 0.912
26 H 0.073 0.927
27 H 0.074 0.926
28 H 0.058 0.942
29 H 0.406 0.594
30 H 0.066 0.934
31 H 0.070 0.930
32 H 0.067 0.933
33 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.046 -10.182 0.952 12.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.135 4.135
3 Si 0.727 3.273
4 H -0.197 1.197
5 H -0.211 1.211
6 H -0.207 1.207
7 C -0.517 4.517
8 H 0.080 0.920
9 C 0.043 3.957
10 C 0.046 3.954
11 N -0.351 5.351
12 C -0.012 4.012
13 C -0.192 4.192
14 C -0.011 4.011
15 N -0.409 5.409
16 C 0.403 3.597
17 O -0.473 6.473
18 C -0.248 4.248
19 C -0.238 4.238
20 H 0.072 0.928
21 H 0.138 0.862
22 H 0.086 0.914
23 H 0.080 0.920
24 H 0.101 0.899
25 H 0.107 0.893
26 H 0.092 0.908
27 H 0.092 0.908
28 H 0.076 0.924
29 H 0.242 0.758
30 H 0.084 0.916
31 H 0.089 0.911
32 H 0.085 0.915
33 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -6.810 -9.643 1.216 11.867
hybrid contribution 0.521 0.397 0.014 0.655
sum -6.289 -9.246 1.230 11.249
Atomic orbital electron populations
1.69728 1.05937 1.26722 1.50504 1.24990 0.94961 0.99241 0.94304
0.86412 0.80223 0.83104 0.77586 1.19701 1.21051 1.20744 1.20637
0.93652 0.89024 1.48363 0.92034 1.19390 0.94370 0.88902 0.93062
1.21454 0.97687 0.77264 0.98996 1.47308 1.37717 1.17555 1.32557
1.21601 0.89059 0.97579 0.93010 1.22217 0.98294 0.97327 1.01339
1.21404 0.88871 0.95369 0.95443 1.45028 1.41373 1.15969 1.38549
1.15561 0.81735 0.80703 0.81657 1.90942 1.32635 1.71858 1.51887
1.23096 0.99765 1.07856 0.94111 1.22787 0.96126 1.02465 1.02376
0.92765 0.86206 0.91415 0.91977 0.89883 0.89313 0.90794 0.90794
0.92401 0.75799 0.91573 0.91103 0.91486 0.91317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.34 10.70 55.43 0.59 -23.75 16
2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16
3 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16
4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
7 C -0.48 -13.57 9.05 -34.44 -0.31 -13.88 16
8 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16
9 C 0.04 1.16 2.37 -155.67 -0.37 0.79 16
10 C 0.17 4.12 4.66 -4.04 -0.02 4.10 16
11 N -0.61 -12.56 2.09 -179.77 -0.38 -12.93 16
12 C 0.11 1.75 5.76 -3.98 -0.02 1.73 16
13 C -0.15 -1.77 6.20 -26.48 -0.16 -1.93 16
14 C 0.11 1.28 7.21 -3.98 -0.03 1.25 16
15 N -0.75 -11.47 5.58 -65.53 -0.37 -11.83 16
16 C 0.70 14.53 6.20 -88.07 -0.55 13.99 16
17 O -0.59 -14.96 15.93 5.29 0.08 -14.88 16
18 C -0.21 -4.96 9.63 -26.69 -0.26 -5.21 16
19 C -0.20 -4.90 9.36 -26.69 -0.25 -5.15 16
20 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16
21 H 0.12 3.07 5.70 -51.93 -0.30 2.77 16
22 H 0.07 1.87 7.35 -51.93 -0.38 1.49 16
23 H 0.06 0.98 6.04 -51.93 -0.31 0.66 16
24 H 0.08 1.30 7.86 -51.92 -0.41 0.89 16
25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.41 5.50 8.88 -40.82 -0.36 5.14 16
30 H 0.07 1.41 4.97 -51.93 -0.26 1.15 16
31 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16
32 H 0.07 1.64 8.14 -51.92 -0.42 1.22 16
33 H 0.07 1.67 5.41 -51.93 -0.28 1.39 16
LS Contribution 262.10 15.07 3.95 3.95
Total: -1.00 -31.72 262.10 -7.58 -39.31
By element:
Atomic # 1 Polarization: 10.81 SS G_CDS: -4.38 Total: 6.43 kcal
Atomic # 6 Polarization: -0.53 SS G_CDS: -2.06 Total: -2.59 kcal
Atomic # 7 Polarization: -48.37 SS G_CDS: -0.15 Total: -48.52 kcal
Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -31.72 -7.58 -39.31 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404013902.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.276 kcal
(2) G-P(sol) polarization free energy of solvation -31.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds