Wall clock time and date at job start Mon Mar 30 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99614 * 2 1 4 4 H 1.48505 * 109.46617 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46892 * 299.99507 * 3 2 1 6 6 H 1.48496 * 109.47126 * 59.99983 * 3 2 1 7 7 C 1.37876 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99739 * 171.19532 * 7 2 1 9 9 C 1.50700 * 120.00170 * 351.19335 * 7 2 1 10 10 C 1.52997 * 115.54658 * 324.35051 * 9 7 2 11 11 N 1.46508 * 109.46561 * 186.03619 * 10 9 7 12 12 C 1.46382 * 119.33180 * 268.87763 * 11 10 9 13 13 C 1.53240 * 109.17199 * 209.00823 * 12 11 10 14 14 C 1.53239 * 108.55858 * 304.55093 * 13 12 11 15 15 N 1.46380 * 109.15604 * 55.48349 * 14 13 12 16 16 C 1.34134 * 119.32982 * 88.88122 * 11 10 9 17 17 O 1.21585 * 118.69606 * 359.45020 * 16 11 10 18 18 C 1.52997 * 117.49549 * 110.01715 * 9 7 2 19 19 C 1.52994 * 117.49927 * 178.67918 * 9 7 2 20 20 H 0.97008 * 120.00388 * 5.00695 * 1 2 3 21 21 H 1.08994 * 109.47459 * 66.04121 * 10 9 7 22 22 H 1.08998 * 109.47181 * 306.03204 * 10 9 7 23 23 H 1.09004 * 109.48438 * 89.11041 * 12 11 10 24 24 H 1.09008 * 109.53953 * 328.93168 * 12 11 10 25 25 H 1.08998 * 109.62061 * 184.83060 * 13 12 11 26 26 H 1.08995 * 109.62002 * 64.27659 * 13 12 11 27 27 H 1.09004 * 109.52367 * 175.38592 * 14 13 12 28 28 H 1.09001 * 109.52913 * 295.57485 * 14 13 12 29 29 H 0.96996 * 119.32894 * 150.93300 * 15 14 13 30 30 H 1.08999 * 117.49978 * 214.99803 * 18 9 7 31 31 H 1.09001 * 117.50224 * 0.02950 * 18 9 7 32 32 H 1.09008 * 117.49899 * 359.97438 * 19 9 7 33 33 H 1.08993 * 117.50232 * 144.97470 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0750 -1.1996 -0.1426 9 6 1.2644 -2.4914 0.2009 10 6 0.0813 -2.4333 1.1693 11 7 -0.4478 -3.7839 1.3754 12 6 -1.5208 -4.2736 0.5085 13 6 -2.3701 -5.2874 1.2827 14 6 -1.4493 -6.3925 1.8110 15 7 -0.3808 -5.7874 2.6077 16 6 0.0609 -4.5465 2.3546 17 8 0.9583 -4.0951 3.0396 18 6 1.1483 -3.4313 -1.0007 19 6 2.0813 -3.7843 0.1604 20 1 -0.4851 0.8369 -0.0733 21 1 -0.6991 -1.7972 0.7518 22 1 0.4125 -2.0233 2.1234 23 1 -1.0885 -4.7550 -0.3687 24 1 -2.1467 -3.4379 0.1953 25 1 -3.1184 -5.7205 0.6191 26 1 -2.8620 -4.7901 2.1186 27 1 -2.0237 -7.0788 2.4333 28 1 -1.0149 -6.9367 0.9724 29 1 0.0161 -6.2943 3.3333 30 1 0.2292 -4.0084 -1.1013 31 1 1.6077 -3.1116 -1.9360 32 1 3.1542 -3.6966 -0.0117 33 1 1.7762 -4.5935 0.8238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404013902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:04 Heat of formation + Delta-G solvation = 6.969618 kcal Electronic energy + Delta-G solvation = -16277.099203 eV Core-core repulsion = 13725.029268 eV Total energy + Delta-G solvation = -2552.069935 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.15800 -36.59165 -35.87251 -33.45079 -32.08239 -30.48585 -26.81343 -25.49072 -24.60346 -22.54103 -20.89602 -19.29534 -18.23556 -16.94820 -16.50940 -16.30513 -15.33527 -14.68998 -14.28869 -13.96961 -13.61866 -13.34327 -12.93926 -12.30646 -11.77807 -11.64461 -11.31333 -11.09044 -11.05535 -10.90895 -10.58008 -10.30346 -9.98971 -9.60604 -9.40532 -8.92625 -8.70632 -8.63898 -7.95790 -7.63476 -6.04598 -4.05527 3.28549 3.37352 3.39723 3.43527 3.85624 4.32904 4.41786 4.87143 4.99680 5.06641 5.24418 5.51790 5.60760 5.67041 5.72674 6.02247 6.16407 6.35943 6.49337 6.64789 6.75489 6.90416 7.03200 7.24130 7.30528 7.39558 7.50883 7.57173 7.82312 7.98144 8.49503 8.58114 8.91165 9.29187 9.53705 10.98703 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042887 B = 0.008599 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.717981 B = 3255.389922 C = 3341.832968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.479 4.479 8 H 0.061 0.939 9 C 0.044 3.956 10 C 0.167 3.833 11 N -0.615 5.615 12 C 0.111 3.889 13 C -0.153 4.153 14 C 0.114 3.886 15 N -0.750 5.750 16 C 0.702 3.298 17 O -0.595 6.595 18 C -0.211 4.211 19 C -0.200 4.200 20 H 0.262 0.738 21 H 0.120 0.880 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.406 0.594 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -10.182 0.952 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.043 3.957 10 C 0.046 3.954 11 N -0.351 5.351 12 C -0.012 4.012 13 C -0.192 4.192 14 C -0.011 4.011 15 N -0.409 5.409 16 C 0.403 3.597 17 O -0.473 6.473 18 C -0.248 4.248 19 C -0.238 4.238 20 H 0.072 0.928 21 H 0.138 0.862 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.242 0.758 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.810 -9.643 1.216 11.867 hybrid contribution 0.521 0.397 0.014 0.655 sum -6.289 -9.246 1.230 11.249 Atomic orbital electron populations 1.69728 1.05937 1.26722 1.50504 1.24990 0.94961 0.99241 0.94304 0.86412 0.80223 0.83104 0.77586 1.19701 1.21051 1.20744 1.20637 0.93652 0.89024 1.48363 0.92034 1.19390 0.94370 0.88902 0.93062 1.21454 0.97687 0.77264 0.98996 1.47308 1.37717 1.17555 1.32557 1.21601 0.89059 0.97579 0.93010 1.22217 0.98294 0.97327 1.01339 1.21404 0.88871 0.95369 0.95443 1.45028 1.41373 1.15969 1.38549 1.15561 0.81735 0.80703 0.81657 1.90942 1.32635 1.71858 1.51887 1.23096 0.99765 1.07856 0.94111 1.22787 0.96126 1.02465 1.02376 0.92765 0.86206 0.91415 0.91977 0.89883 0.89313 0.90794 0.90794 0.92401 0.75799 0.91573 0.91103 0.91486 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 10.70 55.43 0.59 -23.75 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.48 -13.57 9.05 -34.44 -0.31 -13.88 16 8 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 9 C 0.04 1.16 2.37 -155.67 -0.37 0.79 16 10 C 0.17 4.12 4.66 -4.04 -0.02 4.10 16 11 N -0.61 -12.56 2.09 -179.77 -0.38 -12.93 16 12 C 0.11 1.75 5.76 -3.98 -0.02 1.73 16 13 C -0.15 -1.77 6.20 -26.48 -0.16 -1.93 16 14 C 0.11 1.28 7.21 -3.98 -0.03 1.25 16 15 N -0.75 -11.47 5.58 -65.53 -0.37 -11.83 16 16 C 0.70 14.53 6.20 -88.07 -0.55 13.99 16 17 O -0.59 -14.96 15.93 5.29 0.08 -14.88 16 18 C -0.21 -4.96 9.63 -26.69 -0.26 -5.21 16 19 C -0.20 -4.90 9.36 -26.69 -0.25 -5.15 16 20 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 21 H 0.12 3.07 5.70 -51.93 -0.30 2.77 16 22 H 0.07 1.87 7.35 -51.93 -0.38 1.49 16 23 H 0.06 0.98 6.04 -51.93 -0.31 0.66 16 24 H 0.08 1.30 7.86 -51.92 -0.41 0.89 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.41 5.50 8.88 -40.82 -0.36 5.14 16 30 H 0.07 1.41 4.97 -51.93 -0.26 1.15 16 31 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.07 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.07 1.67 5.41 -51.93 -0.28 1.39 16 LS Contribution 262.10 15.07 3.95 3.95 Total: -1.00 -31.72 262.10 -7.58 -39.31 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.38 Total: 6.43 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.06 Total: -2.59 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.15 Total: -48.52 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.72 -7.58 -39.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404013902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.276 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds