Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99614 * 2 1 4 4 H 1.48505 * 109.46617 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46892 * 299.99507 * 3 2 1 6 6 H 1.48496 * 109.47126 * 59.99983 * 3 2 1 7 7 C 1.37876 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99739 * 171.19532 * 7 2 1 9 9 C 1.50700 * 120.00170 * 351.19335 * 7 2 1 10 10 C 1.52997 * 115.54658 * 324.35051 * 9 7 2 11 11 N 1.46508 * 109.46561 * 186.03619 * 10 9 7 12 12 C 1.46382 * 119.33180 * 268.87763 * 11 10 9 13 13 C 1.53240 * 109.17199 * 209.00823 * 12 11 10 14 14 C 1.53239 * 108.55858 * 304.55093 * 13 12 11 15 15 N 1.46380 * 109.15604 * 55.48349 * 14 13 12 16 16 C 1.34134 * 119.32982 * 88.88122 * 11 10 9 17 17 O 1.21585 * 118.69606 * 359.45020 * 16 11 10 18 18 C 1.52997 * 117.49549 * 110.01715 * 9 7 2 19 19 C 1.52994 * 117.49927 * 178.67918 * 9 7 2 20 20 H 0.97008 * 120.00388 * 5.00695 * 1 2 3 21 21 H 1.08994 * 109.47459 * 66.04121 * 10 9 7 22 22 H 1.08998 * 109.47181 * 306.03204 * 10 9 7 23 23 H 1.09004 * 109.48438 * 89.11041 * 12 11 10 24 24 H 1.09008 * 109.53953 * 328.93168 * 12 11 10 25 25 H 1.08998 * 109.62061 * 184.83060 * 13 12 11 26 26 H 1.08995 * 109.62002 * 64.27659 * 13 12 11 27 27 H 1.09004 * 109.52367 * 175.38592 * 14 13 12 28 28 H 1.09001 * 109.52913 * 295.57485 * 14 13 12 29 29 H 0.96996 * 119.32894 * 150.93300 * 15 14 13 30 30 H 1.08999 * 117.49978 * 214.99803 * 18 9 7 31 31 H 1.09001 * 117.50224 * 0.02950 * 18 9 7 32 32 H 1.09008 * 117.49899 * 359.97438 * 19 9 7 33 33 H 1.08993 * 117.50232 * 144.97470 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0750 -1.1996 -0.1426 9 6 1.2644 -2.4914 0.2009 10 6 0.0813 -2.4333 1.1693 11 7 -0.4478 -3.7839 1.3754 12 6 -1.5208 -4.2736 0.5085 13 6 -2.3701 -5.2874 1.2827 14 6 -1.4493 -6.3925 1.8110 15 7 -0.3808 -5.7874 2.6077 16 6 0.0609 -4.5465 2.3546 17 8 0.9583 -4.0951 3.0396 18 6 1.1483 -3.4313 -1.0007 19 6 2.0813 -3.7843 0.1604 20 1 -0.4851 0.8369 -0.0733 21 1 -0.6991 -1.7972 0.7518 22 1 0.4125 -2.0233 2.1234 23 1 -1.0885 -4.7550 -0.3687 24 1 -2.1467 -3.4379 0.1953 25 1 -3.1184 -5.7205 0.6191 26 1 -2.8620 -4.7901 2.1186 27 1 -2.0237 -7.0788 2.4333 28 1 -1.0149 -6.9367 0.9724 29 1 0.0161 -6.2943 3.3333 30 1 0.2292 -4.0084 -1.1013 31 1 1.6077 -3.1116 -1.9360 32 1 3.1542 -3.6966 -0.0117 33 1 1.7762 -4.5935 0.8238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404013902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = -14.810885 kcal Electronic energy + Delta-G solvation = -16278.043676 eV Core-core repulsion = 13725.029268 eV Total energy + Delta-G solvation = -2553.014409 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68081 -38.43762 -37.30378 -35.00225 -34.15057 -31.79210 -28.53563 -27.38682 -26.11119 -23.85893 -22.80541 -21.07379 -19.74240 -18.37220 -18.31168 -17.90360 -16.94165 -16.63496 -15.72855 -15.48316 -15.17663 -14.56830 -14.51595 -14.04114 -13.57536 -13.38500 -12.94565 -12.80183 -12.55634 -12.38078 -12.23665 -12.19552 -11.83345 -11.53235 -11.14314 -10.87180 -10.65330 -10.03874 -9.94620 -9.28105 -8.12526 -6.21265 1.39491 1.43710 1.54571 1.95814 2.29672 2.41167 2.98762 3.07330 3.65183 3.87377 4.00968 4.22836 4.37057 4.46831 4.62684 4.65901 4.70367 4.81287 4.86625 4.95766 5.04993 5.16781 5.24926 5.33566 5.48319 5.55904 5.68616 5.89016 5.98395 6.22831 6.41105 6.78385 7.09228 7.39764 7.74697 8.89643 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042887 B = 0.008599 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.717981 B = 3255.389922 C = 3341.832968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.045 0.955 9 C 0.013 3.987 10 C 0.189 3.811 11 N -0.619 5.619 12 C 0.100 3.900 13 C -0.143 4.143 14 C 0.108 3.892 15 N -0.736 5.736 16 C 0.694 3.306 17 O -0.652 6.652 18 C -0.187 4.187 19 C -0.195 4.195 20 H 0.267 0.733 21 H 0.109 0.891 22 H 0.023 0.977 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.132 0.868 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.415 0.585 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 -11.600 0.292 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.011 3.989 10 C 0.066 3.934 11 N -0.354 5.354 12 C -0.022 4.022 13 C -0.181 4.181 14 C -0.016 4.016 15 N -0.395 5.395 16 C 0.395 3.605 17 O -0.535 6.535 18 C -0.225 4.225 19 C -0.233 4.233 20 H 0.077 0.923 21 H 0.127 0.873 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.150 0.850 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.252 0.748 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.488 -11.128 0.533 14.006 hybrid contribution 0.982 0.782 0.219 1.274 sum -7.505 -10.346 0.752 12.804 Atomic orbital electron populations 1.69806 1.06667 1.27678 1.49918 1.25649 0.95915 1.01937 0.93703 0.85487 0.78700 0.79334 0.78015 1.20095 1.19637 1.20342 1.20837 0.93265 0.90985 1.50208 0.93691 1.19531 0.95445 0.88822 0.95070 1.20825 0.96844 0.79563 0.96148 1.47194 1.38717 1.16141 1.33371 1.21910 0.88312 0.98766 0.93174 1.22234 0.98263 0.96145 1.01443 1.21805 0.87926 0.95586 0.96236 1.44961 1.41742 1.13964 1.38788 1.15811 0.81331 0.82118 0.81193 1.90898 1.35251 1.73594 1.53751 1.23068 1.00240 1.06243 0.92933 1.22693 0.95765 1.01789 1.03028 0.92297 0.87336 0.95812 0.91488 0.90132 0.84972 0.91256 0.86533 0.91021 0.74792 0.88964 0.91509 0.92288 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.87 10.70 21.45 0.23 -49.64 16 2 C 0.03 1.57 5.28 84.65 0.45 2.02 16 3 Si 0.96 44.24 29.55 68.60 2.03 46.27 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.52 -30.07 9.05 25.60 0.23 -29.84 16 8 H 0.04 2.68 7.83 -2.91 -0.02 2.65 16 9 C 0.01 0.69 2.37 -52.93 -0.13 0.56 16 10 C 0.19 9.64 4.66 86.38 0.40 10.04 16 11 N -0.62 -25.13 2.09 -841.29 -1.76 -26.89 16 12 C 0.10 2.95 5.76 86.48 0.50 3.45 16 13 C -0.14 -2.71 6.20 30.75 0.19 -2.51 16 14 C 0.11 1.92 7.21 86.48 0.62 2.55 16 15 N -0.74 -20.91 5.58 -479.86 -2.68 -23.59 16 16 C 0.69 28.62 6.20 179.46 1.11 29.73 16 17 O -0.65 -33.84 15.93 -3.99 -0.06 -33.90 16 18 C -0.19 -8.73 9.63 30.62 0.29 -8.43 16 19 C -0.20 -9.68 9.36 30.62 0.29 -9.40 16 20 H 0.27 13.84 8.32 -92.70 -0.77 13.07 16 21 H 0.11 5.72 5.70 -2.39 -0.01 5.70 16 22 H 0.02 1.38 7.35 -2.39 -0.02 1.36 16 23 H 0.07 1.90 6.04 -2.38 -0.01 1.89 16 24 H 0.08 2.40 7.86 -2.38 -0.02 2.38 16 25 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.41 10.41 8.88 -92.71 -0.82 9.59 16 30 H 0.09 3.76 4.97 -2.39 -0.01 3.75 16 31 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.07 3.46 5.41 -2.39 -0.01 3.45 16 Total: -1.00 -71.62 262.10 2.02 -69.60 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.30 Total: 20.00 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 3.96 Total: -1.84 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.21 Total: -100.12 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.06 Total: -33.90 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.62 2.02 -69.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404013902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.792 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds