Wall clock time and date at job start Mon Mar 30 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86808 * 120.00021 * 2 1 4 4 H 1.48501 * 109.46776 * 239.99849 * 3 2 1 5 5 H 1.48502 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47298 * 119.99840 * 3 2 1 7 7 C 1.40052 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.46369 * 119.99904 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00242 * 5.01123 * 9 7 2 11 11 N 1.34783 * 120.00133 * 185.01646 * 9 7 2 12 12 C 1.46881 * 120.49845 * 174.76670 * 11 9 7 13 13 C 1.53326 * 108.76425 * 124.36388 * 12 11 9 14 14 C 1.52672 * 109.16858 * 52.40940 * 13 12 11 15 15 C 1.53486 * 113.61124 * 74.06417 * 14 13 12 16 16 N 1.48050 * 86.05276 * 90.86221 * 15 14 13 17 17 C 1.48039 * 90.83029 * 24.37590 * 16 15 14 18 18 C 1.52680 * 113.18721 * 302.55403 * 14 13 12 19 19 C 1.46888 * 120.49531 * 354.73906 * 11 9 7 20 20 H 0.97004 * 119.99755 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.58452 * 244.14978 * 12 11 9 22 22 H 1.08998 * 109.59092 * 4.57396 * 12 11 9 23 23 H 1.09002 * 109.52197 * 172.31572 * 13 12 11 24 24 H 1.08992 * 109.52280 * 292.49706 * 13 12 11 25 25 H 1.08995 * 113.77604 * 205.14753 * 15 14 13 26 26 H 1.08998 * 113.77908 * 336.57490 * 15 14 13 27 27 H 1.00902 * 110.99193 * 137.29655 * 16 15 14 28 28 H 1.09004 * 113.78190 * 221.34274 * 17 16 15 29 29 H 1.09001 * 113.88762 * 89.92908 * 17 16 15 30 30 H 1.08998 * 109.51734 * 297.54289 * 18 14 13 31 31 H 1.08996 * 109.57247 * 177.38330 * 18 14 13 32 32 H 1.09003 * 109.59386 * 355.42359 * 19 11 9 33 33 H 1.09000 * 109.58882 * 115.70734 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0618 -2.4826 -0.0920 11 7 1.9452 -3.6455 0.1031 12 6 1.2176 -4.9161 0.2195 13 6 1.6815 -5.8544 -0.9009 14 6 3.2051 -5.9483 -0.8774 15 6 3.7511 -6.7949 0.2806 16 7 3.6745 -7.9396 -0.6552 17 6 3.7681 -7.0250 -1.8155 18 6 3.8932 -4.5930 -1.0216 19 6 3.4139 -3.6635 0.0996 20 1 -0.4850 0.8401 -0.0004 21 1 1.4284 -5.3705 1.1876 22 1 0.1471 -4.7343 0.1242 23 1 1.2531 -6.8449 -0.7472 24 1 1.3555 -5.4612 -1.8637 25 1 4.7680 -6.5344 0.5740 26 1 3.0693 -6.8731 1.1274 27 1 4.4970 -8.5198 -0.5848 28 1 3.0998 -7.2862 -2.6361 29 1 4.7894 -6.8317 -2.1439 30 1 3.6410 -4.1576 -1.9885 31 1 4.9731 -4.7225 -0.9508 32 1 3.7915 -2.6559 -0.0747 33 1 3.7772 -4.0286 1.0603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616570674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:43 Heat of formation + Delta-G solvation = -5.475101 kcal Electronic energy + Delta-G solvation = -15942.752585 eV Core-core repulsion = 13390.143006 eV Total energy + Delta-G solvation = -2552.609579 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29117 -37.49592 -34.67384 -32.52181 -30.76633 -30.40711 -26.51007 -25.99645 -24.72790 -22.73123 -21.71395 -19.52476 -17.85365 -16.77601 -15.88387 -15.53660 -14.98599 -14.40861 -14.20205 -13.97719 -13.82802 -13.00852 -12.59947 -12.34906 -12.09490 -11.71006 -11.64780 -11.30957 -11.11968 -10.92078 -10.67550 -10.60750 -10.22690 -10.11788 -9.86782 -9.72157 -8.85781 -8.83247 -7.55399 -7.16263 -6.18484 -4.63562 3.15099 3.20216 3.21731 4.09334 4.15443 4.50050 4.60608 4.65772 4.86324 5.32254 5.35419 5.40127 5.66956 5.69253 5.74695 5.80904 5.90430 5.92432 6.06412 6.12727 6.30518 6.34275 6.43209 6.53922 6.58330 6.67506 6.82316 7.25937 7.46280 7.67682 8.15995 8.38446 9.02975 9.46971 10.59453 10.78226 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051371 B = 0.007376 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.927418 B = 3795.414198 C = 4124.313209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.641 5.641 12 C 0.122 3.878 13 C -0.102 4.102 14 C -0.075 4.075 15 C 0.012 3.988 16 N -0.634 5.634 17 C 0.008 3.992 18 C -0.123 4.123 19 C 0.125 3.875 20 H 0.269 0.731 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.311 0.689 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -9.422 -1.161 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.462 6.462 11 N -0.379 5.379 12 C -0.003 4.003 13 C -0.140 4.140 14 C -0.076 4.076 15 C -0.118 4.118 16 N -0.258 5.258 17 C -0.122 4.122 18 C -0.162 4.162 19 C 0.000 4.000 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.036 -9.606 -1.176 12.580 hybrid contribution 1.652 1.026 -0.060 1.946 sum 9.688 -8.581 -1.236 13.001 Atomic orbital electron populations 1.70008 1.07061 1.27361 1.35293 1.25727 0.94596 1.00250 0.92609 0.86471 0.79875 0.81211 0.79422 1.19284 1.20543 1.19275 1.20954 0.93504 0.89346 1.54445 0.90996 1.18237 0.86905 0.82290 0.76056 1.90586 1.14435 1.86177 1.54954 1.48120 1.04554 1.05884 1.79343 1.21116 0.98603 0.84983 0.95556 1.21604 0.92241 0.99773 1.00427 1.21922 0.97048 0.93746 0.94867 1.23751 1.00189 0.90837 0.96998 1.66912 1.41808 1.13164 1.03907 1.23797 1.00047 0.93040 0.95364 1.21948 0.98273 0.94980 1.01041 1.21355 0.82763 1.00202 0.95631 0.92055 0.94128 0.89741 0.91159 0.91791 0.91882 0.89491 0.87726 0.89766 0.91933 0.91384 0.92173 0.88948 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.09 11.84 55.55 0.66 -22.44 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.00 29.56 -169.99 -5.02 14.98 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.28 8.86 -35.63 -0.32 -15.60 16 8 H 0.07 1.82 5.66 -52.49 -0.30 1.52 16 9 C 0.56 16.02 7.61 -12.99 -0.10 15.92 16 10 O -0.58 -18.89 14.44 5.20 0.08 -18.82 16 11 N -0.64 -14.64 2.94 -174.33 -0.51 -15.16 16 12 C 0.12 2.44 6.31 -3.67 -0.02 2.42 16 13 C -0.10 -1.70 5.21 -26.73 -0.14 -1.84 16 14 C -0.08 -1.08 0.77 -154.40 -0.12 -1.20 16 15 C 0.01 0.16 7.72 -2.95 -0.02 0.13 16 16 N -0.63 -7.69 8.36 -118.64 -0.99 -8.68 16 17 C 0.01 0.09 8.03 -2.94 -0.02 0.07 16 18 C -0.12 -1.87 5.25 -26.73 -0.14 -2.01 16 19 C 0.13 2.31 6.20 -3.66 -0.02 2.29 16 20 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 21 H 0.04 0.75 7.52 -51.93 -0.39 0.36 16 22 H 0.08 1.92 6.97 -51.93 -0.36 1.56 16 23 H 0.07 1.10 8.01 -51.93 -0.42 0.68 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.09 1.18 7.43 -51.93 -0.39 0.79 16 27 H 0.31 3.10 8.92 -39.29 -0.35 2.75 16 28 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 29 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.09 1.80 5.32 -51.93 -0.28 1.52 16 33 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -33.20 264.78 -7.37 -40.57 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.56 Total: 3.02 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.00 Total: 2.53 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.85 Total: -46.27 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.20 -7.37 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616570674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.095 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds