Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46909 * 90.00074 * 3 2 1 5 5 H 1.48496 * 109.47072 * 210.00085 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99908 * 3 2 1 7 7 C 1.40050 * 120.00155 * 180.27379 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 180.02562 * 9 7 2 12 12 C 1.47178 * 135.99263 * 359.62704 * 11 9 7 13 13 C 1.53153 * 87.72792 * 153.44369 * 12 11 9 14 14 C 1.47174 * 135.99070 * 179.97438 * 11 9 7 15 15 C 1.52599 * 114.07994 * 139.64862 * 13 12 11 16 16 C 1.53253 * 109.01377 * 186.49237 * 15 13 12 17 17 N 1.46838 * 109.42168 * 303.38659 * 16 15 13 18 18 C 1.46838 * 111.47358 * 63.61437 * 17 16 15 19 19 C 1.52592 * 114.43706 * 272.07703 * 13 12 11 20 20 H 0.97005 * 120.00029 * 359.72378 * 1 2 3 21 21 H 1.09003 * 113.49171 * 268.13458 * 12 11 9 22 22 H 1.09001 * 113.49512 * 38.64144 * 12 11 9 23 23 H 1.08997 * 113.49105 * 321.34233 * 14 11 9 24 24 H 1.08994 * 113.48985 * 91.86619 * 14 11 9 25 25 H 1.09002 * 109.54353 * 306.35021 * 15 13 12 26 26 H 1.08996 * 109.54645 * 66.63206 * 15 13 12 27 27 H 1.09000 * 109.47822 * 183.39943 * 16 15 13 28 28 H 1.08996 * 109.48447 * 63.37392 * 16 15 13 29 29 H 1.00899 * 110.99640 * 299.32157 * 17 16 15 30 30 H 1.08997 * 109.47722 * 176.40216 * 18 17 16 31 31 H 1.09002 * 109.48231 * 56.37602 * 18 17 16 32 32 H 1.08994 * 109.54801 * 293.54652 * 19 13 12 33 33 H 1.09003 * 109.53871 * 53.72809 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 1.4001 5 1 3.5382 1.4403 -0.7000 6 1 1.4381 2.6527 -0.7000 7 6 2.0070 -1.2128 -0.0058 8 1 3.0870 -1.2129 -0.0062 9 6 1.2752 -2.4805 -0.0124 10 8 0.0583 -2.4805 -0.0124 11 7 1.9491 -3.6477 -0.0175 12 6 3.3639 -4.0531 -0.0250 13 6 2.9318 -5.3533 0.6593 14 6 1.5929 -5.0756 -0.0241 15 6 3.6506 -6.5969 0.1440 16 6 3.0210 -7.8388 0.7842 17 7 3.0839 -7.7195 2.2464 18 6 2.2891 -6.5824 2.7275 19 6 2.8828 -5.2789 2.1827 20 1 -0.4850 0.8401 0.0041 21 1 3.7678 -4.2026 -1.0263 22 1 3.9998 -3.4232 0.5971 23 1 0.7301 -5.3110 0.5989 24 1 1.5197 -5.5005 -1.0252 25 1 3.5490 -6.6539 -0.9398 26 1 4.7062 -6.5446 0.4105 27 1 3.5676 -8.7273 0.4681 28 1 1.9804 -7.9215 0.4707 29 1 4.0396 -7.6523 2.5629 30 1 2.3064 -6.5621 3.8172 31 1 1.2605 -6.6857 2.3821 32 1 3.8914 -5.1459 2.5739 33 1 2.2598 -4.4377 2.4867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616571040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = -6.422812 kcal Electronic energy + Delta-G solvation = -15786.289498 eV Core-core repulsion = 13233.638823 eV Total energy + Delta-G solvation = -2552.650675 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30362 -37.03194 -35.43319 -32.50158 -30.91126 -30.24469 -27.07838 -25.53960 -24.79965 -22.93670 -21.96029 -19.46265 -18.21226 -16.71321 -15.75617 -15.28222 -15.00531 -14.50180 -14.44467 -14.06602 -14.00580 -13.27231 -12.61047 -12.21733 -12.13416 -11.77889 -11.56118 -11.49712 -11.14133 -11.07890 -10.98109 -10.65701 -10.49226 -10.22933 -10.17379 -9.71599 -8.89021 -8.30893 -7.66750 -7.26824 -6.23034 -4.67793 3.11440 3.17910 3.21726 4.02598 4.34643 4.38969 4.51318 4.58721 4.96419 5.11710 5.23994 5.35526 5.46342 5.52652 5.69157 5.87371 5.91346 5.99222 6.02246 6.06703 6.08828 6.20044 6.26143 6.35021 6.41810 6.73783 6.75157 7.07358 7.40230 7.40458 8.07490 8.45445 8.98352 9.59411 10.54350 10.73767 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050894 B = 0.006795 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.034469 B = 4119.590497 C = 4218.585878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.583 3.417 10 O -0.575 6.575 11 N -0.660 5.660 12 C 0.120 3.880 13 C -0.102 4.102 14 C 0.115 3.885 15 C -0.138 4.138 16 C 0.059 3.941 17 N -0.688 5.688 18 C 0.059 3.941 19 C -0.125 4.125 20 H 0.269 0.731 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.337 0.663 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 -10.963 2.408 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.391 3.609 10 O -0.457 6.457 11 N -0.401 5.401 12 C -0.005 4.005 13 C -0.103 4.103 14 C -0.010 4.010 15 C -0.178 4.178 16 C -0.071 4.071 17 N -0.316 5.316 18 C -0.071 4.071 19 C -0.164 4.164 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.154 0.846 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.503 -11.072 2.515 13.609 hybrid contribution 1.123 1.669 -0.467 2.064 sum 8.626 -9.404 2.048 12.924 Atomic orbital electron populations 1.70023 1.07080 1.27412 1.35254 1.25733 0.94659 1.00322 0.92620 0.86333 0.80122 0.81207 0.78895 1.19649 1.18895 1.20330 1.20796 0.93533 0.88793 1.54174 0.91480 1.17983 0.86413 0.80562 0.75970 1.90619 1.13832 1.85497 1.55770 1.49960 1.06091 1.03914 1.80126 1.22580 0.87395 0.92247 0.98277 1.21932 0.97941 0.94802 0.95637 1.22522 0.95805 0.84580 0.98066 1.22093 0.99490 0.95229 1.00967 1.22022 1.01477 0.96346 0.87235 1.60603 1.16607 1.43571 1.10838 1.22035 0.98004 0.87646 0.99401 1.21837 1.01529 0.99767 0.93258 0.91987 0.92159 0.91802 0.92231 0.92402 0.91196 0.91849 0.91058 0.90889 0.84600 0.90859 0.90825 0.92001 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.46 11.83 55.55 0.66 -22.81 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 3 Si 0.91 20.41 29.56 -169.99 -5.02 15.38 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.61 9.38 -35.63 -0.33 -15.94 16 8 H 0.07 1.81 7.75 -52.49 -0.41 1.41 16 9 C 0.58 17.36 8.00 -12.99 -0.10 17.25 16 10 O -0.57 -19.47 15.79 5.20 0.08 -19.38 16 11 N -0.66 -15.64 3.48 -186.67 -0.65 -16.29 16 12 C 0.12 2.19 7.50 -8.03 -0.06 2.13 16 13 C -0.10 -1.55 0.86 -154.91 -0.13 -1.68 16 14 C 0.11 2.19 7.66 -8.18 -0.06 2.13 16 15 C -0.14 -1.60 5.31 -26.81 -0.14 -1.74 16 16 C 0.06 0.64 6.53 -3.73 -0.02 0.61 16 17 N -0.69 -7.73 6.83 -113.59 -0.78 -8.51 16 18 C 0.06 0.74 6.53 -3.73 -0.02 0.72 16 19 C -0.12 -1.81 5.28 -26.81 -0.14 -1.95 16 20 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 21 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 22 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 23 H 0.06 1.19 7.78 -51.93 -0.40 0.79 16 24 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 25 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.34 3.30 8.83 -39.29 -0.35 2.96 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.02 7.81 -51.93 -0.41 0.62 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.40 7.95 -51.93 -0.41 0.98 16 LS Contribution 272.73 15.07 4.11 4.11 Total: -1.00 -34.65 272.73 -7.62 -42.27 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.90 Total: 1.34 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.12 Total: 3.88 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.77 Total: -47.60 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.08 Total: -19.38 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.65 -7.62 -42.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616571040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.847 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds