Wall clock time and date at job start Mon Mar 30 2020 03:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46909 * 90.00074 * 3 2 1 5 5 H 1.48496 * 109.47072 * 210.00085 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99908 * 3 2 1 7 7 C 1.40050 * 120.00155 * 180.27379 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 180.02562 * 9 7 2 12 12 C 1.47178 * 135.99263 * 359.62704 * 11 9 7 13 13 C 1.53153 * 87.72792 * 153.44369 * 12 11 9 14 14 C 1.47174 * 135.99070 * 179.97438 * 11 9 7 15 15 C 1.52599 * 114.07994 * 139.64862 * 13 12 11 16 16 C 1.53253 * 109.01377 * 186.49237 * 15 13 12 17 17 N 1.46838 * 109.42168 * 303.38659 * 16 15 13 18 18 C 1.46838 * 111.47358 * 63.61437 * 17 16 15 19 19 C 1.52592 * 114.43706 * 272.07703 * 13 12 11 20 20 H 0.97005 * 120.00029 * 359.72378 * 1 2 3 21 21 H 1.09003 * 113.49171 * 268.13458 * 12 11 9 22 22 H 1.09001 * 113.49512 * 38.64144 * 12 11 9 23 23 H 1.08997 * 113.49105 * 321.34233 * 14 11 9 24 24 H 1.08994 * 113.48985 * 91.86619 * 14 11 9 25 25 H 1.09002 * 109.54353 * 306.35021 * 15 13 12 26 26 H 1.08996 * 109.54645 * 66.63206 * 15 13 12 27 27 H 1.09000 * 109.47822 * 183.39943 * 16 15 13 28 28 H 1.08996 * 109.48447 * 63.37392 * 16 15 13 29 29 H 1.00899 * 110.99640 * 299.32157 * 17 16 15 30 30 H 1.08997 * 109.47722 * 176.40216 * 18 17 16 31 31 H 1.09002 * 109.48231 * 56.37602 * 18 17 16 32 32 H 1.08994 * 109.54801 * 293.54652 * 19 13 12 33 33 H 1.09003 * 109.53871 * 53.72809 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 1.4001 5 1 3.5382 1.4403 -0.7000 6 1 1.4381 2.6527 -0.7000 7 6 2.0070 -1.2128 -0.0058 8 1 3.0870 -1.2129 -0.0062 9 6 1.2752 -2.4805 -0.0124 10 8 0.0583 -2.4805 -0.0124 11 7 1.9491 -3.6477 -0.0175 12 6 3.3639 -4.0531 -0.0250 13 6 2.9318 -5.3533 0.6593 14 6 1.5929 -5.0756 -0.0241 15 6 3.6506 -6.5969 0.1440 16 6 3.0210 -7.8388 0.7842 17 7 3.0839 -7.7195 2.2464 18 6 2.2891 -6.5824 2.7275 19 6 2.8828 -5.2789 2.1827 20 1 -0.4850 0.8401 0.0041 21 1 3.7678 -4.2026 -1.0263 22 1 3.9998 -3.4232 0.5971 23 1 0.7301 -5.3110 0.5989 24 1 1.5197 -5.5005 -1.0252 25 1 3.5490 -6.6539 -0.9398 26 1 4.7062 -6.5446 0.4105 27 1 3.5676 -8.7273 0.4681 28 1 1.9804 -7.9215 0.4707 29 1 4.0396 -7.6523 2.5629 30 1 2.3064 -6.5621 3.8172 31 1 1.2605 -6.6857 2.3821 32 1 3.8914 -5.1459 2.5739 33 1 2.2598 -4.4377 2.4867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616571040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:45 Heat of formation + Delta-G solvation = -33.444557 kcal Electronic energy + Delta-G solvation = -15787.461248 eV Core-core repulsion = 13233.638823 eV Total energy + Delta-G solvation = -2553.822425 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.73188 -38.75767 -37.13823 -34.70596 -31.99649 -31.67542 -29.04103 -27.04809 -26.60593 -23.97005 -23.13546 -21.28910 -19.56915 -18.66205 -17.71180 -16.70769 -16.47046 -16.04317 -15.75404 -15.50173 -15.24110 -14.76693 -14.29235 -13.95261 -13.37312 -13.22595 -13.13045 -12.97957 -12.82316 -12.75448 -12.52437 -12.12353 -12.05160 -11.86721 -11.30516 -11.14716 -11.00291 -9.95990 -9.28167 -9.18002 -8.36695 -6.93689 1.34539 1.36916 1.52636 2.17179 2.36765 2.65406 3.23077 3.45669 3.46416 3.83062 4.02388 4.10324 4.22856 4.40870 4.49049 4.54261 4.58110 4.67841 4.77976 4.86647 4.91611 5.03746 5.09426 5.10370 5.15311 5.23566 5.32555 5.43922 5.89893 6.11063 6.38791 6.60886 6.78490 7.56019 8.37251 8.59831 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050894 B = 0.006795 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.034469 B = 4119.590497 C = 4218.585878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.259 1.259 5 H -0.249 1.249 6 H -0.269 1.269 7 C -0.564 4.564 8 H 0.082 0.918 9 C 0.563 3.437 10 O -0.636 6.636 11 N -0.680 5.680 12 C 0.116 3.884 13 C -0.074 4.074 14 C 0.106 3.894 15 C -0.128 4.128 16 C 0.060 3.940 17 N -0.685 5.685 18 C 0.067 3.933 19 C -0.123 4.123 20 H 0.277 0.723 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.351 0.649 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.138 -11.692 2.442 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.183 1.183 5 H -0.172 1.172 6 H -0.194 1.194 7 C -0.601 4.601 8 H 0.100 0.900 9 C 0.371 3.629 10 O -0.524 6.524 11 N -0.418 5.418 12 C -0.007 4.007 13 C -0.075 4.075 14 C -0.018 4.018 15 C -0.168 4.168 16 C -0.070 4.070 17 N -0.314 5.314 18 C -0.063 4.063 19 C -0.162 4.162 20 H 0.087 0.913 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.170 0.830 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.675 -11.875 2.551 16.171 hybrid contribution 0.158 1.780 -0.478 1.850 sum 10.833 -10.095 2.073 14.952 Atomic orbital electron populations 1.70197 1.09661 1.29188 1.36264 1.27070 0.95598 1.05087 0.91070 0.84962 0.78699 0.74623 0.79654 1.18298 1.17184 1.19369 1.21288 0.94389 0.89595 1.54797 0.89971 1.18346 0.86057 0.82743 0.75799 1.90548 1.16275 1.87130 1.58482 1.49788 1.09149 1.04341 1.78548 1.22930 0.84441 0.93434 0.99942 1.21797 0.94742 0.95345 0.95577 1.22833 0.97640 0.82120 0.99165 1.22082 1.00208 0.92976 1.01500 1.22078 1.01165 0.96976 0.86748 1.60575 1.17403 1.42178 1.11229 1.21910 0.97141 0.87104 1.00129 1.21851 1.02067 0.99311 0.93018 0.91345 0.90029 0.91787 0.94323 0.90935 0.90241 0.89346 0.88258 0.92210 0.83042 0.89545 0.92781 0.89698 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.16 11.83 21.84 0.26 -51.91 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 41.91 29.56 68.60 2.03 43.94 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -33.66 9.38 24.83 0.23 -33.42 16 8 H 0.08 4.46 7.75 -2.91 -0.02 4.43 16 9 C 0.56 35.07 8.00 86.36 0.69 35.76 16 10 O -0.64 -45.78 15.79 -4.33 -0.07 -45.85 16 11 N -0.68 -33.13 3.48 -862.72 -3.00 -36.12 16 12 C 0.12 4.09 7.50 83.43 0.63 4.72 16 13 C -0.07 -2.12 0.86 -52.44 -0.05 -2.17 16 14 C 0.11 4.11 7.66 83.33 0.64 4.75 16 15 C -0.13 -2.48 5.31 30.55 0.16 -2.32 16 16 C 0.06 1.09 6.53 86.40 0.56 1.65 16 17 N -0.68 -13.22 6.83 -513.29 -3.51 -16.73 16 18 C 0.07 1.61 6.53 86.40 0.56 2.17 16 19 C -0.12 -3.47 5.28 30.54 0.16 -3.31 16 20 H 0.28 15.73 8.29 -92.70 -0.77 14.96 16 21 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 22 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 23 H 0.04 1.63 7.78 -2.39 -0.02 1.62 16 24 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16 25 H 0.08 1.46 8.02 -2.39 -0.02 1.45 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.35 5.39 8.83 -89.69 -0.79 4.60 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.51 7.81 -2.39 -0.02 1.49 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 1.29 7.95 -2.39 -0.02 1.27 16 Total: -1.00 -80.50 272.73 0.08 -80.41 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.31 Total: 16.42 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 4.06 Total: 9.84 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -6.25 Total: -104.76 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.07 Total: -45.85 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -80.50 0.08 -80.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616571040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.970 kcal (2) G-P(sol) polarization free energy of solvation -80.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds