Wall clock time and date at job start Mon Mar 30 2020 03:21:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99651 * 2 1
4 4 H 1.48497 * 109.46953 * 239.99924 * 3 2 1
5 5 H 1.48495 * 109.47064 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46921 * 119.99968 * 3 2 1
7 7 C 1.37871 * 120.00037 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00191 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00432 * 359.97438 * 7 2 1
10 10 N 1.46895 * 109.47601 * 185.17741 * 9 7 2
11 11 C 1.47989 * 111.00122 * 175.97826 * 10 9 7
12 12 C 1.55198 * 105.07110 * 213.90007 * 11 10 9
13 13 C 1.53839 * 101.35495 * 35.47731 * 12 11 10
14 14 C 1.52913 * 111.97219 * 203.80861 * 13 12 11
15 15 N 1.47148 * 105.12129 * 215.63045 * 14 13 12
16 16 C 1.34604 * 111.30662 * 15.59652 * 15 14 13
17 17 O 1.21288 * 124.94171 * 179.64447 * 16 15 14
18 18 C 1.51641 * 110.11869 * 359.65749 * 16 15 14
19 19 C 1.47844 * 110.99538 * 55.20527 * 10 9 7
20 20 H 0.97000 * 119.99995 * 359.97438 * 1 2 3
21 21 H 1.09005 * 109.46606 * 65.17816 * 9 7 2
22 22 H 1.09001 * 109.47054 * 305.18268 * 9 7 2
23 23 H 1.09006 * 110.33687 * 332.82204 * 11 10 9
24 24 H 1.08993 * 110.34096 * 94.96558 * 11 10 9
25 25 H 1.09004 * 111.02424 * 153.58569 * 12 11 10
26 26 H 1.09001 * 111.01650 * 277.48372 * 12 11 10
27 27 H 1.08992 * 110.31549 * 334.54658 * 14 13 12
28 28 H 1.09006 * 110.31038 * 96.72593 * 14 13 12
29 29 H 0.97002 * 124.34402 * 195.58383 * 15 14 13
30 30 H 1.08996 * 110.55818 * 226.46453 * 18 16 15
31 31 H 1.09001 * 110.67731 * 103.69264 * 18 16 15
32 32 H 1.09004 * 109.99326 * 243.65996 * 19 10 9
33 33 H 1.09000 * 110.00397 * 4.99658 * 19 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 7 2.2009 -3.6129 0.1238
11 6 1.4903 -4.9072 0.2240
12 6 2.3669 -5.7771 1.1639
13 6 2.8897 -4.7215 2.1534
14 6 4.1961 -5.1575 2.8177
15 7 4.1195 -4.6384 4.1925
16 6 2.8616 -4.2807 4.5109
17 8 2.5181 -3.8284 5.5826
18 6 1.9362 -4.5258 3.3348
19 6 3.0529 -3.4513 1.3212
20 1 -0.4850 0.8400 0.0004
21 1 0.6955 -2.5979 -0.9331
22 1 0.5570 -2.5180 0.8397
23 1 0.4997 -4.7631 0.6556
24 1 1.4107 -5.3727 -0.7583
25 1 1.7655 -6.5299 1.6737
26 1 3.1875 -6.2399 0.6157
27 1 4.2713 -6.2448 2.8274
28 1 5.0491 -4.7231 2.2963
29 1 4.8782 -4.5639 4.7924
30 1 1.2924 -3.6622 3.1680
31 1 1.3378 -5.4225 3.4962
32 1 4.0948 -3.3318 1.0238
33 1 2.7274 -2.5844 1.8963
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000619057264.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:10
Heat of formation + Delta-G solvation = -33.409303 kcal
Electronic energy + Delta-G solvation = -15859.818233 eV
Core-core repulsion = 13305.997336 eV
Total energy + Delta-G solvation = -2553.820897 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.68498 -38.04540 -35.60697 -33.07132 -31.38805 -29.33673 -27.99847 -26.56447
-24.74127 -22.20474 -20.56190 -20.25131 -19.32991 -17.16932 -16.13030 -15.70382
-15.16398 -15.00668 -14.71206 -14.12489 -13.55626 -13.31724 -13.10873 -12.68541
-12.27350 -12.06080 -11.80647 -11.59453 -11.01211 -10.86014 -10.71023 -10.63655
-10.58451 -10.24833 -9.89725 -9.63671 -9.17948 -9.02798 -8.48222 -7.27922
-6.05639 -4.07517 2.74531 3.32558 3.36865 3.39251 3.44855 4.40010
4.41804 4.53379 4.67064 4.88167 5.23874 5.27630 5.31454 5.50080
5.52107 5.69680 5.77617 5.91228 6.01189 6.12626 6.28648 6.41338
6.54912 6.65360 6.86667 7.05951 7.18341 7.34990 7.75919 7.97823
8.15492 8.36372 8.48698 9.00241 9.57322 11.05246
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.027635 B = 0.008574 C = 0.007469
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1012.968779 B = 3264.783973 C = 3748.063963
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.058 3.942
3 Si 0.896 3.104
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.515 4.515
8 H 0.062 0.938
9 C 0.187 3.813
10 N -0.528 5.528
11 C 0.040 3.960
12 C -0.111 4.111
13 C -0.098 4.098
14 C 0.119 3.881
15 N -0.735 5.735
16 C 0.523 3.477
17 O -0.541 6.541
18 C -0.143 4.143
19 C 0.069 3.931
20 H 0.262 0.738
21 H 0.028 0.972
22 H -0.004 1.004
23 H 0.040 0.960
24 H 0.070 0.930
25 H 0.070 0.930
26 H 0.077 0.923
27 H 0.071 0.929
28 H 0.083 0.917
29 H 0.406 0.594
30 H 0.107 0.893
31 H 0.102 0.898
32 H 0.067 0.933
33 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.793 -12.130 3.619 14.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.144 4.144
3 Si 0.724 3.276
4 H -0.201 1.201
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.553 4.553
8 H 0.080 0.920
9 C 0.062 3.938
10 N -0.253 5.253
11 C -0.088 4.088
12 C -0.149 4.149
13 C -0.100 4.100
14 C -0.006 4.006
15 N -0.390 5.390
16 C 0.310 3.690
17 O -0.418 6.418
18 C -0.183 4.183
19 C -0.059 4.059
20 H 0.072 0.928
21 H 0.046 0.954
22 H 0.014 0.986
23 H 0.059 0.941
24 H 0.089 0.911
25 H 0.089 0.911
26 H 0.096 0.904
27 H 0.089 0.911
28 H 0.101 0.899
29 H 0.244 0.756
30 H 0.126 0.874
31 H 0.120 0.880
32 H 0.085 0.915
33 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 6.638 -11.748 3.636 13.975
hybrid contribution 0.228 1.007 0.859 1.343
sum 6.866 -10.742 4.495 13.518
Atomic orbital electron populations
1.69942 1.06052 1.26976 1.50535 1.24982 0.94861 0.99326 0.95260
0.86584 0.79516 0.82829 0.78663 1.20117 1.21290 1.20255 1.21124
0.93411 0.90083 1.50701 0.91991 1.19911 0.90223 0.87439 0.96277
1.63864 1.22706 1.02260 1.36429 1.23070 0.95907 0.91280 0.98554
1.22590 0.99704 0.96250 0.96359 1.21851 0.93989 0.98929 0.95222
1.21979 0.98647 0.98650 0.81327 1.46354 1.10302 1.65918 1.16469
1.21102 0.83821 0.75609 0.88446 1.90730 1.79265 1.45297 1.26467
1.22319 0.98061 1.05228 0.92693 1.22568 0.98777 0.94290 0.90231
0.92791 0.95357 0.98624 0.94134 0.91121 0.91134 0.90439 0.91068
0.89873 0.75589 0.87422 0.88028 0.91492 0.91068
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16
4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
7 C -0.51 -14.23 8.01 -34.44 -0.28 -14.50 16
8 H 0.06 1.69 7.36 -52.48 -0.39 1.30 16
9 C 0.19 4.76 4.58 -4.98 -0.02 4.73 16
10 N -0.53 -10.79 5.28 -233.05 -1.23 -12.02 16
11 C 0.04 0.65 6.69 -2.06 -0.01 0.64 16
12 C -0.11 -1.36 5.98 -25.13 -0.15 -1.51 16
13 C -0.10 -1.35 0.72 -154.21 -0.11 -1.46 16
14 C 0.12 1.27 6.99 -3.73 -0.03 1.25 16
15 N -0.73 -9.02 6.26 -59.59 -0.37 -9.39 16
16 C 0.52 8.39 8.46 -10.60 -0.09 8.30 16
17 O -0.54 -10.82 18.03 5.55 0.10 -10.72 16
18 C -0.14 -2.11 5.92 -27.38 -0.16 -2.27 16
19 C 0.07 1.26 5.17 -3.44 -0.02 1.24 16
20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
22 H 0.00 -0.11 7.99 -51.93 -0.42 -0.53 16
23 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16
24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
25 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16
26 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16
27 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16
28 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16
29 H 0.41 4.17 8.96 -40.82 -0.37 3.80 16
30 H 0.11 1.88 7.68 -51.93 -0.40 1.48 16
31 H 0.10 1.28 7.61 -51.93 -0.40 0.88 16
32 H 0.07 1.16 7.48 -51.93 -0.39 0.77 16
33 H 0.07 1.53 6.40 -51.93 -0.33 1.20 16
LS Contribution 268.63 15.07 4.05 4.05
Total: -1.00 -32.10 268.63 -7.39 -39.49
By element:
Atomic # 1 Polarization: 4.48 SS G_CDS: -4.68 Total: -0.20 kcal
Atomic # 6 Polarization: -1.09 SS G_CDS: -0.97 Total: -2.06 kcal
Atomic # 7 Polarization: -46.34 SS G_CDS: -0.87 Total: -47.21 kcal
Atomic # 8 Polarization: -10.82 SS G_CDS: 0.10 Total: -10.72 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -32.10 -7.39 -39.49 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619057264.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.080 kcal
(2) G-P(sol) polarization free energy of solvation -32.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds