Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99651 * 2 1 4 4 H 1.48497 * 109.46953 * 239.99924 * 3 2 1 5 5 H 1.48495 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46921 * 119.99968 * 3 2 1 7 7 C 1.37871 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00432 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47601 * 185.17741 * 9 7 2 11 11 C 1.47989 * 111.00122 * 175.97826 * 10 9 7 12 12 C 1.55198 * 105.07110 * 213.90007 * 11 10 9 13 13 C 1.53839 * 101.35495 * 35.47731 * 12 11 10 14 14 C 1.52913 * 111.97219 * 203.80861 * 13 12 11 15 15 N 1.47148 * 105.12129 * 215.63045 * 14 13 12 16 16 C 1.34604 * 111.30662 * 15.59652 * 15 14 13 17 17 O 1.21288 * 124.94171 * 179.64447 * 16 15 14 18 18 C 1.51641 * 110.11869 * 359.65749 * 16 15 14 19 19 C 1.47844 * 110.99538 * 55.20527 * 10 9 7 20 20 H 0.97000 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46606 * 65.17816 * 9 7 2 22 22 H 1.09001 * 109.47054 * 305.18268 * 9 7 2 23 23 H 1.09006 * 110.33687 * 332.82204 * 11 10 9 24 24 H 1.08993 * 110.34096 * 94.96558 * 11 10 9 25 25 H 1.09004 * 111.02424 * 153.58569 * 12 11 10 26 26 H 1.09001 * 111.01650 * 277.48372 * 12 11 10 27 27 H 1.08992 * 110.31549 * 334.54658 * 14 13 12 28 28 H 1.09006 * 110.31038 * 96.72593 * 14 13 12 29 29 H 0.97002 * 124.34402 * 195.58383 * 15 14 13 30 30 H 1.08996 * 110.55818 * 226.46453 * 18 16 15 31 31 H 1.09001 * 110.67731 * 103.69264 * 18 16 15 32 32 H 1.09004 * 109.99326 * 243.65996 * 19 10 9 33 33 H 1.09000 * 110.00397 * 4.99658 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2009 -3.6129 0.1238 11 6 1.4903 -4.9072 0.2240 12 6 2.3669 -5.7771 1.1639 13 6 2.8897 -4.7215 2.1534 14 6 4.1961 -5.1575 2.8177 15 7 4.1195 -4.6384 4.1925 16 6 2.8616 -4.2807 4.5109 17 8 2.5181 -3.8284 5.5826 18 6 1.9362 -4.5258 3.3348 19 6 3.0529 -3.4513 1.3212 20 1 -0.4850 0.8400 0.0004 21 1 0.6955 -2.5979 -0.9331 22 1 0.5570 -2.5180 0.8397 23 1 0.4997 -4.7631 0.6556 24 1 1.4107 -5.3727 -0.7583 25 1 1.7655 -6.5299 1.6737 26 1 3.1875 -6.2399 0.6157 27 1 4.2713 -6.2448 2.8274 28 1 5.0491 -4.7231 2.2963 29 1 4.8782 -4.5639 4.7924 30 1 1.2924 -3.6622 3.1680 31 1 1.3378 -5.4225 3.4962 32 1 4.0948 -3.3318 1.0238 33 1 2.7274 -2.5844 1.8963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619057264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -33.409303 kcal Electronic energy + Delta-G solvation = -15859.818233 eV Core-core repulsion = 13305.997336 eV Total energy + Delta-G solvation = -2553.820897 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.68498 -38.04540 -35.60697 -33.07132 -31.38805 -29.33673 -27.99847 -26.56447 -24.74127 -22.20474 -20.56190 -20.25131 -19.32991 -17.16932 -16.13030 -15.70382 -15.16398 -15.00668 -14.71206 -14.12489 -13.55626 -13.31724 -13.10873 -12.68541 -12.27350 -12.06080 -11.80647 -11.59453 -11.01211 -10.86014 -10.71023 -10.63655 -10.58451 -10.24833 -9.89725 -9.63671 -9.17948 -9.02798 -8.48222 -7.27922 -6.05639 -4.07517 2.74531 3.32558 3.36865 3.39251 3.44855 4.40010 4.41804 4.53379 4.67064 4.88167 5.23874 5.27630 5.31454 5.50080 5.52107 5.69680 5.77617 5.91228 6.01189 6.12626 6.28648 6.41338 6.54912 6.65360 6.86667 7.05951 7.18341 7.34990 7.75919 7.97823 8.15492 8.36372 8.48698 9.00241 9.57322 11.05246 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.008574 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.968779 B = 3264.783973 C = 3748.063963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.187 3.813 10 N -0.528 5.528 11 C 0.040 3.960 12 C -0.111 4.111 13 C -0.098 4.098 14 C 0.119 3.881 15 N -0.735 5.735 16 C 0.523 3.477 17 O -0.541 6.541 18 C -0.143 4.143 19 C 0.069 3.931 20 H 0.262 0.738 21 H 0.028 0.972 22 H -0.004 1.004 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.406 0.594 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -12.130 3.619 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.062 3.938 10 N -0.253 5.253 11 C -0.088 4.088 12 C -0.149 4.149 13 C -0.100 4.100 14 C -0.006 4.006 15 N -0.390 5.390 16 C 0.310 3.690 17 O -0.418 6.418 18 C -0.183 4.183 19 C -0.059 4.059 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.014 0.986 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.244 0.756 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.638 -11.748 3.636 13.975 hybrid contribution 0.228 1.007 0.859 1.343 sum 6.866 -10.742 4.495 13.518 Atomic orbital electron populations 1.69942 1.06052 1.26976 1.50535 1.24982 0.94861 0.99326 0.95260 0.86584 0.79516 0.82829 0.78663 1.20117 1.21290 1.20255 1.21124 0.93411 0.90083 1.50701 0.91991 1.19911 0.90223 0.87439 0.96277 1.63864 1.22706 1.02260 1.36429 1.23070 0.95907 0.91280 0.98554 1.22590 0.99704 0.96250 0.96359 1.21851 0.93989 0.98929 0.95222 1.21979 0.98647 0.98650 0.81327 1.46354 1.10302 1.65918 1.16469 1.21102 0.83821 0.75609 0.88446 1.90730 1.79265 1.45297 1.26467 1.22319 0.98061 1.05228 0.92693 1.22568 0.98777 0.94290 0.90231 0.92791 0.95357 0.98624 0.94134 0.91121 0.91134 0.90439 0.91068 0.89873 0.75589 0.87422 0.88028 0.91492 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.23 8.01 -34.44 -0.28 -14.50 16 8 H 0.06 1.69 7.36 -52.48 -0.39 1.30 16 9 C 0.19 4.76 4.58 -4.98 -0.02 4.73 16 10 N -0.53 -10.79 5.28 -233.05 -1.23 -12.02 16 11 C 0.04 0.65 6.69 -2.06 -0.01 0.64 16 12 C -0.11 -1.36 5.98 -25.13 -0.15 -1.51 16 13 C -0.10 -1.35 0.72 -154.21 -0.11 -1.46 16 14 C 0.12 1.27 6.99 -3.73 -0.03 1.25 16 15 N -0.73 -9.02 6.26 -59.59 -0.37 -9.39 16 16 C 0.52 8.39 8.46 -10.60 -0.09 8.30 16 17 O -0.54 -10.82 18.03 5.55 0.10 -10.72 16 18 C -0.14 -2.11 5.92 -27.38 -0.16 -2.27 16 19 C 0.07 1.26 5.17 -3.44 -0.02 1.24 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.00 -0.11 7.99 -51.93 -0.42 -0.53 16 23 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 26 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 28 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 29 H 0.41 4.17 8.96 -40.82 -0.37 3.80 16 30 H 0.11 1.88 7.68 -51.93 -0.40 1.48 16 31 H 0.10 1.28 7.61 -51.93 -0.40 0.88 16 32 H 0.07 1.16 7.48 -51.93 -0.39 0.77 16 33 H 0.07 1.53 6.40 -51.93 -0.33 1.20 16 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -32.10 268.63 -7.39 -39.49 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.68 Total: -0.20 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.97 Total: -2.06 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.87 Total: -47.21 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.10 Total: -10.72 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.10 -7.39 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619057264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.080 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds