Wall clock time and date at job start Mon Mar 30 2020 03:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99651 * 2 1 4 4 H 1.48497 * 109.46953 * 239.99924 * 3 2 1 5 5 H 1.48495 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46921 * 119.99968 * 3 2 1 7 7 C 1.37871 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00432 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47601 * 185.17741 * 9 7 2 11 11 C 1.47989 * 111.00122 * 175.97826 * 10 9 7 12 12 C 1.55198 * 105.07110 * 213.90007 * 11 10 9 13 13 C 1.53839 * 101.35495 * 35.47731 * 12 11 10 14 14 C 1.52913 * 111.97219 * 203.80861 * 13 12 11 15 15 N 1.47148 * 105.12129 * 215.63045 * 14 13 12 16 16 C 1.34604 * 111.30662 * 15.59652 * 15 14 13 17 17 O 1.21288 * 124.94171 * 179.64447 * 16 15 14 18 18 C 1.51641 * 110.11869 * 359.65749 * 16 15 14 19 19 C 1.47844 * 110.99538 * 55.20527 * 10 9 7 20 20 H 0.97000 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46606 * 65.17816 * 9 7 2 22 22 H 1.09001 * 109.47054 * 305.18268 * 9 7 2 23 23 H 1.09006 * 110.33687 * 332.82204 * 11 10 9 24 24 H 1.08993 * 110.34096 * 94.96558 * 11 10 9 25 25 H 1.09004 * 111.02424 * 153.58569 * 12 11 10 26 26 H 1.09001 * 111.01650 * 277.48372 * 12 11 10 27 27 H 1.08992 * 110.31549 * 334.54658 * 14 13 12 28 28 H 1.09006 * 110.31038 * 96.72593 * 14 13 12 29 29 H 0.97002 * 124.34402 * 195.58383 * 15 14 13 30 30 H 1.08996 * 110.55818 * 226.46453 * 18 16 15 31 31 H 1.09001 * 110.67731 * 103.69264 * 18 16 15 32 32 H 1.09004 * 109.99326 * 243.65996 * 19 10 9 33 33 H 1.09000 * 110.00397 * 4.99658 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2009 -3.6129 0.1238 11 6 1.4903 -4.9072 0.2240 12 6 2.3669 -5.7771 1.1639 13 6 2.8897 -4.7215 2.1534 14 6 4.1961 -5.1575 2.8177 15 7 4.1195 -4.6384 4.1925 16 6 2.8616 -4.2807 4.5109 17 8 2.5181 -3.8284 5.5826 18 6 1.9362 -4.5258 3.3348 19 6 3.0529 -3.4513 1.3212 20 1 -0.4850 0.8400 0.0004 21 1 0.6955 -2.5979 -0.9331 22 1 0.5570 -2.5180 0.8397 23 1 0.4997 -4.7631 0.6556 24 1 1.4107 -5.3727 -0.7583 25 1 1.7655 -6.5299 1.6737 26 1 3.1875 -6.2399 0.6157 27 1 4.2713 -6.2448 2.8274 28 1 5.0491 -4.7231 2.2963 29 1 4.8782 -4.5639 4.7924 30 1 1.2924 -3.6622 3.1680 31 1 1.3378 -5.4225 3.4962 32 1 4.0948 -3.3318 1.0238 33 1 2.7274 -2.5844 1.8963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619057264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:09 Heat of formation + Delta-G solvation = -59.365050 kcal Electronic energy + Delta-G solvation = -15860.943759 eV Core-core repulsion = 13305.997336 eV Total energy + Delta-G solvation = -2554.946422 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.88522 -39.43708 -36.98564 -35.01219 -32.93227 -30.68412 -29.22809 -28.36079 -26.18117 -23.87665 -21.85966 -21.65755 -20.57781 -18.51146 -18.08043 -16.97042 -16.78888 -16.35710 -16.14372 -15.69031 -14.80871 -14.62869 -14.58669 -14.12806 -13.84313 -13.65368 -13.36517 -13.02568 -12.81838 -12.54012 -12.27603 -12.02487 -11.82644 -11.76650 -11.71518 -11.23684 -10.90195 -10.65373 -10.08054 -8.97055 -8.23967 -6.33501 1.37618 1.40494 1.48165 1.49899 2.37213 2.43440 3.09262 3.29738 3.37581 3.44954 3.57195 3.97167 4.10677 4.45950 4.58129 4.65455 4.71126 4.77781 4.79239 4.92680 5.07800 5.10509 5.12888 5.25475 5.32295 5.35818 5.63451 5.82910 5.98082 6.01036 6.28081 6.61404 6.84170 7.22147 7.36499 8.87326 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.008574 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.968779 B = 3264.783973 C = 3748.063963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.204 3.796 10 N -0.537 5.537 11 C 0.030 3.970 12 C -0.091 4.091 13 C -0.091 4.091 14 C 0.124 3.876 15 N -0.718 5.718 16 C 0.515 3.485 17 O -0.591 6.591 18 C -0.141 4.141 19 C 0.069 3.931 20 H 0.264 0.736 21 H 0.000 1.000 22 H -0.037 1.037 23 H 0.024 0.976 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.418 0.582 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.128 -13.974 3.463 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.077 3.923 10 N -0.261 5.261 11 C -0.098 4.098 12 C -0.129 4.129 13 C -0.093 4.093 14 C 0.000 4.000 15 N -0.373 5.373 16 C 0.303 3.697 17 O -0.473 6.473 18 C -0.181 4.181 19 C -0.059 4.059 20 H 0.073 0.927 21 H 0.018 0.982 22 H -0.020 1.020 23 H 0.042 0.958 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.258 0.742 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.027 -13.630 3.452 16.709 hybrid contribution -0.504 1.541 0.863 1.837 sum 8.523 -12.089 4.314 15.408 Atomic orbital electron populations 1.70076 1.07713 1.27917 1.51654 1.25911 0.95735 1.03220 0.94849 0.85504 0.78278 0.78178 0.79126 1.18836 1.20872 1.19618 1.21467 0.93606 0.91274 1.50146 0.91857 1.19505 0.90256 0.89154 0.93355 1.63760 1.21898 1.02352 1.38066 1.23237 0.95865 0.90165 1.00502 1.22596 1.00012 0.95424 0.94877 1.21738 0.95743 0.97190 0.94627 1.22177 0.97002 1.01146 0.79645 1.46310 1.09333 1.64261 1.17348 1.21299 0.85183 0.75341 0.87913 1.90698 1.80340 1.47844 1.28391 1.22286 0.98060 1.04759 0.93039 1.22541 0.98421 0.95276 0.89662 0.92722 0.98232 1.01967 0.95780 0.89955 0.87954 0.87435 0.86763 0.88066 0.74159 0.91394 0.85348 0.90303 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.53 -30.04 8.01 25.60 0.21 -29.83 16 8 H 0.06 3.51 7.36 -2.91 -0.02 3.48 16 9 C 0.20 10.91 4.58 85.56 0.39 11.30 16 10 N -0.54 -22.06 5.28 -891.23 -4.71 -26.77 16 11 C 0.03 0.95 6.69 86.85 0.58 1.53 16 12 C -0.09 -1.85 5.98 31.63 0.19 -1.66 16 13 C -0.09 -2.27 0.72 -51.99 -0.04 -2.30 16 14 C 0.12 2.07 6.99 86.23 0.60 2.67 16 15 N -0.72 -15.57 6.26 -460.92 -2.89 -18.45 16 16 C 0.52 16.12 8.46 87.98 0.74 16.87 16 17 O -0.59 -24.07 18.03 -3.05 -0.06 -24.12 16 18 C -0.14 -4.08 5.92 30.17 0.18 -3.90 16 19 C 0.07 2.47 5.17 86.03 0.44 2.91 16 20 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 21 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 22 H -0.04 -2.20 7.99 -2.39 -0.02 -2.22 16 23 H 0.02 0.83 7.71 -2.38 -0.02 0.81 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.10 1.55 7.66 -2.39 -0.02 1.53 16 26 H 0.11 1.66 8.09 -2.39 -0.02 1.64 16 27 H 0.11 1.14 7.92 -2.39 -0.02 1.12 16 28 H 0.10 1.46 7.47 -2.38 -0.02 1.44 16 29 H 0.42 7.34 8.96 -92.71 -0.83 6.51 16 30 H 0.07 2.53 7.68 -2.39 -0.02 2.51 16 31 H 0.13 2.96 7.61 -2.39 -0.02 2.94 16 32 H 0.08 2.60 7.48 -2.38 -0.02 2.58 16 33 H 0.03 1.20 6.40 -2.39 -0.02 1.18 16 Total: -1.00 -74.35 268.63 -1.30 -75.65 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.28 Total: 5.48 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 3.76 Total: -1.90 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -7.31 Total: -102.19 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.35 -1.30 -75.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619057264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.285 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds