Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 119.99615 * 2 1 4 4 H 1.48509 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47529 * 299.99960 * 3 2 1 6 6 H 1.48497 * 109.47171 * 60.00262 * 3 2 1 7 7 C 1.40047 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99604 * 179.97438 * 7 2 1 9 9 C 1.46367 * 119.99959 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00680 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99802 * 179.97438 * 9 7 2 12 12 C 1.46510 * 120.00132 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47281 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.78627 * 75.80592 * 13 12 11 15 15 C 1.53506 * 113.47477 * 206.62088 * 13 12 11 16 16 C 1.53514 * 83.57452 * 140.79176 * 15 13 12 17 17 N 1.47474 * 87.93324 * 333.97253 * 16 15 13 18 18 C 1.46893 * 111.00100 * 138.70221 * 17 16 15 19 19 C 1.53008 * 117.50212 * 147.77736 * 18 17 16 20 20 C 1.53000 * 117.50032 * 79.12004 * 18 17 16 21 21 H 0.96997 * 120.00324 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00057 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.46268 * 60.00138 * 12 11 9 24 24 H 1.08997 * 109.46925 * 300.00730 * 12 11 9 25 25 H 1.09001 * 114.16921 * 254.43405 * 15 13 12 26 26 H 1.09003 * 114.17533 * 27.14386 * 15 13 12 27 27 H 1.09008 * 113.47330 * 219.20734 * 16 15 13 28 28 H 1.09002 * 113.53485 * 88.75173 * 16 15 13 29 29 H 1.09007 * 115.55078 * 293.45164 * 18 17 16 30 30 H 1.08998 * 117.49556 * 0.02562 * 19 18 17 31 31 H 1.08994 * 117.49891 * 145.02298 * 19 18 17 32 32 H 1.09005 * 117.50291 * 214.98429 * 20 18 17 33 33 H 1.09006 * 117.49865 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0584 -2.4806 -0.0004 11 7 1.9492 -3.6476 0.0005 12 6 1.2167 -4.9165 0.0011 13 6 2.2110 -6.0793 0.0016 14 1 2.6726 -6.2396 0.9760 15 6 1.6517 -7.3624 -0.6287 16 6 3.0672 -7.4887 -1.2092 17 7 3.1826 -6.0221 -1.1065 18 6 4.5127 -5.6313 -0.6208 19 6 5.0901 -4.3088 -1.1292 20 6 5.6630 -5.6371 -1.6295 21 1 -0.4850 0.8400 0.0004 22 1 2.9191 -3.6475 0.0002 23 1 0.5898 -4.9743 -0.8887 24 1 0.5903 -4.9740 0.8913 25 1 1.3941 -8.1382 0.0923 26 1 0.8766 -7.1915 -1.3758 27 1 3.0845 -7.8549 -2.2358 28 1 3.7581 -8.0253 -0.5587 29 1 4.7417 -5.9192 0.4054 30 1 4.4828 -3.7284 -1.8237 31 1 5.6992 -3.7267 -0.4377 32 1 6.6489 -5.9284 -1.2671 33 1 5.4329 -5.9312 -2.6536 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691742991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = 21.730848 kcal Electronic energy + Delta-G solvation = -15515.079600 eV Core-core repulsion = 12963.649760 eV Total energy + Delta-G solvation = -2551.429840 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23013 -36.95105 -35.99710 -33.01736 -32.09266 -28.40173 -27.65012 -25.75611 -22.86438 -21.96691 -21.08297 -19.61826 -19.47794 -17.18690 -16.51604 -15.36828 -15.16665 -14.49986 -14.42282 -13.89403 -13.68467 -13.18249 -12.92592 -12.31372 -11.94375 -11.49918 -11.36392 -11.21441 -11.16797 -11.01332 -10.81849 -10.50774 -10.32064 -10.15457 -10.09152 -9.84603 -8.78897 -8.74100 -7.50374 -7.31968 -6.10518 -4.54940 3.17113 3.24905 3.29486 3.81742 3.92451 4.17117 4.53590 4.68268 4.76032 4.99843 5.04819 5.08476 5.32478 5.41205 5.50471 5.58573 5.69864 5.72186 5.80926 5.85512 5.93384 6.12663 6.21987 6.24466 6.39135 6.59276 6.66751 7.27952 7.50858 8.06839 8.25353 8.44273 9.10705 9.68856 10.69564 10.89772 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.007574 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.137621 B = 3695.917027 C = 4434.579673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.584 6.584 11 N -0.761 5.761 12 C 0.151 3.849 13 C 0.022 3.978 14 H 0.077 0.923 15 C -0.139 4.139 16 C 0.001 3.999 17 N -0.432 5.432 18 C -0.034 4.034 19 C -0.158 4.158 20 C -0.171 4.171 21 H 0.266 0.734 22 H 0.381 0.619 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.528 -12.164 -0.916 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.467 6.467 11 N -0.417 5.417 12 C 0.025 3.975 13 C -0.088 4.088 14 H 0.095 0.905 15 C -0.177 4.177 16 C -0.128 4.128 17 N -0.155 5.155 18 C -0.144 4.144 19 C -0.195 4.195 20 C -0.208 4.208 21 H 0.077 0.923 22 H 0.214 0.786 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.357 -11.614 -1.495 14.386 hybrid contribution 1.252 0.331 0.777 1.511 sum 9.610 -11.283 -0.718 14.838 Atomic orbital electron populations 1.70039 1.07020 1.26952 1.35881 1.25699 0.94579 1.00188 0.92693 0.86363 0.80519 0.81977 0.78153 1.18816 1.20192 1.20235 1.20908 0.93494 0.89490 1.54269 0.91591 1.18206 0.87171 0.82554 0.76233 1.90584 1.14169 1.86998 1.54997 1.46019 1.08758 1.04576 1.82340 1.20794 0.92902 0.83251 1.00536 1.23722 0.94673 0.96236 0.94140 0.90500 1.23210 0.97140 0.96870 1.00516 1.23641 0.96511 0.90899 1.01762 1.68866 1.03445 1.12286 1.30889 1.23112 0.90688 1.04017 0.96557 1.23067 1.02468 0.90304 1.03677 1.22957 0.96287 1.02318 0.99255 0.92293 0.78639 0.92896 0.93275 0.90647 0.88538 0.89970 0.91668 0.89315 0.87357 0.88575 0.89083 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.75 11.83 55.55 0.66 -23.10 16 2 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 3 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 16 4 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.92 9.54 -35.64 -0.34 -16.26 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 9 C 0.55 16.50 7.75 -12.99 -0.10 16.40 16 10 O -0.58 -19.66 15.02 5.20 0.08 -19.58 16 11 N -0.76 -18.11 5.46 -61.72 -0.34 -18.45 16 12 C 0.15 3.07 5.81 -4.04 -0.02 3.05 16 13 C 0.02 0.33 3.26 -71.44 -0.23 0.10 16 14 H 0.08 1.08 7.65 -51.93 -0.40 0.69 16 15 C -0.14 -1.67 8.00 -26.20 -0.21 -1.88 16 16 C 0.00 0.01 7.70 -7.55 -0.06 -0.05 16 17 N -0.43 -6.38 6.15 -228.52 -1.41 -7.79 16 18 C -0.03 -0.46 4.15 -67.71 -0.28 -0.74 16 19 C -0.16 -2.20 9.17 -26.69 -0.24 -2.45 16 20 C -0.17 -2.00 10.44 -26.70 -0.28 -2.28 16 21 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 22 H 0.38 8.21 6.11 -40.82 -0.25 7.96 16 23 H 0.05 1.16 7.88 -51.93 -0.41 0.75 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.10 1.22 7.94 -51.93 -0.41 0.80 16 27 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 29 H 0.09 1.12 7.73 -51.92 -0.40 0.72 16 30 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 279.01 15.07 4.20 4.20 Total: -1.00 -34.88 279.01 -8.48 -43.36 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.79 Total: 7.44 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.87 Total: -1.70 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -1.09 Total: -49.33 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.08 Total: -19.58 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.88 -8.48 -43.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691742991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.088 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds