Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 119.99615 * 2 1 4 4 H 1.48509 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47529 * 299.99960 * 3 2 1 6 6 H 1.48497 * 109.47171 * 60.00262 * 3 2 1 7 7 C 1.40047 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99604 * 179.97438 * 7 2 1 9 9 C 1.46367 * 119.99959 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00680 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99802 * 179.97438 * 9 7 2 12 12 C 1.46510 * 120.00132 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47281 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.78627 * 75.80592 * 13 12 11 15 15 C 1.53506 * 113.47477 * 206.62088 * 13 12 11 16 16 C 1.53514 * 83.57452 * 140.79176 * 15 13 12 17 17 N 1.47474 * 87.93324 * 333.97253 * 16 15 13 18 18 C 1.46893 * 111.00100 * 138.70221 * 17 16 15 19 19 C 1.53008 * 117.50212 * 147.77736 * 18 17 16 20 20 C 1.53000 * 117.50032 * 79.12004 * 18 17 16 21 21 H 0.96997 * 120.00324 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00057 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.46268 * 60.00138 * 12 11 9 24 24 H 1.08997 * 109.46925 * 300.00730 * 12 11 9 25 25 H 1.09001 * 114.16921 * 254.43405 * 15 13 12 26 26 H 1.09003 * 114.17533 * 27.14386 * 15 13 12 27 27 H 1.09008 * 113.47330 * 219.20734 * 16 15 13 28 28 H 1.09002 * 113.53485 * 88.75173 * 16 15 13 29 29 H 1.09007 * 115.55078 * 293.45164 * 18 17 16 30 30 H 1.08998 * 117.49556 * 0.02562 * 19 18 17 31 31 H 1.08994 * 117.49891 * 145.02298 * 19 18 17 32 32 H 1.09005 * 117.50291 * 214.98429 * 20 18 17 33 33 H 1.09006 * 117.49865 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0584 -2.4806 -0.0004 11 7 1.9492 -3.6476 0.0005 12 6 1.2167 -4.9165 0.0011 13 6 2.2110 -6.0793 0.0016 14 1 2.6726 -6.2396 0.9760 15 6 1.6517 -7.3624 -0.6287 16 6 3.0672 -7.4887 -1.2092 17 7 3.1826 -6.0221 -1.1065 18 6 4.5127 -5.6313 -0.6208 19 6 5.0901 -4.3088 -1.1292 20 6 5.6630 -5.6371 -1.6295 21 1 -0.4850 0.8400 0.0004 22 1 2.9191 -3.6475 0.0002 23 1 0.5898 -4.9743 -0.8887 24 1 0.5903 -4.9740 0.8913 25 1 1.3941 -8.1382 0.0923 26 1 0.8766 -7.1915 -1.3758 27 1 3.0845 -7.8549 -2.2358 28 1 3.7581 -8.0253 -0.5587 29 1 4.7417 -5.9192 0.4054 30 1 4.4828 -3.7284 -1.8237 31 1 5.6992 -3.7267 -0.4377 32 1 6.6489 -5.9284 -1.2671 33 1 5.4329 -5.9312 -2.6536 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691742991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = -5.851831 kcal Electronic energy + Delta-G solvation = -15516.275675 eV Core-core repulsion = 12963.649760 eV Total energy + Delta-G solvation = -2552.625915 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35874 -39.12698 -37.04752 -35.05607 -34.30889 -30.02310 -28.91063 -27.68574 -24.19256 -23.08254 -22.12289 -21.58822 -20.74189 -19.21480 -17.63501 -17.45574 -16.61594 -16.06465 -15.77560 -15.57347 -15.16742 -14.62164 -14.30385 -14.14548 -13.54715 -13.10347 -12.88443 -12.67737 -12.62983 -12.47731 -12.35361 -12.12751 -11.98698 -11.59957 -11.18581 -10.95615 -10.90249 -9.90660 -9.74669 -9.41652 -8.29019 -6.85393 1.38607 1.39452 1.57302 2.24444 2.47403 2.80959 2.81585 3.21698 3.59470 3.63445 3.90568 4.03452 4.04352 4.07895 4.21466 4.39863 4.53268 4.58389 4.76899 4.80198 4.89597 4.96280 5.00745 5.08961 5.25946 5.30948 5.31497 5.34967 5.88726 6.22222 6.25986 6.32120 6.86437 7.58867 8.50613 8.68378 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.007574 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.137621 B = 3695.917027 C = 4434.579673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.748 5.748 12 C 0.149 3.851 13 C 0.024 3.976 14 H 0.094 0.906 15 C -0.129 4.129 16 C 0.012 3.988 17 N -0.463 5.463 18 C -0.042 4.042 19 C -0.181 4.181 20 C -0.142 4.142 21 H 0.274 0.726 22 H 0.394 0.606 23 H 0.029 0.971 24 H 0.036 0.964 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.062 -12.834 -0.685 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.609 4.609 8 H 0.101 0.899 9 C 0.339 3.661 10 O -0.524 6.524 11 N -0.403 5.403 12 C 0.024 3.976 13 C -0.085 4.085 14 H 0.112 0.888 15 C -0.167 4.167 16 C -0.116 4.116 17 N -0.186 5.186 18 C -0.151 4.151 19 C -0.219 4.219 20 C -0.180 4.180 21 H 0.084 0.916 22 H 0.228 0.772 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.122 0.878 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.940 -12.344 -1.270 16.542 hybrid contribution 0.443 0.480 0.681 0.944 sum 11.382 -11.863 -0.589 16.451 Atomic orbital electron populations 1.70203 1.09573 1.28858 1.36673 1.27003 0.95552 1.04994 0.91181 0.84971 0.79335 0.75297 0.78663 1.16975 1.19250 1.19078 1.21422 0.94509 0.90193 1.54791 0.89851 1.18660 0.86844 0.84543 0.76062 1.90532 1.16259 1.88115 1.57499 1.45742 1.09365 1.04571 1.80621 1.20932 0.94121 0.83837 0.98732 1.23692 0.94355 0.94953 0.95538 0.88832 1.23192 0.97424 0.95587 1.00497 1.23668 0.96227 0.88897 1.02832 1.68801 1.04093 1.14948 1.30761 1.23242 0.90733 1.03362 0.97794 1.23014 1.03521 0.91172 1.04193 1.23004 0.96810 0.99395 0.98769 0.91565 0.77202 0.95305 0.94533 0.87770 0.89673 0.89142 0.89292 0.87943 0.90643 0.87706 0.86309 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.22 11.83 21.84 0.26 -51.96 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 42.27 29.56 68.60 2.03 44.30 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.57 -34.08 9.54 24.83 0.24 -33.85 16 8 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.53 33.04 7.75 86.36 0.67 33.71 16 10 O -0.64 -44.97 15.02 -4.29 -0.06 -45.04 16 11 N -0.75 -36.69 5.46 -467.40 -2.55 -39.24 16 12 C 0.15 6.26 5.81 86.38 0.50 6.76 16 13 C 0.02 0.71 3.26 42.18 0.14 0.84 16 14 H 0.09 2.42 7.65 -2.39 -0.02 2.41 16 15 C -0.13 -2.83 8.00 30.94 0.25 -2.59 16 16 C 0.01 0.23 7.70 83.57 0.64 0.88 16 17 N -0.46 -12.98 6.15 -876.91 -5.39 -18.38 16 18 C -0.04 -1.05 4.15 44.92 0.19 -0.86 16 19 C -0.18 -4.90 9.17 30.62 0.28 -4.62 16 20 C -0.14 -2.95 10.44 30.62 0.32 -2.63 16 21 H 0.27 15.64 8.29 -92.71 -0.77 14.88 16 22 H 0.39 17.20 6.11 -92.71 -0.57 16.63 16 23 H 0.03 1.33 7.88 -2.39 -0.02 1.31 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 2.08 7.94 -2.39 -0.02 2.06 16 27 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.09 1.41 7.91 -2.39 -0.02 1.39 16 29 H 0.10 2.27 7.73 -2.38 -0.02 2.25 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -79.04 279.01 -1.50 -80.54 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.53 Total: 30.08 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 3.69 Total: -0.30 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -7.69 Total: -109.58 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.06 Total: -45.04 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -79.04 -1.50 -80.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691742991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.688 kcal (2) G-P(sol) polarization free energy of solvation -79.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds