Wall clock time and date at job start Mon Mar 30 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48503 * 109.46660 * 269.99820 * 3 2 1 5 5 H 1.48493 * 109.47167 * 29.99683 * 3 2 1 6 6 H 1.48496 * 109.46971 * 150.00245 * 3 2 1 7 7 C 1.37878 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99420 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00152 * 179.97438 * 7 2 1 10 10 H 1.08996 * 110.63061 * 56.89289 * 9 7 2 11 11 C 1.55139 * 110.70883 * 293.59936 * 9 7 2 12 12 C 1.54904 * 101.65629 * 205.96436 * 11 9 7 13 13 N 1.47843 * 104.79405 * 37.06983 * 12 11 9 14 14 C 1.46900 * 110.99888 * 213.63369 * 13 12 11 15 15 H 1.09002 * 110.43190 * 59.76279 * 14 13 12 16 16 C 1.54619 * 110.48932 * 297.07281 * 14 13 12 17 17 C 1.54482 * 101.76807 * 266.11923 * 16 14 13 18 18 N 1.46768 * 105.46883 * 334.58507 * 17 16 14 19 19 C 1.34415 * 111.30374 * 17.01437 * 18 17 16 20 20 O 1.21274 * 124.94279 * 179.55544 * 19 18 17 21 21 C 1.47446 * 108.56761 * 335.90448 * 13 12 11 22 22 H 0.96998 * 120.00160 * 359.97438 * 1 2 3 23 23 H 1.09005 * 110.98834 * 324.05979 * 11 9 7 24 24 H 1.09000 * 110.99151 * 87.83417 * 11 9 7 25 25 H 1.08998 * 110.37178 * 278.24131 * 12 11 9 26 26 H 1.09003 * 110.37142 * 155.89745 * 12 11 9 27 27 H 1.09000 * 110.97073 * 24.23418 * 16 14 13 28 28 H 1.09001 * 110.97445 * 147.99741 * 16 14 13 29 29 H 1.09001 * 110.24755 * 215.58536 * 17 16 14 30 30 H 1.08996 * 110.32215 * 93.62058 * 17 16 14 31 31 H 0.97003 * 124.34556 * 196.99576 * 18 17 16 32 32 H 1.08997 * 109.88511 * 120.39826 * 21 13 12 33 33 H 1.08994 * 109.88544 * 241.58152 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8959 -0.6362 0.8539 11 6 4.0596 -0.6139 -1.3304 12 6 5.4461 -1.2984 -1.4227 13 7 5.2302 -2.6615 -0.8923 14 6 6.4222 -3.1452 -0.1830 15 1 6.6625 -2.4858 0.6510 16 6 7.6215 -3.2553 -1.1526 17 6 7.5369 -4.7340 -1.5918 18 7 6.8482 -5.4286 -0.4976 19 6 6.2091 -4.5610 0.3060 20 8 5.5562 -4.8684 1.2806 21 6 4.0572 -2.6374 0.0007 22 1 -0.4850 0.8400 0.0004 23 1 3.4266 -0.8990 -2.1708 24 1 4.1617 0.4697 -1.2712 25 1 6.1743 -0.7646 -0.8121 26 1 5.7790 -1.3430 -2.4597 27 1 7.4967 -2.5876 -2.0049 28 1 8.5604 -3.0549 -0.6362 29 1 8.5372 -5.1447 -1.7288 30 1 6.9637 -4.8225 -2.5146 31 1 6.8533 -6.3902 -0.3707 32 1 3.2948 -3.3223 -0.3702 33 1 4.3541 -2.9212 1.0103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691846237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:06 Heat of formation + Delta-G solvation = -24.846955 kcal Electronic energy + Delta-G solvation = -15897.257272 eV Core-core repulsion = 13343.807667 eV Total energy + Delta-G solvation = -2553.449605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44984 -37.73823 -36.18070 -33.10170 -31.46761 -29.29870 -28.56469 -26.53097 -24.05096 -22.15209 -20.61924 -19.98412 -19.27046 -17.34038 -16.88937 -16.52406 -15.12821 -14.81075 -14.53773 -13.83444 -13.68314 -13.45046 -12.92800 -12.66151 -12.50592 -12.37867 -12.02390 -11.55678 -11.42105 -11.00545 -10.69397 -10.50115 -10.07973 -9.83549 -9.57126 -9.44134 -9.05715 -9.04008 -8.53095 -7.89248 -6.04547 -4.03215 2.68175 3.28051 3.37006 3.38506 3.41008 4.37241 4.40914 4.43120 4.52624 4.89310 5.19392 5.24878 5.38935 5.48440 5.58146 5.71600 5.80077 5.86172 5.94940 6.17188 6.24179 6.63024 6.76367 6.79180 6.83767 7.02736 7.11822 7.25747 7.48518 7.61902 7.78321 8.36937 8.55750 9.00080 9.57443 11.08788 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046848 B = 0.007785 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.533663 B = 3595.718981 C = 3937.818228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.076 0.924 9 C -0.002 4.002 10 H 0.032 0.968 11 C -0.134 4.134 12 C 0.044 3.956 13 N -0.513 5.513 14 C 0.043 3.957 15 H 0.073 0.927 16 C -0.130 4.130 17 C 0.111 3.889 18 N -0.731 5.731 19 C 0.532 3.468 20 O -0.526 6.526 21 C 0.052 3.948 22 H 0.263 0.737 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.407 0.593 32 H 0.077 0.923 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.591 -5.450 -4.779 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.094 0.906 9 C -0.022 4.022 10 H 0.050 0.950 11 C -0.172 4.172 12 C -0.084 4.084 13 N -0.240 5.240 14 C -0.070 4.070 15 H 0.091 0.909 16 C -0.168 4.168 17 C -0.014 4.014 18 N -0.387 5.387 19 C 0.317 3.683 20 O -0.400 6.400 21 C -0.075 4.075 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.245 0.755 32 H 0.095 0.905 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.990 -5.725 -4.669 18.527 hybrid contribution 0.568 1.087 0.599 1.365 sum 17.558 -4.639 -4.069 18.611 Atomic orbital electron populations 1.69900 1.06250 1.26853 1.50944 1.24989 0.94650 0.98920 0.94512 0.86895 0.80100 0.83843 0.78322 1.20281 1.21963 1.19167 1.20951 0.88220 0.94576 1.50524 0.90636 1.20345 0.97442 0.91718 0.92680 0.95007 1.23110 0.94127 0.98037 1.01942 1.23056 0.98544 0.87793 0.98965 1.63724 1.01924 1.24040 1.34273 1.22499 0.93213 0.94490 0.96777 0.90933 1.22704 0.97170 0.96476 1.00449 1.21959 0.96822 0.92236 0.90362 1.46110 1.53961 1.09504 1.29131 1.20686 0.77424 0.88359 0.81813 1.90752 1.39589 1.82645 1.27026 1.22947 0.90552 0.99560 0.94422 0.92694 0.90449 0.92908 0.94310 0.91060 0.88536 0.90145 0.90839 0.90688 0.75478 0.90461 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.88 21.79 24.81 -169.99 -4.22 17.57 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.34 6.46 56.52 0.36 -5.97 16 7 C -0.50 -14.46 9.05 -34.44 -0.31 -14.77 16 8 H 0.08 2.36 7.78 -52.49 -0.41 1.95 16 9 C 0.00 -0.05 2.32 -89.95 -0.21 -0.26 16 10 H 0.03 0.79 7.03 -51.93 -0.36 0.42 16 11 C -0.13 -2.80 5.45 -24.60 -0.13 -2.94 16 12 C 0.04 0.73 5.60 -2.30 -0.01 0.71 16 13 N -0.51 -9.10 5.04 -223.31 -1.13 -10.22 16 14 C 0.04 0.63 2.23 -67.73 -0.15 0.48 16 15 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 16 C -0.13 -1.30 6.67 -25.10 -0.17 -1.46 16 17 C 0.11 0.98 7.78 -3.12 -0.02 0.96 16 18 N -0.73 -8.57 6.24 -59.20 -0.37 -8.94 16 19 C 0.53 8.63 7.47 -10.86 -0.08 8.54 16 20 O -0.53 -10.75 16.62 5.56 0.09 -10.66 16 21 C 0.05 1.13 5.85 -2.84 -0.02 1.11 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.08 1.70 8.04 -51.93 -0.42 1.28 16 24 H 0.05 1.10 5.59 -51.93 -0.29 0.81 16 25 H 0.04 0.60 7.78 -51.93 -0.40 0.19 16 26 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 27 H 0.10 0.91 6.76 -51.93 -0.35 0.56 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 3.98 8.96 -40.82 -0.37 3.62 16 32 H 0.08 1.83 7.63 -51.93 -0.40 1.44 16 33 H 0.06 1.25 6.22 -51.93 -0.32 0.93 16 LS Contribution 259.59 15.07 3.91 3.91 Total: -1.00 -33.18 259.59 -6.72 -39.91 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.58 Total: 1.22 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.21 Total: -5.65 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.72 Total: -46.30 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.22 Total: 17.57 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.18 -6.72 -39.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691846237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.058 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds