Wall clock time and date at job start Mon Mar 30 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48500 * 109.47005 * 269.99535 * 3 2 1 5 5 H 1.48495 * 109.47166 * 29.99939 * 3 2 1 6 6 H 1.48502 * 109.46998 * 150.00237 * 3 2 1 7 7 C 1.38953 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00500 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00149 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00594 * 180.02562 * 10 9 7 13 13 C 1.54991 * 113.92120 * 63.19487 * 12 10 9 14 14 C 1.54065 * 104.76378 * 146.85788 * 13 12 10 15 15 N 1.48236 * 106.69372 * 1.01936 * 14 13 12 16 16 C 1.48806 * 105.17742 * 332.50872 * 15 14 13 17 17 C 1.47676 * 108.91663 * 88.16757 * 15 14 13 18 18 C 1.52995 * 109.28324 * 312.90919 * 17 15 14 19 19 C 1.53154 * 110.09211 * 304.78668 * 18 17 15 20 20 H 0.97004 * 119.99342 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00574 * 0.02562 * 9 7 2 22 22 H 1.09009 * 110.37916 * 265.67740 * 13 12 10 23 23 H 1.09000 * 110.38225 * 28.03563 * 13 12 10 24 24 H 1.08993 * 110.01103 * 241.70455 * 14 13 12 25 25 H 1.08997 * 110.05058 * 120.34452 * 14 13 12 26 26 H 1.09002 * 110.93353 * 284.56611 * 16 15 14 27 27 H 1.09006 * 110.93101 * 160.90190 * 16 15 14 28 28 H 1.08997 * 109.50279 * 72.84862 * 17 15 14 29 29 H 1.08996 * 109.50395 * 192.93416 * 17 15 14 30 30 H 1.08994 * 109.36872 * 184.59894 * 18 17 15 31 31 H 1.08997 * 109.36847 * 64.97778 * 18 17 15 32 32 H 1.09001 * 109.63087 * 294.29954 * 19 18 17 33 33 H 1.09000 * 109.63206 * 173.70539 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3232 -2.3906 0.0016 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0011 12 6 1.2435 -4.8630 0.0022 13 6 0.3755 -5.0881 -1.2620 14 6 0.4126 -6.6101 -1.4978 15 7 1.2336 -7.1899 -0.4083 16 6 2.1729 -6.1069 -0.0097 17 6 0.3593 -7.4858 0.7445 18 6 -0.5382 -6.2780 1.0210 19 6 0.3159 -5.0226 1.2213 20 1 -0.4849 0.8401 0.0004 21 1 0.3532 -2.3906 0.0016 22 1 -0.6476 -4.7563 -1.0840 23 1 0.8032 -4.5612 -2.1149 24 1 0.8680 -6.8268 -2.4640 25 1 -0.5973 -7.0186 -1.4617 26 1 2.9689 -5.9913 -0.7454 27 1 2.5853 -6.2944 0.9818 28 1 -0.2591 -8.3545 0.5187 29 1 0.9717 -7.6931 1.6220 30 1 -1.1258 -6.4626 1.9202 31 1 -1.2108 -6.1266 0.1767 32 1 0.9150 -5.1278 2.1259 33 1 -0.3308 -4.1493 1.3064 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691879671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:48 Heat of formation + Delta-G solvation = -34.954375 kcal Electronic energy + Delta-G solvation = -16118.524197 eV Core-core repulsion = 13564.636301 eV Total energy + Delta-G solvation = -2553.887896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78697 -37.62820 -33.97964 -32.17717 -31.77832 -30.88537 -28.90708 -25.30755 -24.24655 -22.63565 -21.08940 -19.85111 -18.43907 -17.89890 -16.26737 -15.87345 -15.10700 -14.45886 -14.10576 -13.58460 -13.51597 -13.34973 -12.64428 -12.59546 -12.26370 -12.16407 -11.58170 -11.35874 -11.20513 -11.07413 -10.76004 -10.51003 -10.45620 -10.40261 -10.20294 -10.12119 -9.53259 -8.44655 -8.22930 -7.99339 -6.44553 -3.85283 3.15629 3.24804 3.30804 3.81920 4.13867 4.22958 4.69888 4.90247 5.08939 5.15436 5.21387 5.24431 5.30223 5.39889 5.63624 5.71305 5.74951 5.80715 5.98106 6.02918 6.11742 6.15353 6.29650 6.35935 6.40964 6.53782 6.56750 6.97430 7.13149 7.52565 8.03614 8.58055 9.14630 9.52450 10.03676 10.72942 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051370 B = 0.007461 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.936349 B = 3751.869235 C = 3920.151364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.556 5.556 10 C 0.463 3.537 11 O -0.593 6.593 12 C -0.103 4.103 13 C -0.136 4.136 14 C 0.032 3.968 15 N -0.500 5.500 16 C 0.059 3.941 17 C 0.033 3.967 18 C -0.154 4.154 19 C -0.107 4.107 20 H 0.272 0.728 21 H 0.392 0.608 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -10.552 0.316 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.249 3.751 11 O -0.479 6.479 12 C -0.108 4.108 13 C -0.175 4.175 14 C -0.097 4.097 15 N -0.221 5.221 16 C -0.069 4.069 17 C -0.095 4.095 18 C -0.193 4.193 19 C -0.145 4.145 20 H 0.082 0.918 21 H 0.226 0.774 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.037 -10.934 0.142 11.349 hybrid contribution -0.792 1.755 0.314 1.951 sum -3.829 -9.179 0.456 9.956 Atomic orbital electron populations 1.69616 1.05960 1.28204 1.50337 1.25272 0.95632 0.99755 0.97185 0.85856 0.79263 0.80746 0.78435 1.20355 1.20891 1.19376 1.19747 0.93424 0.82303 1.47684 0.87884 1.41865 1.09206 1.04515 1.63434 1.19220 0.87647 0.84009 0.84265 1.90515 1.13786 1.87160 1.56409 1.22444 0.96364 0.96091 0.95931 1.22901 0.99997 0.96925 0.97702 1.23054 0.97654 0.92783 0.96214 1.66462 1.13642 1.35628 1.06370 1.23288 0.95024 0.86711 1.01909 1.22576 0.95494 0.96942 0.94536 1.22259 0.98933 0.95861 1.02222 1.21823 0.97609 0.97860 0.97223 0.91832 0.77420 0.90869 0.90964 0.90393 0.91215 0.89203 0.90365 0.90867 0.90862 0.91634 0.91226 0.91626 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.22 5.24 -10.96 -0.06 -14.27 16 10 C 0.46 11.15 6.79 -10.99 -0.07 11.07 16 11 O -0.59 -16.39 15.75 5.54 0.09 -16.30 16 12 C -0.10 -1.89 0.96 -152.87 -0.15 -2.04 16 13 C -0.14 -2.18 5.52 -25.12 -0.14 -2.32 16 14 C 0.03 0.43 6.20 -2.53 -0.02 0.42 16 15 N -0.50 -7.31 6.06 -228.99 -1.39 -8.69 16 16 C 0.06 1.02 5.44 -1.56 -0.01 1.01 16 17 C 0.03 0.41 5.84 -3.40 -0.02 0.40 16 18 C -0.15 -1.95 5.52 -26.65 -0.15 -2.10 16 19 C -0.11 -1.72 4.97 -26.12 -0.13 -1.85 16 20 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 21 H 0.39 9.69 7.50 -40.82 -0.31 9.38 16 22 H 0.07 1.10 6.94 -51.92 -0.36 0.74 16 23 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16 26 H 0.09 1.69 7.94 -51.93 -0.41 1.27 16 27 H 0.08 1.32 7.70 -51.93 -0.40 0.92 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.86 5.37 -51.93 -0.28 0.58 16 32 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 LS Contribution 261.37 15.07 3.94 3.94 Total: -1.00 -30.04 261.37 -7.18 -37.23 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.54 Total: 9.31 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.92 Total: -3.49 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.72 Total: -46.72 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.04 -7.18 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691879671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.271 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds