Wall clock time and date at job start Mon Mar 30 2020 03:35:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30168 * 126.80561 * 2 1
4 4 O 1.20921 * 111.60540 * 180.02562 * 3 2 1
5 5 C 1.34036 * 111.56666 * 359.76199 * 4 3 2
6 6 C 1.35450 * 106.44612 * 0.38286 * 5 4 3
7 7 C 1.50699 * 128.00690 * 179.91269 * 6 5 4
8 8 N 1.46893 * 109.47125 * 259.67443 * 7 6 5
9 9 C 1.46904 * 111.00244 * 179.97438 * 8 7 6
10 10 H 1.09002 * 109.47164 * 35.00209 * 9 8 7
11 11 C 1.53004 * 109.47219 * 275.00615 * 9 8 7
12 12 C 1.53002 * 109.47145 * 155.00252 * 9 8 7
13 13 C 1.50696 * 109.46919 * 295.00022 * 12 9 8
14 14 H 1.07999 * 120.00202 * 359.97438 * 13 12 9
15 15 C 1.37884 * 119.99746 * 180.02562 * 13 12 9
16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 12
17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 12
18 18 H 1.48500 * 109.47035 * 60.00183 * 17 15 13
19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13
20 20 H 1.48503 * 109.47237 * 299.99939 * 17 15 13
21 21 H 1.09006 * 109.46824 * 269.97616 * 1 2 3
22 22 H 1.09004 * 109.46991 * 29.96864 * 1 2 3
23 23 H 1.08991 * 109.47576 * 149.97386 * 1 2 3
24 24 H 1.08004 * 126.77966 * 180.28833 * 5 4 3
25 25 H 1.09010 * 109.47070 * 139.67551 * 7 6 5
26 26 H 1.08997 * 109.47616 * 19.68133 * 7 6 5
27 27 H 1.00898 * 111.00298 * 56.04995 * 8 7 6
28 28 H 1.09000 * 109.47210 * 180.02562 * 11 9 8
29 29 H 1.09002 * 109.46722 * 299.99865 * 11 9 8
30 30 H 1.09001 * 109.47356 * 59.99403 * 11 9 8
31 31 H 1.09000 * 109.46497 * 175.00287 * 12 9 8
32 32 H 1.08999 * 109.46623 * 55.00351 * 12 9 8
33 33 H 0.97001 * 120.00651 * 359.71956 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2869 1.0422 0.0000
4 8 3.4538 0.7252 -0.0005
5 6 3.6024 -0.6069 0.0043
6 6 2.3539 -1.1321 -0.0006
7 6 1.9589 -2.5864 -0.0001
8 7 1.5973 -2.9961 -1.3637
9 6 1.2064 -4.4116 -1.4019
10 1 0.6855 -4.6698 -0.4799
11 6 2.4567 -5.2824 -1.5422
12 6 0.2802 -4.6529 -2.5956
13 6 -1.0040 -3.8898 -2.3972
14 1 -1.1457 -3.2929 -1.5084
15 6 -1.9987 -3.9547 -3.3499
16 7 -1.8287 -4.6867 -4.4291
17 14 -3.5909 -3.0094 -3.1035
18 1 -3.2934 -1.5587 -2.9937
19 1 -4.4898 -3.2435 -4.2622
20 1 -4.2551 -3.4742 -1.8593
21 1 -0.3633 -0.0004 1.0277
22 1 -0.3633 0.8903 -0.5134
23 1 -0.3634 -0.8897 -0.5142
24 1 4.5338 -1.1536 0.0093
25 1 1.1045 -2.7307 0.6612
26 1 2.7958 -3.1901 0.3508
27 1 2.3512 -2.8120 -2.0085
28 1 2.1666 -6.3327 -1.5711
29 1 2.9776 -5.0242 -2.4643
30 1 3.1165 -5.1105 -0.6918
31 1 0.0615 -5.7176 -2.6763
32 1 0.7682 -4.3119 -3.5087
33 1 -1.0020 -5.1778 -4.5569
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695841592.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:38
Heat of formation + Delta-G solvation = 22.476101 kcal
Electronic energy + Delta-G solvation = -15379.217084 eV
Core-core repulsion = 12827.819561 eV
Total energy + Delta-G solvation = -2551.397524 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-45.87949 -38.61254 -36.13136 -34.92745 -33.36288 -31.20514 -29.54857 -28.75937
-26.54015 -24.88517 -22.40789 -22.13268 -21.64333 -18.90803 -18.55115 -18.28922
-16.46245 -16.13004 -15.67463 -15.42496 -15.15764 -14.81318 -14.21191 -14.03610
-13.70703 -13.60135 -13.31792 -13.26718 -12.94785 -12.66676 -12.48510 -12.13075
-11.99980 -11.92130 -11.42601 -10.76328 -10.56823 -10.45983 -10.39763 -9.05086
-8.52604 -6.17900 0.60568 1.23610 1.54377 1.63305 1.80947 2.44142
2.64009 3.21069 3.29828 3.54223 3.70271 3.97358 4.15421 4.20946
4.42293 4.51060 4.60507 4.62143 4.66196 4.72932 4.86299 4.95178
5.04865 5.15574 5.18045 5.26800 5.30374 5.50596 6.16474 6.33080
6.39423 6.62778 6.78525 7.37164 7.59319 8.88419
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.024883 B = 0.008173 C = 0.006484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1124.977603 B = 3424.990850 C = 4317.595805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.021 3.979
3 N -0.402 5.402
4 O 0.090 5.910
5 C -0.037 4.037
6 C -0.208 4.208
7 C 0.144 3.856
8 N -0.679 5.679
9 C 0.107 3.893
10 H 0.063 0.937
11 C -0.171 4.171
12 C 0.020 3.980
13 C -0.572 4.572
14 H 0.052 0.948
15 C -0.049 4.049
16 N -0.953 5.953
17 Si 1.110 2.890
18 H -0.273 1.273
19 H -0.290 1.290
20 H -0.269 1.269
21 H 0.092 0.908
22 H 0.071 0.929
23 H 0.077 0.923
24 H 0.260 0.740
25 H 0.072 0.928
26 H 0.064 0.936
27 H 0.336 0.664
28 H 0.054 0.946
29 H 0.052 0.948
30 H 0.073 0.927
31 H -0.013 1.013
32 H -0.017 1.017
33 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.311 5.170 11.359 16.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.138 4.138
3 N -0.110 5.110
4 O 0.028 5.972
5 C -0.119 4.119
6 C -0.213 4.213
7 C 0.015 3.985
8 N -0.310 5.310
9 C -0.002 4.002
10 H 0.081 0.919
11 C -0.230 4.230
12 C -0.017 4.017
13 C -0.610 4.610
14 H 0.070 0.930
15 C -0.245 4.245
16 N -0.593 5.593
17 Si 0.933 3.067
18 H -0.199 1.199
19 H -0.216 1.216
20 H -0.194 1.194
21 H 0.110 0.890
22 H 0.090 0.910
23 H 0.096 0.904
24 H 0.276 0.724
25 H 0.090 0.910
26 H 0.082 0.918
27 H 0.154 0.846
28 H 0.074 0.926
29 H 0.071 0.929
30 H 0.092 0.908
31 H 0.005 0.995
32 H 0.002 0.998
33 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 8.983 7.053 10.753 15.686
hybrid contribution 2.144 -1.798 0.288 2.813
sum 11.127 5.255 11.041 16.533
Atomic orbital electron populations
1.20186 0.85881 1.03766 1.03667 1.23812 0.99674 0.88897 1.01383
1.73812 0.90148 1.24978 1.22034 1.84746 1.20916 1.24148 1.67438
1.26532 1.01471 0.82782 1.01105 1.21378 0.92733 0.97455 1.09721
1.20068 0.99947 0.87507 0.90978 1.60311 1.44116 1.19821 1.06720
1.21315 0.94400 0.86228 0.98291 0.91912 1.22435 0.98120 1.00509
1.01903 1.19183 0.94865 0.93914 0.93784 1.22296 1.01557 1.29820
1.07323 0.92980 1.27200 1.06330 0.97952 0.92977 1.70921 1.28337
1.30954 1.29050 0.83022 0.72123 0.75467 0.76135 1.19869 1.21627
1.19406 0.88970 0.91024 0.90397 0.72425 0.90956 0.91784 0.84566
0.92648 0.92932 0.90779 0.99468 0.99835 0.93877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.30 10.39 71.24 0.74 -1.56 16
2 C 0.02 0.64 7.33 43.58 0.32 0.96 16
3 N -0.40 -12.46 12.07 -49.57 -0.60 -13.05 16
4 O 0.09 2.31 11.20 71.67 0.80 3.11 16
5 C -0.04 -0.73 12.26 67.18 0.82 0.09 16
6 C -0.21 -5.44 5.84 -19.74 -0.12 -5.55 16
7 C 0.14 3.80 5.97 85.56 0.51 4.31 16
8 N -0.68 -23.12 5.95 -495.56 -2.95 -26.07 16
9 C 0.11 4.01 2.53 44.92 0.11 4.12 16
10 H 0.06 2.39 7.80 -2.39 -0.02 2.37 16
11 C -0.17 -4.94 9.16 71.98 0.66 -4.28 16
12 C 0.02 1.01 3.96 29.85 0.12 1.13 16
13 C -0.57 -32.20 8.84 25.60 0.23 -31.97 16
14 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16
15 C -0.05 -2.90 5.46 84.66 0.46 -2.43 16
16 N -0.95 -60.36 13.65 21.45 0.29 -60.07 16
17 Si 1.11 51.76 29.90 68.60 2.05 53.81 16
18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16
19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
21 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16
22 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16
23 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16
24 H 0.26 2.27 8.06 -2.91 -0.02 2.24 16
25 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16
26 H 0.06 1.31 7.43 -2.39 -0.02 1.29 16
27 H 0.34 10.81 8.46 -89.70 -0.76 10.05 16
28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
29 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16
30 H 0.07 1.66 7.45 -2.39 -0.02 1.64 16
31 H -0.01 -0.69 8.00 -2.39 -0.02 -0.71 16
32 H -0.02 -0.91 8.01 -2.39 -0.02 -0.93 16
33 H 0.25 16.11 7.22 -92.71 -0.67 15.44 16
Total: -1.00 -70.08 284.79 3.89 -66.18
By element:
Atomic # 1 Polarization: 10.84 SS G_CDS: 0.44 Total: 11.28 kcal
Atomic # 6 Polarization: -39.05 SS G_CDS: 3.86 Total: -35.19 kcal
Atomic # 7 Polarization: -95.94 SS G_CDS: -3.26 Total: -99.20 kcal
Atomic # 8 Polarization: 2.31 SS G_CDS: 0.80 Total: 3.11 kcal
Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal
Total: -70.08 3.89 -66.18 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695841592.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.656 kcal
(2) G-P(sol) polarization free energy of solvation -70.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.476 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds