Wall clock time and date at job start Mon Mar 30 2020 03:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30168 * 126.80561 * 2 1 4 4 O 1.20921 * 111.60540 * 180.02562 * 3 2 1 5 5 C 1.34036 * 111.56666 * 359.76199 * 4 3 2 6 6 C 1.35450 * 106.44612 * 0.38286 * 5 4 3 7 7 C 1.50699 * 128.00690 * 179.91269 * 6 5 4 8 8 N 1.46893 * 109.47125 * 259.67443 * 7 6 5 9 9 C 1.46904 * 111.00244 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47164 * 35.00209 * 9 8 7 11 11 C 1.53004 * 109.47219 * 275.00615 * 9 8 7 12 12 C 1.53002 * 109.47145 * 155.00252 * 9 8 7 13 13 C 1.50696 * 109.46919 * 295.00022 * 12 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 12 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 12 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00183 * 17 15 13 19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 299.99939 * 17 15 13 21 21 H 1.09006 * 109.46824 * 269.97616 * 1 2 3 22 22 H 1.09004 * 109.46991 * 29.96864 * 1 2 3 23 23 H 1.08991 * 109.47576 * 149.97386 * 1 2 3 24 24 H 1.08004 * 126.77966 * 180.28833 * 5 4 3 25 25 H 1.09010 * 109.47070 * 139.67551 * 7 6 5 26 26 H 1.08997 * 109.47616 * 19.68133 * 7 6 5 27 27 H 1.00898 * 111.00298 * 56.04995 * 8 7 6 28 28 H 1.09000 * 109.47210 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.46722 * 299.99865 * 11 9 8 30 30 H 1.09001 * 109.47356 * 59.99403 * 11 9 8 31 31 H 1.09000 * 109.46497 * 175.00287 * 12 9 8 32 32 H 1.08999 * 109.46623 * 55.00351 * 12 9 8 33 33 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4538 0.7252 -0.0005 5 6 3.6024 -0.6069 0.0043 6 6 2.3539 -1.1321 -0.0006 7 6 1.9589 -2.5864 -0.0001 8 7 1.5973 -2.9961 -1.3637 9 6 1.2064 -4.4116 -1.4019 10 1 0.6855 -4.6698 -0.4799 11 6 2.4567 -5.2824 -1.5422 12 6 0.2802 -4.6529 -2.5956 13 6 -1.0040 -3.8898 -2.3972 14 1 -1.1457 -3.2929 -1.5084 15 6 -1.9987 -3.9547 -3.3499 16 7 -1.8287 -4.6867 -4.4291 17 14 -3.5909 -3.0094 -3.1035 18 1 -3.2934 -1.5587 -2.9937 19 1 -4.4898 -3.2435 -4.2622 20 1 -4.2551 -3.4742 -1.8593 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.5338 -1.1536 0.0093 25 1 1.1045 -2.7307 0.6612 26 1 2.7958 -3.1901 0.3508 27 1 2.3512 -2.8120 -2.0085 28 1 2.1666 -6.3327 -1.5711 29 1 2.9776 -5.0242 -2.4643 30 1 3.1165 -5.1105 -0.6918 31 1 0.0615 -5.7176 -2.6763 32 1 0.7682 -4.3119 -3.5087 33 1 -1.0020 -5.1778 -4.5569 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:38 Heat of formation + Delta-G solvation = 22.476101 kcal Electronic energy + Delta-G solvation = -15379.217084 eV Core-core repulsion = 12827.819561 eV Total energy + Delta-G solvation = -2551.397524 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.87949 -38.61254 -36.13136 -34.92745 -33.36288 -31.20514 -29.54857 -28.75937 -26.54015 -24.88517 -22.40789 -22.13268 -21.64333 -18.90803 -18.55115 -18.28922 -16.46245 -16.13004 -15.67463 -15.42496 -15.15764 -14.81318 -14.21191 -14.03610 -13.70703 -13.60135 -13.31792 -13.26718 -12.94785 -12.66676 -12.48510 -12.13075 -11.99980 -11.92130 -11.42601 -10.76328 -10.56823 -10.45983 -10.39763 -9.05086 -8.52604 -6.17900 0.60568 1.23610 1.54377 1.63305 1.80947 2.44142 2.64009 3.21069 3.29828 3.54223 3.70271 3.97358 4.15421 4.20946 4.42293 4.51060 4.60507 4.62143 4.66196 4.72932 4.86299 4.95178 5.04865 5.15574 5.18045 5.26800 5.30374 5.50596 6.16474 6.33080 6.39423 6.62778 6.78525 7.37164 7.59319 8.88419 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.008173 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.977603 B = 3424.990850 C = 4317.595805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 N -0.402 5.402 4 O 0.090 5.910 5 C -0.037 4.037 6 C -0.208 4.208 7 C 0.144 3.856 8 N -0.679 5.679 9 C 0.107 3.893 10 H 0.063 0.937 11 C -0.171 4.171 12 C 0.020 3.980 13 C -0.572 4.572 14 H 0.052 0.948 15 C -0.049 4.049 16 N -0.953 5.953 17 Si 1.110 2.890 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.269 1.269 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.336 0.664 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.073 0.927 31 H -0.013 1.013 32 H -0.017 1.017 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 5.170 11.359 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 N -0.110 5.110 4 O 0.028 5.972 5 C -0.119 4.119 6 C -0.213 4.213 7 C 0.015 3.985 8 N -0.310 5.310 9 C -0.002 4.002 10 H 0.081 0.919 11 C -0.230 4.230 12 C -0.017 4.017 13 C -0.610 4.610 14 H 0.070 0.930 15 C -0.245 4.245 16 N -0.593 5.593 17 Si 0.933 3.067 18 H -0.199 1.199 19 H -0.216 1.216 20 H -0.194 1.194 21 H 0.110 0.890 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.276 0.724 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.005 0.995 32 H 0.002 0.998 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.983 7.053 10.753 15.686 hybrid contribution 2.144 -1.798 0.288 2.813 sum 11.127 5.255 11.041 16.533 Atomic orbital electron populations 1.20186 0.85881 1.03766 1.03667 1.23812 0.99674 0.88897 1.01383 1.73812 0.90148 1.24978 1.22034 1.84746 1.20916 1.24148 1.67438 1.26532 1.01471 0.82782 1.01105 1.21378 0.92733 0.97455 1.09721 1.20068 0.99947 0.87507 0.90978 1.60311 1.44116 1.19821 1.06720 1.21315 0.94400 0.86228 0.98291 0.91912 1.22435 0.98120 1.00509 1.01903 1.19183 0.94865 0.93914 0.93784 1.22296 1.01557 1.29820 1.07323 0.92980 1.27200 1.06330 0.97952 0.92977 1.70921 1.28337 1.30954 1.29050 0.83022 0.72123 0.75467 0.76135 1.19869 1.21627 1.19406 0.88970 0.91024 0.90397 0.72425 0.90956 0.91784 0.84566 0.92648 0.92932 0.90779 0.99468 0.99835 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.30 10.39 71.24 0.74 -1.56 16 2 C 0.02 0.64 7.33 43.58 0.32 0.96 16 3 N -0.40 -12.46 12.07 -49.57 -0.60 -13.05 16 4 O 0.09 2.31 11.20 71.67 0.80 3.11 16 5 C -0.04 -0.73 12.26 67.18 0.82 0.09 16 6 C -0.21 -5.44 5.84 -19.74 -0.12 -5.55 16 7 C 0.14 3.80 5.97 85.56 0.51 4.31 16 8 N -0.68 -23.12 5.95 -495.56 -2.95 -26.07 16 9 C 0.11 4.01 2.53 44.92 0.11 4.12 16 10 H 0.06 2.39 7.80 -2.39 -0.02 2.37 16 11 C -0.17 -4.94 9.16 71.98 0.66 -4.28 16 12 C 0.02 1.01 3.96 29.85 0.12 1.13 16 13 C -0.57 -32.20 8.84 25.60 0.23 -31.97 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 15 C -0.05 -2.90 5.46 84.66 0.46 -2.43 16 16 N -0.95 -60.36 13.65 21.45 0.29 -60.07 16 17 Si 1.11 51.76 29.90 68.60 2.05 53.81 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 22 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 23 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.26 2.27 8.06 -2.91 -0.02 2.24 16 25 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 26 H 0.06 1.31 7.43 -2.39 -0.02 1.29 16 27 H 0.34 10.81 8.46 -89.70 -0.76 10.05 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.07 1.66 7.45 -2.39 -0.02 1.64 16 31 H -0.01 -0.69 8.00 -2.39 -0.02 -0.71 16 32 H -0.02 -0.91 8.01 -2.39 -0.02 -0.93 16 33 H 0.25 16.11 7.22 -92.71 -0.67 15.44 16 Total: -1.00 -70.08 284.79 3.89 -66.18 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.44 Total: 11.28 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.86 Total: -35.19 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.26 Total: -99.20 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.80 Total: 3.11 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -70.08 3.89 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.656 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds