Wall clock time and date at job start Mon Mar 30 2020 03:34:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.35455 * 126.77176 * 2 1
4 4 C 1.41379 * 103.98172 * 180.09698 * 3 2 1
5 5 C 1.50704 * 126.80238 * 179.89281 * 4 3 2
6 6 N 1.46895 * 109.47165 * 94.70752 * 5 4 3
7 7 C 1.46904 * 110.99693 * 180.02562 * 6 5 4
8 8 H 1.08999 * 109.47046 * 35.00180 * 7 6 5
9 9 C 1.52999 * 109.47024 * 275.00073 * 7 6 5
10 10 C 1.52999 * 109.46953 * 154.99991 * 7 6 5
11 11 C 1.50702 * 109.47522 * 295.00224 * 10 7 6
12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 7
13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 7
14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10
15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10
16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11
17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11
18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11
19 19 N 1.30178 * 106.39859 * 359.62763 * 4 3 2
20 20 O 1.20921 * 111.59893 * 0.24082 * 19 4 3
21 21 H 1.09003 * 109.47253 * 180.29801 * 1 2 3
22 22 H 1.08997 * 109.47274 * 300.30117 * 1 2 3
23 23 H 1.09009 * 109.47300 * 60.30024 * 1 2 3
24 24 H 1.07999 * 128.01396 * 359.96639 * 3 2 1
25 25 H 1.08999 * 109.46881 * 334.70713 * 5 4 3
26 26 H 1.09005 * 109.47168 * 214.71161 * 5 4 3
27 27 H 1.00896 * 111.00318 * 303.95565 * 6 5 4
28 28 H 1.08999 * 109.47296 * 299.99953 * 9 7 6
29 29 H 1.08994 * 109.47531 * 60.00488 * 9 7 6
30 30 H 1.09007 * 109.46949 * 180.02562 * 9 7 6
31 31 H 1.09000 * 109.47527 * 174.99823 * 10 7 6
32 32 H 1.09001 * 109.47054 * 54.99913 * 10 7 6
33 33 H 0.96999 * 120.00128 * 180.27192 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3179 1.0850 0.0000
4 6 3.6213 0.5374 -0.0023
5 6 4.9210 1.3002 -0.0056
6 7 5.4037 1.4510 1.3736
7 6 6.6716 2.1921 1.4094
8 1 6.6703 2.9523 0.6284
9 6 7.8343 1.2249 1.1778
10 6 6.8312 2.8638 2.7748
11 6 5.7559 3.9048 2.9513
12 1 5.0313 4.0708 2.1678
13 6 5.6977 4.6457 4.1126
14 7 4.7625 5.5579 4.2643
15 14 6.9513 4.3590 5.4674
16 1 6.4412 3.3244 6.4027
17 1 8.2300 3.8983 4.8692
18 1 7.1791 5.6261 6.2074
19 7 3.4764 -0.7563 0.0047
20 8 2.3095 -1.0735 0.0061
21 1 -0.3634 -1.0277 0.0053
22 1 -0.3634 0.5185 0.8872
23 1 -0.3634 0.5092 -0.8927
24 1 2.0344 2.1272 -0.0005
25 1 4.7631 2.2851 -0.4450
26 1 5.6608 0.7551 -0.5919
27 1 4.7084 1.8963 1.9534
28 1 7.8357 0.4646 1.9589
29 1 7.7207 0.7464 0.2052
30 1 8.7752 1.7747 1.2049
31 1 7.8103 3.3393 2.8336
32 1 6.7436 2.1141 3.5611
33 1 4.7239 6.0820 5.0796
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695858918.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:24
Heat of formation + Delta-G solvation = 46.633592 kcal
Electronic energy + Delta-G solvation = -15094.564199 eV
Core-core repulsion = 12544.214223 eV
Total energy + Delta-G solvation = -2550.349976 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-44.70241 -36.98943 -34.30034 -33.30285 -32.45073 -30.38620 -27.90100 -27.71072
-25.49913 -22.86185 -22.42890 -19.89139 -19.40083 -17.41887 -16.98804 -16.83859
-15.28902 -14.78453 -14.29278 -14.11814 -13.69745 -13.32471 -13.26279 -12.64648
-12.52851 -12.33598 -11.91929 -11.82755 -11.60077 -11.17135 -10.96158 -10.74225
-10.34192 -9.98967 -9.79791 -9.47812 -9.25713 -9.14018 -8.58519 -7.79086
-6.10198 -4.08779 1.64551 2.43867 3.27252 3.29924 3.37116 3.41314
4.41002 4.42003 4.56970 4.97183 5.15734 5.27605 5.30588 5.33182
5.44932 5.66056 5.71244 5.77924 5.93371 6.04673 6.06008 6.17520
6.25560 6.41003 6.68411 6.77627 7.14045 7.24715 7.72040 7.80624
8.13540 8.44058 8.51590 8.90832 9.52710 11.02709
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.029103 B = 0.006649 C = 0.005751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 961.875493 B = 4209.877146 C = 4867.227904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.044 4.044
3 C -0.226 4.226
4 C 0.032 3.968
5 C 0.135 3.865
6 N -0.677 5.677
7 C 0.097 3.903
8 H 0.038 0.962
9 C -0.139 4.139
10 C -0.017 4.017
11 C -0.525 4.525
12 H 0.069 0.931
13 C 0.069 3.931
14 N -0.902 5.902
15 Si 0.882 3.118
16 H -0.277 1.277
17 H -0.265 1.265
18 H -0.289 1.289
19 N -0.354 5.354
20 O 0.094 5.906
21 H 0.079 0.921
22 H 0.089 0.911
23 H 0.087 0.913
24 H 0.170 0.830
25 H 0.050 0.950
26 H 0.080 0.920
27 H 0.360 0.640
28 H 0.055 0.945
29 H 0.041 0.959
30 H 0.050 0.950
31 H 0.023 0.977
32 H 0.022 0.978
33 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.537 -8.943 -8.745 13.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.108 4.108
3 C -0.248 4.248
4 C -0.127 4.127
5 C 0.005 3.995
6 N -0.313 5.313
7 C -0.012 4.012
8 H 0.056 0.944
9 C -0.197 4.197
10 C -0.055 4.055
11 C -0.563 4.563
12 H 0.087 0.913
13 C -0.132 4.132
14 N -0.540 5.540
15 Si 0.709 3.291
16 H -0.202 1.202
17 H -0.190 1.190
18 H -0.215 1.215
19 N -0.058 5.058
20 O 0.027 5.973
21 H 0.098 0.902
22 H 0.108 0.892
23 H 0.105 0.895
24 H 0.188 0.812
25 H 0.068 0.932
26 H 0.098 0.902
27 H 0.182 0.818
28 H 0.074 0.926
29 H 0.060 0.940
30 H 0.069 0.931
31 H 0.042 0.958
32 H 0.040 0.960
33 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -4.440 -10.445 -8.599 14.239
hybrid contribution -0.101 1.741 0.649 1.861
sum -4.541 -8.704 -7.950 12.633
Atomic orbital electron populations
1.20290 0.84299 1.04275 1.03994 1.24425 0.96253 0.86384 1.03707
1.22496 0.91617 1.01114 1.09536 1.23563 0.97205 0.89875 1.02064
1.20215 0.89495 0.96515 0.93276 1.60580 1.07183 1.56188 1.07372
1.21423 0.88032 0.92437 0.99326 0.94403 1.21839 0.97581 0.99621
1.00655 1.19778 0.97677 0.95714 0.92313 1.21069 1.13391 1.18541
1.03255 0.91289 1.25001 0.95341 0.94635 0.98251 1.69913 1.33550
1.23201 1.27354 0.86747 0.82637 0.77536 0.82184 1.20234 1.18981
1.21472 1.73821 0.96338 1.16614 1.19053 1.84811 1.11521 1.33266
1.67666 0.90183 0.89221 0.89459 0.81235 0.93221 0.90154 0.81833
0.92581 0.94036 0.93117 0.95848 0.96015 0.92708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.56 10.45 36.01 0.38 -0.18 16
2 C -0.04 -0.56 7.49 -35.30 -0.26 -0.83 16
3 C -0.23 -3.27 11.06 -39.38 -0.44 -3.70 16
4 C 0.03 0.54 6.84 -82.10 -0.56 -0.02 16
5 C 0.14 2.31 6.07 -4.98 -0.03 2.28 16
6 N -0.68 -13.45 6.30 -107.99 -0.68 -14.13 16
7 C 0.10 1.97 2.59 -67.71 -0.18 1.79 16
8 H 0.04 0.78 7.80 -51.93 -0.40 0.37 16
9 C -0.14 -2.42 9.41 37.16 0.35 -2.07 16
10 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16
11 C -0.52 -14.46 8.67 -34.44 -0.30 -14.75 16
12 H 0.07 2.02 7.73 -52.49 -0.41 1.61 16
13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16
14 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16
15 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16
16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16
18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
19 N -0.35 -6.18 12.07 33.42 0.40 -5.77 16
20 O 0.09 1.43 11.20 17.20 0.19 1.63 16
21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
22 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16
23 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16
24 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16
25 H 0.05 0.81 8.05 -51.93 -0.42 0.40 16
26 H 0.08 1.31 7.44 -51.93 -0.39 0.93 16
27 H 0.36 7.87 7.20 -39.29 -0.28 7.59 16
28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
29 H 0.04 0.65 7.45 -51.93 -0.39 0.27 16
30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16
32 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16
33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
LS Contribution 280.96 15.07 4.23 4.23
Total: -1.00 -31.01 280.96 -5.74 -36.75
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: -4.76 Total: 2.83 kcal
Atomic # 6 Polarization: -14.86 SS G_CDS: -1.24 Total: -16.10 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: 0.50 Total: -46.36 kcal
Atomic # 8 Polarization: 1.43 SS G_CDS: 0.19 Total: 1.63 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -31.01 -5.74 -36.75 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695858918.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.389 kcal
(2) G-P(sol) polarization free energy of solvation -31.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.634 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds