Wall clock time and date at job start Mon Mar 30 2020 03:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35455 * 126.77176 * 2 1 4 4 C 1.41379 * 103.98172 * 180.09698 * 3 2 1 5 5 C 1.50704 * 126.80238 * 179.89281 * 4 3 2 6 6 N 1.46895 * 109.47165 * 94.70752 * 5 4 3 7 7 C 1.46904 * 110.99693 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47046 * 35.00180 * 7 6 5 9 9 C 1.52999 * 109.47024 * 275.00073 * 7 6 5 10 10 C 1.52999 * 109.46953 * 154.99991 * 7 6 5 11 11 C 1.50702 * 109.47522 * 295.00224 * 10 7 6 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 N 1.30178 * 106.39859 * 359.62763 * 4 3 2 20 20 O 1.20921 * 111.59893 * 0.24082 * 19 4 3 21 21 H 1.09003 * 109.47253 * 180.29801 * 1 2 3 22 22 H 1.08997 * 109.47274 * 300.30117 * 1 2 3 23 23 H 1.09009 * 109.47300 * 60.30024 * 1 2 3 24 24 H 1.07999 * 128.01396 * 359.96639 * 3 2 1 25 25 H 1.08999 * 109.46881 * 334.70713 * 5 4 3 26 26 H 1.09005 * 109.47168 * 214.71161 * 5 4 3 27 27 H 1.00896 * 111.00318 * 303.95565 * 6 5 4 28 28 H 1.08999 * 109.47296 * 299.99953 * 9 7 6 29 29 H 1.08994 * 109.47531 * 60.00488 * 9 7 6 30 30 H 1.09007 * 109.46949 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47527 * 174.99823 * 10 7 6 32 32 H 1.09001 * 109.47054 * 54.99913 * 10 7 6 33 33 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0023 5 6 4.9210 1.3002 -0.0056 6 7 5.4037 1.4510 1.3736 7 6 6.6716 2.1921 1.4094 8 1 6.6703 2.9523 0.6284 9 6 7.8343 1.2249 1.1778 10 6 6.8312 2.8638 2.7748 11 6 5.7559 3.9048 2.9513 12 1 5.0313 4.0708 2.1678 13 6 5.6977 4.6457 4.1126 14 7 4.7625 5.5579 4.2643 15 14 6.9513 4.3590 5.4674 16 1 6.4412 3.3244 6.4027 17 1 8.2300 3.8983 4.8692 18 1 7.1791 5.6261 6.2074 19 7 3.4764 -0.7563 0.0047 20 8 2.3095 -1.0735 0.0061 21 1 -0.3634 -1.0277 0.0053 22 1 -0.3634 0.5185 0.8872 23 1 -0.3634 0.5092 -0.8927 24 1 2.0344 2.1272 -0.0005 25 1 4.7631 2.2851 -0.4450 26 1 5.6608 0.7551 -0.5919 27 1 4.7084 1.8963 1.9534 28 1 7.8357 0.4646 1.9589 29 1 7.7207 0.7464 0.2052 30 1 8.7752 1.7747 1.2049 31 1 7.8103 3.3393 2.8336 32 1 6.7436 2.1141 3.5611 33 1 4.7239 6.0820 5.0796 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695858918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:24 Heat of formation + Delta-G solvation = 46.633592 kcal Electronic energy + Delta-G solvation = -15094.564199 eV Core-core repulsion = 12544.214223 eV Total energy + Delta-G solvation = -2550.349976 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.70241 -36.98943 -34.30034 -33.30285 -32.45073 -30.38620 -27.90100 -27.71072 -25.49913 -22.86185 -22.42890 -19.89139 -19.40083 -17.41887 -16.98804 -16.83859 -15.28902 -14.78453 -14.29278 -14.11814 -13.69745 -13.32471 -13.26279 -12.64648 -12.52851 -12.33598 -11.91929 -11.82755 -11.60077 -11.17135 -10.96158 -10.74225 -10.34192 -9.98967 -9.79791 -9.47812 -9.25713 -9.14018 -8.58519 -7.79086 -6.10198 -4.08779 1.64551 2.43867 3.27252 3.29924 3.37116 3.41314 4.41002 4.42003 4.56970 4.97183 5.15734 5.27605 5.30588 5.33182 5.44932 5.66056 5.71244 5.77924 5.93371 6.04673 6.06008 6.17520 6.25560 6.41003 6.68411 6.77627 7.14045 7.24715 7.72040 7.80624 8.13540 8.44058 8.51590 8.90832 9.52710 11.02709 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.006649 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.875493 B = 4209.877146 C = 4867.227904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.044 4.044 3 C -0.226 4.226 4 C 0.032 3.968 5 C 0.135 3.865 6 N -0.677 5.677 7 C 0.097 3.903 8 H 0.038 0.962 9 C -0.139 4.139 10 C -0.017 4.017 11 C -0.525 4.525 12 H 0.069 0.931 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.265 1.265 18 H -0.289 1.289 19 N -0.354 5.354 20 O 0.094 5.906 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.170 0.830 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.360 0.640 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -8.943 -8.745 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C -0.248 4.248 4 C -0.127 4.127 5 C 0.005 3.995 6 N -0.313 5.313 7 C -0.012 4.012 8 H 0.056 0.944 9 C -0.197 4.197 10 C -0.055 4.055 11 C -0.563 4.563 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.540 5.540 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.190 1.190 18 H -0.215 1.215 19 N -0.058 5.058 20 O 0.027 5.973 21 H 0.098 0.902 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.188 0.812 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.182 0.818 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.440 -10.445 -8.599 14.239 hybrid contribution -0.101 1.741 0.649 1.861 sum -4.541 -8.704 -7.950 12.633 Atomic orbital electron populations 1.20290 0.84299 1.04275 1.03994 1.24425 0.96253 0.86384 1.03707 1.22496 0.91617 1.01114 1.09536 1.23563 0.97205 0.89875 1.02064 1.20215 0.89495 0.96515 0.93276 1.60580 1.07183 1.56188 1.07372 1.21423 0.88032 0.92437 0.99326 0.94403 1.21839 0.97581 0.99621 1.00655 1.19778 0.97677 0.95714 0.92313 1.21069 1.13391 1.18541 1.03255 0.91289 1.25001 0.95341 0.94635 0.98251 1.69913 1.33550 1.23201 1.27354 0.86747 0.82637 0.77536 0.82184 1.20234 1.18981 1.21472 1.73821 0.96338 1.16614 1.19053 1.84811 1.11521 1.33266 1.67666 0.90183 0.89221 0.89459 0.81235 0.93221 0.90154 0.81833 0.92581 0.94036 0.93117 0.95848 0.96015 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 36.01 0.38 -0.18 16 2 C -0.04 -0.56 7.49 -35.30 -0.26 -0.83 16 3 C -0.23 -3.27 11.06 -39.38 -0.44 -3.70 16 4 C 0.03 0.54 6.84 -82.10 -0.56 -0.02 16 5 C 0.14 2.31 6.07 -4.98 -0.03 2.28 16 6 N -0.68 -13.45 6.30 -107.99 -0.68 -14.13 16 7 C 0.10 1.97 2.59 -67.71 -0.18 1.79 16 8 H 0.04 0.78 7.80 -51.93 -0.40 0.37 16 9 C -0.14 -2.42 9.41 37.16 0.35 -2.07 16 10 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16 11 C -0.52 -14.46 8.67 -34.44 -0.30 -14.75 16 12 H 0.07 2.02 7.73 -52.49 -0.41 1.61 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 15 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 N -0.35 -6.18 12.07 33.42 0.40 -5.77 16 20 O 0.09 1.43 11.20 17.20 0.19 1.63 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 25 H 0.05 0.81 8.05 -51.93 -0.42 0.40 16 26 H 0.08 1.31 7.44 -51.93 -0.39 0.93 16 27 H 0.36 7.87 7.20 -39.29 -0.28 7.59 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.65 7.45 -51.93 -0.39 0.27 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 32 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -31.01 280.96 -5.74 -36.75 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.76 Total: 2.83 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -1.24 Total: -16.10 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.50 Total: -46.36 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.01 -5.74 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695858918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.389 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds