Wall clock time and date at job start Mon Mar 30 2020 03:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35455 * 126.77176 * 2 1 4 4 C 1.41379 * 103.98172 * 180.09698 * 3 2 1 5 5 C 1.50704 * 126.80238 * 179.89281 * 4 3 2 6 6 N 1.46895 * 109.47165 * 94.70752 * 5 4 3 7 7 C 1.46904 * 110.99693 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47046 * 35.00180 * 7 6 5 9 9 C 1.52999 * 109.47024 * 275.00073 * 7 6 5 10 10 C 1.52999 * 109.46953 * 154.99991 * 7 6 5 11 11 C 1.50702 * 109.47522 * 295.00224 * 10 7 6 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 N 1.30178 * 106.39859 * 359.62763 * 4 3 2 20 20 O 1.20921 * 111.59893 * 0.24082 * 19 4 3 21 21 H 1.09003 * 109.47253 * 180.29801 * 1 2 3 22 22 H 1.08997 * 109.47274 * 300.30117 * 1 2 3 23 23 H 1.09009 * 109.47300 * 60.30024 * 1 2 3 24 24 H 1.07999 * 128.01396 * 359.96639 * 3 2 1 25 25 H 1.08999 * 109.46881 * 334.70713 * 5 4 3 26 26 H 1.09005 * 109.47168 * 214.71161 * 5 4 3 27 27 H 1.00896 * 111.00318 * 303.95565 * 6 5 4 28 28 H 1.08999 * 109.47296 * 299.99953 * 9 7 6 29 29 H 1.08994 * 109.47531 * 60.00488 * 9 7 6 30 30 H 1.09007 * 109.46949 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47527 * 174.99823 * 10 7 6 32 32 H 1.09001 * 109.47054 * 54.99913 * 10 7 6 33 33 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0023 5 6 4.9210 1.3002 -0.0056 6 7 5.4037 1.4510 1.3736 7 6 6.6716 2.1921 1.4094 8 1 6.6703 2.9523 0.6284 9 6 7.8343 1.2249 1.1778 10 6 6.8312 2.8638 2.7748 11 6 5.7559 3.9048 2.9513 12 1 5.0313 4.0708 2.1678 13 6 5.6977 4.6457 4.1126 14 7 4.7625 5.5579 4.2643 15 14 6.9513 4.3590 5.4674 16 1 6.4412 3.3244 6.4027 17 1 8.2300 3.8983 4.8692 18 1 7.1791 5.6261 6.2074 19 7 3.4764 -0.7563 0.0047 20 8 2.3095 -1.0735 0.0061 21 1 -0.3634 -1.0277 0.0053 22 1 -0.3634 0.5185 0.8872 23 1 -0.3634 0.5092 -0.8927 24 1 2.0344 2.1272 -0.0005 25 1 4.7631 2.2851 -0.4450 26 1 5.6608 0.7551 -0.5919 27 1 4.7084 1.8963 1.9534 28 1 7.8357 0.4646 1.9589 29 1 7.7207 0.7464 0.2052 30 1 8.7752 1.7747 1.2049 31 1 7.8103 3.3393 2.8336 32 1 6.7436 2.1141 3.5611 33 1 4.7239 6.0820 5.0796 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695858918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:24 Heat of formation + Delta-G solvation = 25.555639 kcal Electronic energy + Delta-G solvation = -15095.478208 eV Core-core repulsion = 12544.214223 eV Total energy + Delta-G solvation = -2551.263985 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.90161 -38.56127 -35.69888 -34.60649 -34.17070 -31.97329 -29.69259 -28.60318 -26.92063 -24.54218 -23.87435 -21.24974 -20.89909 -18.97221 -18.63054 -18.14443 -16.82313 -16.46323 -16.08755 -15.38493 -14.90101 -14.53377 -14.47936 -13.95259 -13.88243 -13.62520 -13.55414 -13.35328 -13.09427 -12.63801 -12.55481 -12.25809 -11.90390 -11.78232 -11.43267 -11.32329 -11.04521 -10.76780 -10.22406 -9.35009 -8.29565 -6.32458 0.55161 1.21438 1.36555 1.37512 1.49002 2.27240 2.35959 3.04025 3.16852 3.40603 3.68080 4.14472 4.17676 4.28476 4.31592 4.51309 4.59159 4.64857 4.66248 4.75771 4.94102 4.96498 5.00513 5.08837 5.19809 5.26926 5.29674 5.45496 5.65587 6.18756 6.25971 6.44018 6.72799 7.32002 7.35381 8.86225 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.006649 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.875493 B = 4209.877146 C = 4867.227904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.026 4.026 3 C -0.248 4.248 4 C 0.013 3.987 5 C 0.139 3.861 6 N -0.683 5.683 7 C 0.099 3.901 8 H 0.032 0.968 9 C -0.131 4.131 10 C -0.013 4.013 11 C -0.524 4.524 12 H 0.037 0.963 13 C 0.010 3.990 14 N -0.946 5.946 15 Si 0.946 3.054 16 H -0.272 1.272 17 H -0.248 1.248 18 H -0.285 1.285 19 N -0.382 5.382 20 O 0.091 5.909 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.180 0.820 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.344 0.656 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 -9.952 -8.856 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 C -0.270 4.270 4 C -0.146 4.146 5 C 0.009 3.991 6 N -0.316 5.316 7 C -0.011 4.011 8 H 0.050 0.950 9 C -0.189 4.189 10 C -0.051 4.051 11 C -0.562 4.562 12 H 0.056 0.944 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.770 3.230 16 H -0.197 1.197 17 H -0.172 1.172 18 H -0.211 1.211 19 N -0.087 5.087 20 O 0.025 5.975 21 H 0.117 0.883 22 H 0.119 0.881 23 H 0.129 0.871 24 H 0.198 0.802 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.163 0.837 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.197 -11.475 -8.735 15.020 hybrid contribution -0.302 2.054 0.607 2.163 sum -4.499 -9.421 -8.128 13.231 Atomic orbital electron populations 1.20578 0.80511 1.06075 1.05594 1.25250 0.98035 0.84978 1.00656 1.22715 0.91100 1.02239 1.10965 1.23658 0.97875 0.90133 1.02888 1.20188 0.90185 0.96921 0.91785 1.60644 1.06705 1.55506 1.08780 1.21387 0.89500 0.93115 0.97068 0.94968 1.21760 0.96731 0.98930 1.01452 1.19721 0.96308 0.94687 0.94360 1.21331 1.13525 1.19107 1.02266 0.94438 1.25889 0.97413 0.94464 1.00951 1.70048 1.35700 1.24639 1.28321 0.85722 0.80658 0.77567 0.79062 1.19746 1.17157 1.21111 1.73796 0.97584 1.16944 1.20404 1.84764 1.11234 1.34068 1.67452 0.88327 0.88054 0.87122 0.80227 0.92895 0.89335 0.83658 0.92880 0.92398 0.91567 0.95347 0.96288 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.45 71.24 0.74 -0.15 16 2 C -0.03 -0.61 7.49 25.04 0.19 -0.43 16 3 C -0.25 -7.06 11.06 22.40 0.25 -6.81 16 4 C 0.01 0.44 6.84 43.58 0.30 0.73 16 5 C 0.14 4.74 6.07 85.56 0.52 5.26 16 6 N -0.68 -27.11 6.30 -495.57 -3.12 -30.24 16 7 C 0.10 3.92 2.59 44.91 0.12 4.04 16 8 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 9 C -0.13 -4.27 9.41 71.98 0.68 -3.59 16 10 C -0.01 -0.61 3.64 29.85 0.11 -0.50 16 11 C -0.52 -29.26 8.67 25.60 0.22 -29.04 16 12 H 0.04 2.27 7.73 -2.91 -0.02 2.25 16 13 C 0.01 0.58 5.47 84.65 0.46 1.05 16 14 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 15 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 N -0.38 -13.23 12.07 -49.56 -0.60 -13.83 16 20 O 0.09 2.69 11.20 71.71 0.80 3.50 16 21 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 25 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 26 H 0.09 2.83 7.44 -2.38 -0.02 2.82 16 27 H 0.34 15.41 7.20 -89.70 -0.65 14.77 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.69 7.45 -2.39 -0.02 1.68 16 30 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 32 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.92 280.96 3.25 -63.67 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.40 Total: 18.06 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.58 Total: -29.45 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -3.42 Total: -101.96 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.80 Total: 3.50 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -66.92 3.25 -63.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695858918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.230 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds