Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 H 1.09008 * 115.54724 * 330.71648 * 15 14 13 17 17 C 1.52998 * 117.49989 * 116.38868 * 15 14 13 18 18 C 1.52992 * 59.99871 * 107.49409 * 17 15 14 19 19 C 1.52993 * 138.59449 * 130.89607 * 18 17 15 20 20 C 1.52993 * 60.00035 * 130.89126 * 19 18 17 21 21 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 24 24 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 25 25 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 26 26 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 27 27 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 28 28 H 1.09001 * 117.49775 * 214.97274 * 17 15 14 29 29 H 1.08993 * 117.50218 * 0.02562 * 17 15 14 30 30 H 1.09000 * 117.50183 * 238.38486 * 19 18 17 31 31 H 1.09003 * 117.49621 * 23.39592 * 19 18 17 32 32 H 1.09002 * 117.49906 * 252.50801 * 20 19 18 33 33 H 1.09007 * 117.49984 * 107.49277 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 6 2.5228 -8.4068 0.0300 16 1 3.4743 -8.1836 -0.4528 17 6 2.5490 -9.3294 1.2502 18 6 1.9922 -9.8375 -0.0812 19 6 2.1459 -11.0500 -1.0014 20 6 0.7510 -10.5635 -0.6036 21 1 -0.4850 0.8400 -0.0004 22 1 0.3533 -2.3906 0.0005 23 1 0.6167 -4.9162 0.9030 24 1 0.6174 -4.9252 -0.8769 25 1 2.8331 -5.9162 -0.7633 26 1 0.8734 -7.3407 0.9158 27 1 0.8728 -7.3498 -0.8643 28 1 3.5176 -9.7137 1.5699 29 1 1.8359 -9.1274 2.0493 30 1 2.4698 -10.8665 -2.0259 31 1 2.5014 -11.9787 -0.5550 32 1 0.1886 -11.1722 0.1045 33 1 0.1570 -10.0599 -1.3664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700077443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = 18.568175 kcal Electronic energy + Delta-G solvation = -14481.824727 eV Core-core repulsion = 11930.257743 eV Total energy + Delta-G solvation = -2551.566984 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.73885 -38.09987 -35.27845 -33.83486 -32.46541 -31.18223 -27.80483 -25.03757 -23.24311 -22.57250 -21.08419 -19.42313 -18.81657 -17.83251 -16.11780 -15.53082 -15.27663 -15.08198 -14.76179 -14.28839 -13.97083 -13.54937 -13.20238 -12.70493 -12.06827 -11.74217 -11.66709 -11.48603 -11.40060 -11.24549 -11.03326 -10.32666 -10.21089 -10.09428 -10.00418 -9.85208 -9.49879 -8.42457 -8.00297 -7.92923 -6.39794 -3.80481 3.17958 3.28292 3.35789 3.50976 3.58372 3.93620 4.06822 4.20751 4.50295 4.76584 4.78760 5.17445 5.27209 5.37535 5.41819 5.43124 5.44976 5.55665 5.68002 5.71598 5.75878 5.84850 5.88653 5.94305 6.01931 6.23504 6.31134 7.27048 7.57434 7.71409 8.08990 8.63725 9.20140 9.56794 10.08387 10.78143 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.081143 B = 0.004054 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.986388 B = 6905.429137 C = 7080.550634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.090 3.910 15 C -0.089 4.089 16 H 0.109 0.891 17 C -0.119 4.119 18 C -0.234 4.234 19 C -0.133 4.133 20 C -0.132 4.132 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.349 0.651 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 -16.989 -0.980 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.300 5.300 14 C -0.039 4.039 15 C -0.108 4.108 16 H 0.127 0.873 17 C -0.156 4.156 18 C -0.235 4.235 19 C -0.169 4.169 20 C -0.169 4.169 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.104 0.896 24 H 0.061 0.939 25 H 0.168 0.832 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.294 -16.796 -0.300 16.802 hybrid contribution -0.632 0.809 -0.883 1.354 sum -0.926 -15.988 -1.183 16.058 Atomic orbital electron populations 1.69624 1.05943 1.28020 1.50810 1.25266 0.95641 0.99727 0.97387 0.85795 0.79723 0.81119 0.77678 1.19202 1.20789 1.20750 1.19766 0.93415 0.82240 1.47377 0.87861 1.41873 1.09202 1.04604 1.64470 1.19820 0.88390 0.84736 0.84362 1.90521 1.13770 1.87081 1.55303 1.21666 0.94375 0.90972 1.01177 1.60043 1.18841 0.99810 1.51296 1.21498 0.94290 0.87778 1.00366 1.22030 0.99846 0.87713 1.01167 0.87318 1.22785 1.01555 1.01169 0.90094 1.21590 1.04079 0.95843 1.01967 1.22627 0.99548 0.95910 0.98860 1.22600 0.90208 1.01710 1.02341 0.91950 0.77459 0.89603 0.93931 0.83176 0.90885 0.95283 0.88722 0.88531 0.88780 0.88814 0.88785 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.60 5.29 -10.96 -0.06 -14.65 16 10 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16 11 O -0.58 -16.22 15.78 5.55 0.09 -16.13 16 12 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 13 N -0.67 -11.37 6.12 -115.06 -0.70 -12.07 16 14 C 0.09 1.21 5.97 -3.83 -0.02 1.19 16 15 C -0.09 -1.09 5.95 -90.63 -0.54 -1.63 16 16 H 0.11 1.37 8.13 -51.92 -0.42 0.95 16 17 C -0.12 -1.31 10.18 -26.74 -0.27 -1.58 16 18 C -0.23 -2.52 5.39 -154.52 -0.83 -3.35 16 19 C -0.13 -1.19 10.53 -26.74 -0.28 -1.47 16 20 C -0.13 -1.21 10.53 -26.74 -0.28 -1.49 16 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 23 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.35 6.07 8.42 -39.29 -0.33 5.74 16 26 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -31.09 289.79 -7.99 -39.08 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -4.79 Total: 12.21 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.59 Total: -4.93 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.04 Total: -50.83 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.09 -7.99 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700077443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.646 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds