Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 H 1.09008 * 115.54724 * 330.71648 * 15 14 13 17 17 C 1.52998 * 117.49989 * 116.38868 * 15 14 13 18 18 C 1.52992 * 59.99871 * 107.49409 * 17 15 14 19 19 C 1.52993 * 138.59449 * 130.89607 * 18 17 15 20 20 C 1.52993 * 60.00035 * 130.89126 * 19 18 17 21 21 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 24 24 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 25 25 H 1.00900 * 111.00047 * 303.95165 * 13 12 10 26 26 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 27 27 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 28 28 H 1.09001 * 117.49775 * 214.97274 * 17 15 14 29 29 H 1.08993 * 117.50218 * 0.02562 * 17 15 14 30 30 H 1.09000 * 117.50183 * 238.38486 * 19 18 17 31 31 H 1.09003 * 117.49621 * 23.39592 * 19 18 17 32 32 H 1.09002 * 117.49906 * 252.50801 * 20 19 18 33 33 H 1.09007 * 117.49984 * 107.49277 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 6 2.5228 -8.4068 0.0300 16 1 3.4743 -8.1836 -0.4528 17 6 2.5490 -9.3294 1.2502 18 6 1.9922 -9.8375 -0.0812 19 6 2.1459 -11.0500 -1.0014 20 6 0.7510 -10.5635 -0.6036 21 1 -0.4850 0.8400 -0.0004 22 1 0.3533 -2.3906 0.0005 23 1 0.6167 -4.9162 0.9030 24 1 0.6174 -4.9252 -0.8769 25 1 2.8331 -5.9162 -0.7633 26 1 0.8734 -7.3407 0.9158 27 1 0.8728 -7.3498 -0.8643 28 1 3.5176 -9.7137 1.5699 29 1 1.8359 -9.1274 2.0493 30 1 2.4698 -10.8665 -2.0259 31 1 2.5014 -11.9787 -0.5550 32 1 0.1886 -11.1722 0.1045 33 1 0.1570 -10.0599 -1.3664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700077443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = -2.720925 kcal Electronic energy + Delta-G solvation = -14482.747892 eV Core-core repulsion = 11930.257743 eV Total energy + Delta-G solvation = -2552.490149 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21348 -39.40146 -36.62626 -35.80500 -33.47988 -33.19648 -29.25939 -26.80961 -24.70538 -23.27268 -22.04190 -21.12766 -20.03254 -19.68584 -17.83384 -16.98737 -16.50590 -16.28739 -15.86035 -15.81627 -15.48050 -15.20010 -14.54865 -14.27625 -13.51314 -13.39088 -13.18991 -12.86641 -12.41882 -12.40243 -12.27145 -12.21854 -12.11101 -11.52414 -10.91297 -10.79404 -10.72198 -10.35904 -10.02644 -9.32750 -8.47556 -5.96566 1.36650 1.42008 1.56547 2.03332 2.28557 2.62284 2.79648 3.01918 3.19546 3.37955 3.64678 3.87227 3.99297 4.27966 4.38656 4.46023 4.49104 4.59075 4.63867 4.73391 4.77251 4.83886 4.90886 4.97662 5.02457 5.27176 5.31056 5.40523 5.87740 6.09236 6.37334 6.59006 7.11521 7.54619 8.09924 8.70149 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.081143 B = 0.004054 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.986388 B = 6905.429137 C = 7080.550634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.682 5.682 14 C 0.097 3.903 15 C -0.106 4.106 16 H 0.099 0.901 17 C -0.119 4.119 18 C -0.245 4.245 19 C -0.127 4.127 20 C -0.127 4.127 21 H 0.278 0.722 22 H 0.397 0.603 23 H 0.104 0.896 24 H 0.067 0.933 25 H 0.344 0.656 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -17.727 -1.037 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.315 5.315 14 C -0.032 4.032 15 C -0.125 4.125 16 H 0.117 0.883 17 C -0.156 4.156 18 C -0.245 4.245 19 C -0.164 4.164 20 C -0.164 4.164 21 H 0.088 0.912 22 H 0.231 0.769 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.162 0.838 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.158 -17.557 -0.357 17.599 hybrid contribution -0.381 0.973 -0.873 1.361 sum -1.539 -16.584 -1.230 16.701 Atomic orbital electron populations 1.69680 1.06848 1.29296 1.50298 1.26062 0.96570 1.02455 0.96186 0.84851 0.78010 0.76967 0.78376 1.19802 1.19483 1.19552 1.19723 0.92728 0.84040 1.49972 0.90341 1.41934 1.09350 1.04690 1.64977 1.20865 0.88254 0.86184 0.82259 1.90488 1.15886 1.87969 1.56679 1.21530 0.94009 0.88084 1.03102 1.60054 1.19156 1.00888 1.51354 1.21498 0.94485 0.86263 1.00927 1.21921 0.99436 0.88326 1.02787 0.88329 1.22829 1.02065 1.00616 0.90093 1.21698 1.06043 0.95095 1.01678 1.22772 0.99351 0.95511 0.98752 1.22740 0.90145 1.01130 1.02348 0.91246 0.76920 0.87771 0.91557 0.83761 0.90384 0.94385 0.88167 0.88211 0.88376 0.87484 0.87534 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.29 29.55 68.60 2.03 45.31 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.95 5.29 -306.98 -1.62 -31.58 16 10 C 0.44 21.40 7.82 87.66 0.69 22.08 16 11 O -0.62 -35.58 15.78 -3.07 -0.05 -35.63 16 12 C 0.07 2.32 6.17 85.56 0.53 2.85 16 13 N -0.68 -22.80 6.12 -517.94 -3.17 -25.97 16 14 C 0.10 2.47 5.97 86.30 0.51 2.98 16 15 C -0.11 -2.50 5.95 -10.80 -0.06 -2.56 16 16 H 0.10 2.49 8.13 -2.38 -0.02 2.47 16 17 C -0.12 -2.46 10.18 30.59 0.31 -2.15 16 18 C -0.24 -4.82 5.39 -52.19 -0.28 -5.10 16 19 C -0.13 -1.99 10.53 30.59 0.32 -1.67 16 20 C -0.13 -2.01 10.53 30.59 0.32 -1.69 16 21 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 22 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 23 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.34 12.01 8.42 -89.69 -0.76 11.25 16 26 H 0.08 1.91 7.88 -2.38 -0.02 1.89 16 27 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 1.96 8.03 -2.39 -0.02 1.94 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.48 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -66.32 289.79 0.71 -65.60 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -0.37 Total: 36.04 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 3.62 Total: -4.03 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.51 Total: -107.30 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.05 Total: -35.63 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.32 0.71 -65.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700077443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.883 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds