Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48504 * 109.47257 * 270.00631 * 3 2 1 5 5 H 1.48501 * 109.46879 * 30.00306 * 3 2 1 6 6 H 1.48497 * 109.47099 * 150.00472 * 3 2 1 7 7 C 1.37878 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99770 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99814 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00087 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99604 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.46997 * 180.02562 * 13 11 10 15 15 C 1.46895 * 111.00247 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.34373 * 325.70246 * 15 14 13 17 17 C 1.51106 * 110.38568 * 87.98898 * 15 14 13 18 18 C 1.30798 * 110.94366 * 135.35900 * 17 15 14 19 19 C 1.51098 * 111.15292 * 359.95455 * 18 17 15 20 20 C 1.54630 * 104.72730 * 343.58981 * 19 18 17 21 21 H 0.96997 * 120.00061 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47113 * 60.01280 * 9 7 2 23 23 H 1.09001 * 109.47987 * 300.00371 * 9 7 2 24 24 H 0.97003 * 119.99874 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.47091 * 60.00675 * 13 11 10 26 26 H 1.08992 * 109.47308 * 300.00225 * 13 11 10 27 27 H 1.00900 * 111.00062 * 303.96097 * 14 13 11 28 28 H 1.08002 * 124.44711 * 315.32439 * 17 15 14 29 29 H 1.08007 * 124.39747 * 179.97438 * 18 17 15 30 30 H 1.09008 * 110.38603 * 224.78131 * 19 18 17 31 31 H 1.09000 * 110.38996 * 102.40912 * 19 18 17 32 32 H 1.09004 * 111.04043 * 266.60677 * 20 19 18 33 33 H 1.09001 * 111.07445 * 142.67960 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7332 -6.0288 -0.0005 14 7 1.9988 -7.3010 -0.0018 15 6 2.9232 -8.4426 -0.0019 16 1 3.8183 -8.2053 -0.5770 17 6 3.2921 -8.8213 1.4136 18 6 3.2443 -10.1180 1.5783 19 6 2.8352 -10.8150 0.3016 20 6 2.2290 -9.6980 -0.5792 21 1 -0.4850 0.8400 0.0004 22 1 0.6243 -2.5567 -0.8904 23 1 0.6247 -2.5572 0.8896 24 1 3.1568 -3.4353 -0.0002 25 1 3.3591 -5.9712 0.8901 26 1 3.3606 -5.9709 -0.8899 27 1 1.3614 -7.3514 0.7787 28 1 3.5599 -8.1145 2.1851 29 1 3.4677 -10.6239 2.5060 30 1 2.0886 -11.5815 0.5099 31 1 3.7051 -11.2539 -0.1870 32 1 1.1480 -9.6413 -0.4505 33 1 2.4889 -9.8414 -1.6280 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700588160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = -24.638480 kcal Electronic energy + Delta-G solvation = -14643.160972 eV Core-core repulsion = 12089.720407 eV Total energy + Delta-G solvation = -2553.440565 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32849 -38.39609 -34.41366 -33.89354 -32.29476 -29.17925 -28.49775 -26.84456 -24.54554 -22.25403 -20.81083 -19.63610 -19.08979 -17.31355 -16.28959 -15.93249 -15.33530 -15.08018 -14.97647 -14.37443 -13.60631 -13.45969 -12.86429 -12.27352 -12.24773 -11.98769 -11.92105 -11.66290 -11.44026 -11.38000 -11.18867 -10.96324 -10.86652 -10.30988 -9.38817 -9.31048 -8.99820 -8.72265 -8.28041 -7.84414 -6.15595 -4.22578 2.01986 3.24757 3.30689 3.33117 3.41778 3.88051 4.31308 4.43909 4.52849 4.69609 5.01128 5.12950 5.20348 5.28252 5.42707 5.44608 5.50485 5.61133 5.65630 5.76598 6.02875 6.08108 6.27568 6.61682 6.99150 7.33843 7.44471 7.47905 7.54088 7.68977 7.98593 8.65691 8.80261 9.14351 9.44214 10.94652 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.078912 B = 0.004188 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.738320 B = 6684.020704 C = 6850.129343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.039 3.961 14 N -0.662 5.662 15 C 0.107 3.893 16 H 0.087 0.913 17 C -0.202 4.202 18 C -0.156 4.156 19 C -0.104 4.104 20 C -0.112 4.112 21 H 0.266 0.734 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.353 0.647 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -17.154 1.348 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.094 4.094 14 N -0.293 5.293 15 C -0.003 4.003 16 H 0.105 0.895 17 C -0.222 4.222 18 C -0.176 4.176 19 C -0.141 4.141 20 C -0.150 4.150 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.222 0.778 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.173 0.827 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.802 -17.134 0.645 18.838 hybrid contribution 1.323 1.138 1.054 2.038 sum 9.125 -15.996 1.699 18.494 Atomic orbital electron populations 1.69977 1.06112 1.27290 1.48909 1.24960 0.94917 0.99458 0.94722 0.86412 0.79596 0.82649 0.78226 1.20446 1.21011 1.19768 1.21233 0.93254 0.90492 1.53185 0.91916 1.19091 0.88319 0.81943 0.97714 1.46451 1.11054 1.06131 1.72777 1.20383 0.89558 0.84252 0.77818 1.90661 1.16718 1.84722 1.50114 1.21885 0.95751 0.89600 1.02143 1.60289 1.18116 0.99641 1.51273 1.21535 0.94954 0.91353 0.92478 0.89476 1.24167 1.01648 0.97302 0.99076 1.23339 1.00128 0.95762 0.98321 1.21413 1.00414 0.98338 0.93962 1.22497 1.01105 0.92338 0.99041 0.92447 0.95519 0.95624 0.77809 0.92870 0.88650 0.82688 0.86035 0.86134 0.91142 0.90694 0.90128 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.71 -15.18 5.55 -61.47 -0.34 -15.52 16 11 C 0.50 10.03 7.87 -10.98 -0.09 9.94 16 12 O -0.54 -13.38 16.20 5.56 0.09 -13.29 16 13 C 0.04 0.56 6.00 -4.98 -0.03 0.53 16 14 N -0.66 -9.41 5.92 -108.09 -0.64 -10.05 16 15 C 0.11 1.19 3.21 -67.81 -0.22 0.97 16 16 H 0.09 0.91 7.84 -51.93 -0.41 0.51 16 17 C -0.20 -2.07 10.11 -35.77 -0.36 -2.43 16 18 C -0.16 -1.42 10.78 -35.78 -0.39 -1.81 16 19 C -0.10 -0.87 6.81 -26.83 -0.18 -1.05 16 20 C -0.11 -1.11 6.89 -25.01 -0.17 -1.29 16 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.35 5.33 8.17 -39.29 -0.32 5.01 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 285.01 15.07 4.30 4.30 Total: -1.00 -31.99 285.01 -7.58 -39.58 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.82 Total: 6.63 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.88 Total: -1.96 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.24 Total: -51.15 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.99 -7.58 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700588160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.937 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds