Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48504 * 109.47257 * 270.00631 * 3 2 1 5 5 H 1.48501 * 109.46879 * 30.00306 * 3 2 1 6 6 H 1.48497 * 109.47099 * 150.00472 * 3 2 1 7 7 C 1.37878 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99770 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99814 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00087 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99604 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.46997 * 180.02562 * 13 11 10 15 15 C 1.46895 * 111.00247 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.34373 * 325.70246 * 15 14 13 17 17 C 1.51106 * 110.38568 * 87.98898 * 15 14 13 18 18 C 1.30798 * 110.94366 * 135.35900 * 17 15 14 19 19 C 1.51098 * 111.15292 * 359.95455 * 18 17 15 20 20 C 1.54630 * 104.72730 * 343.58981 * 19 18 17 21 21 H 0.96997 * 120.00061 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47113 * 60.01280 * 9 7 2 23 23 H 1.09001 * 109.47987 * 300.00371 * 9 7 2 24 24 H 0.97003 * 119.99874 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.47091 * 60.00675 * 13 11 10 26 26 H 1.08992 * 109.47308 * 300.00225 * 13 11 10 27 27 H 1.00900 * 111.00062 * 303.96097 * 14 13 11 28 28 H 1.08002 * 124.44711 * 315.32439 * 17 15 14 29 29 H 1.08007 * 124.39747 * 179.97438 * 18 17 15 30 30 H 1.09008 * 110.38603 * 224.78131 * 19 18 17 31 31 H 1.09000 * 110.38996 * 102.40912 * 19 18 17 32 32 H 1.09004 * 111.04043 * 266.60677 * 20 19 18 33 33 H 1.09001 * 111.07445 * 142.67960 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7332 -6.0288 -0.0005 14 7 1.9988 -7.3010 -0.0018 15 6 2.9232 -8.4426 -0.0019 16 1 3.8183 -8.2053 -0.5770 17 6 3.2921 -8.8213 1.4136 18 6 3.2443 -10.1180 1.5783 19 6 2.8352 -10.8150 0.3016 20 6 2.2290 -9.6980 -0.5792 21 1 -0.4850 0.8400 0.0004 22 1 0.6243 -2.5567 -0.8904 23 1 0.6247 -2.5572 0.8896 24 1 3.1568 -3.4353 -0.0002 25 1 3.3591 -5.9712 0.8901 26 1 3.3606 -5.9709 -0.8899 27 1 1.3614 -7.3514 0.7787 28 1 3.5599 -8.1145 2.1851 29 1 3.4677 -10.6239 2.5060 30 1 2.0886 -11.5815 0.5099 31 1 3.7051 -11.2539 -0.1870 32 1 1.1480 -9.6413 -0.4505 33 1 2.4889 -9.8414 -1.6280 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700588160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = -48.753272 kcal Electronic energy + Delta-G solvation = -14644.206668 eV Core-core repulsion = 12089.720407 eV Total energy + Delta-G solvation = -2554.486261 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.64721 -39.59972 -36.18849 -35.18754 -34.33030 -30.20877 -29.78457 -28.34714 -25.84267 -24.15067 -21.68115 -21.30252 -19.85707 -18.99116 -17.73578 -17.28742 -16.88118 -16.47197 -16.31129 -15.93393 -15.11901 -14.56738 -14.46343 -14.03370 -13.84274 -13.18015 -12.99150 -12.89662 -12.75119 -12.69063 -12.36332 -12.22709 -12.15730 -11.97502 -11.48946 -10.80502 -10.72893 -10.06067 -9.82442 -9.27849 -8.29228 -6.46165 1.29382 1.43268 1.45908 1.57107 1.78404 2.30180 2.51933 3.05567 3.32472 3.78563 3.83225 3.97777 4.20174 4.34643 4.45690 4.48453 4.58343 4.70242 4.93385 5.03202 5.10762 5.23833 5.26281 5.32540 5.48768 5.57210 5.68856 5.84703 5.87663 6.03933 6.34804 6.65212 6.93929 7.23478 7.51731 8.83114 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.078912 B = 0.004188 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.738320 B = 6684.020704 C = 6850.129343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.594 6.594 13 C 0.056 3.944 14 N -0.680 5.680 15 C 0.107 3.893 16 H 0.097 0.903 17 C -0.221 4.221 18 C -0.148 4.148 19 C -0.101 4.101 20 C -0.115 4.115 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.014 1.014 24 H 0.409 0.591 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.344 0.656 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.687 -17.700 1.455 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.475 6.475 13 C -0.076 4.076 14 N -0.311 5.311 15 C -0.002 4.002 16 H 0.115 0.885 17 C -0.241 4.241 18 C -0.167 4.167 19 C -0.138 4.138 20 C -0.153 4.153 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.004 0.996 24 H 0.244 0.756 25 H 0.101 0.899 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.597 -17.719 0.749 20.660 hybrid contribution 0.422 1.201 1.016 1.629 sum 11.019 -16.519 1.765 19.935 Atomic orbital electron populations 1.70143 1.08335 1.28583 1.49987 1.26098 0.95786 1.04005 0.93839 0.85133 0.78481 0.76841 0.78608 1.19592 1.20985 1.17821 1.21631 0.94346 0.90555 1.52881 0.89711 1.18530 0.88754 0.84451 0.93973 1.46184 1.11179 1.05509 1.73064 1.21479 0.89968 0.84988 0.75690 1.90637 1.19438 1.85427 1.51963 1.21804 0.94067 0.87107 1.04625 1.60321 1.19132 1.00394 1.51211 1.21630 0.94694 0.90415 0.93503 0.88507 1.24125 1.03378 0.97923 0.98636 1.23603 0.98424 0.95531 0.99132 1.21436 1.01163 0.97869 0.93336 1.22520 1.00162 0.92657 0.99930 0.92245 0.99660 0.99559 0.75558 0.89946 0.86107 0.83683 0.85964 0.84533 0.90216 0.89063 0.91756 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.45 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.56 -30.51 9.28 25.60 0.24 -30.27 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.85 5.43 85.63 0.46 15.32 16 10 N -0.71 -30.21 5.55 -466.78 -2.59 -32.80 16 11 C 0.49 19.99 7.87 87.66 0.69 20.68 16 12 O -0.59 -30.31 16.20 -3.02 -0.05 -30.36 16 13 C 0.06 1.52 6.00 85.56 0.51 2.03 16 14 N -0.68 -18.71 5.92 -495.90 -2.94 -21.65 16 15 C 0.11 2.17 3.21 44.86 0.14 2.32 16 16 H 0.10 1.77 7.84 -2.39 -0.02 1.75 16 17 C -0.22 -4.09 10.11 25.98 0.26 -3.82 16 18 C -0.15 -2.32 10.78 25.98 0.28 -2.04 16 19 C -0.10 -1.43 6.81 30.53 0.21 -1.22 16 20 C -0.11 -2.11 6.89 31.71 0.22 -1.89 16 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 24 H 0.41 14.15 8.32 -92.71 -0.77 13.38 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.12 2.72 8.07 -2.39 -0.02 2.70 16 27 H 0.34 10.42 8.17 -89.69 -0.73 9.69 16 28 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -71.68 285.01 -0.18 -71.86 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.40 Total: 23.34 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 3.48 Total: 1.68 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -5.24 Total: -110.99 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.68 -0.18 -71.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700588160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.109 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds