Wall clock time and date at job start Mon Mar 30 2020 03:09:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86799 * 120.00058 * 2 1
4 4 H 1.48504 * 109.47257 * 270.00631 * 3 2 1
5 5 H 1.48501 * 109.46879 * 30.00306 * 3 2 1
6 6 H 1.48497 * 109.47099 * 150.00472 * 3 2 1
7 7 C 1.37878 * 120.00208 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99944 * 180.02562 * 7 2 1
9 9 C 1.50697 * 119.99770 * 359.97438 * 7 2 1
10 10 N 1.46504 * 109.46937 * 180.02562 * 9 7 2
11 11 C 1.34784 * 119.99814 * 180.02562 * 10 9 7
12 12 O 1.21277 * 120.00087 * 0.02562 * 11 10 9
13 13 C 1.50702 * 119.99604 * 180.02562 * 11 10 9
14 14 N 1.46899 * 109.46997 * 180.02562 * 13 11 10
15 15 C 1.46895 * 111.00247 * 179.97438 * 14 13 11
16 16 H 1.09002 * 110.34373 * 325.70246 * 15 14 13
17 17 C 1.51106 * 110.38568 * 87.98898 * 15 14 13
18 18 C 1.30798 * 110.94366 * 135.35900 * 17 15 14
19 19 C 1.51098 * 111.15292 * 359.95455 * 18 17 15
20 20 C 1.54630 * 104.72730 * 343.58981 * 19 18 17
21 21 H 0.96997 * 120.00061 * 359.97438 * 1 2 3
22 22 H 1.08998 * 109.47113 * 60.01280 * 9 7 2
23 23 H 1.09001 * 109.47987 * 300.00371 * 9 7 2
24 24 H 0.97003 * 119.99874 * 0.02562 * 10 9 7
25 25 H 1.09001 * 109.47091 * 60.00675 * 13 11 10
26 26 H 1.08992 * 109.47308 * 300.00225 * 13 11 10
27 27 H 1.00900 * 111.00062 * 303.96097 * 14 13 11
28 28 H 1.08002 * 124.44711 * 315.32439 * 17 15 14
29 29 H 1.08007 * 124.39747 * 179.97438 * 18 17 15
30 30 H 1.09008 * 110.38603 * 224.78131 * 19 18 17
31 31 H 1.09000 * 110.38996 * 102.40912 * 19 18 17
32 32 H 1.09004 * 111.04043 * 266.60677 * 20 19 18
33 33 H 1.09001 * 111.07445 * 142.67960 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 7 2.2031 -3.6126 -0.0005
11 6 1.7539 -4.8834 -0.0011
12 8 0.5615 -5.1050 -0.0020
13 6 2.7332 -6.0288 -0.0005
14 7 1.9988 -7.3010 -0.0018
15 6 2.9232 -8.4426 -0.0019
16 1 3.8183 -8.2053 -0.5770
17 6 3.2921 -8.8213 1.4136
18 6 3.2443 -10.1180 1.5783
19 6 2.8352 -10.8150 0.3016
20 6 2.2290 -9.6980 -0.5792
21 1 -0.4850 0.8400 0.0004
22 1 0.6243 -2.5567 -0.8904
23 1 0.6247 -2.5572 0.8896
24 1 3.1568 -3.4353 -0.0002
25 1 3.3591 -5.9712 0.8901
26 1 3.3606 -5.9709 -0.8899
27 1 1.3614 -7.3514 0.7787
28 1 3.5599 -8.1145 2.1851
29 1 3.4677 -10.6239 2.5060
30 1 2.0886 -11.5815 0.5099
31 1 3.7051 -11.2539 -0.1870
32 1 1.1480 -9.6413 -0.4505
33 1 2.4889 -9.8414 -1.6280
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000700588160.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:37
Heat of formation + Delta-G solvation = -48.753272 kcal
Electronic energy + Delta-G solvation = -14644.206668 eV
Core-core repulsion = 12089.720407 eV
Total energy + Delta-G solvation = -2554.486261 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.64721 -39.59972 -36.18849 -35.18754 -34.33030 -30.20877 -29.78457 -28.34714
-25.84267 -24.15067 -21.68115 -21.30252 -19.85707 -18.99116 -17.73578 -17.28742
-16.88118 -16.47197 -16.31129 -15.93393 -15.11901 -14.56738 -14.46343 -14.03370
-13.84274 -13.18015 -12.99150 -12.89662 -12.75119 -12.69063 -12.36332 -12.22709
-12.15730 -11.97502 -11.48946 -10.80502 -10.72893 -10.06067 -9.82442 -9.27849
-8.29228 -6.46165 1.29382 1.43268 1.45908 1.57107 1.78404 2.30180
2.51933 3.05567 3.32472 3.78563 3.83225 3.97777 4.20174 4.34643
4.45690 4.48453 4.58343 4.70242 4.93385 5.03202 5.10762 5.23833
5.26281 5.32540 5.48768 5.57210 5.68856 5.84703 5.87663 6.03933
6.34804 6.65212 6.93929 7.23478 7.51731 8.83114
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.078912 B = 0.004188 C = 0.004087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 354.738320 B = 6684.020704 C = 6850.129343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.002 3.998
3 Si 0.986 3.014
4 H -0.271 1.271
5 H -0.284 1.284
6 H -0.255 1.255
7 C -0.556 4.556
8 H 0.085 0.915
9 C 0.266 3.734
10 N -0.709 5.709
11 C 0.492 3.508
12 O -0.594 6.594
13 C 0.056 3.944
14 N -0.680 5.680
15 C 0.107 3.893
16 H 0.097 0.903
17 C -0.221 4.221
18 C -0.148 4.148
19 C -0.101 4.101
20 C -0.115 4.115
21 H 0.269 0.731
22 H -0.015 1.015
23 H -0.014 1.014
24 H 0.409 0.591
25 H 0.083 0.917
26 H 0.121 0.879
27 H 0.344 0.656
28 H 0.122 0.878
29 H 0.137 0.863
30 H 0.079 0.921
31 H 0.091 0.909
32 H 0.064 0.936
33 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.687 -17.700 1.455 21.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.197 4.197
3 Si 0.809 3.191
4 H -0.196 1.196
5 H -0.210 1.210
6 H -0.178 1.178
7 C -0.594 4.594
8 H 0.103 0.897
9 C 0.143 3.857
10 N -0.359 5.359
11 C 0.279 3.721
12 O -0.475 6.475
13 C -0.076 4.076
14 N -0.311 5.311
15 C -0.002 4.002
16 H 0.115 0.885
17 C -0.241 4.241
18 C -0.167 4.167
19 C -0.138 4.138
20 C -0.153 4.153
21 H 0.078 0.922
22 H 0.003 0.997
23 H 0.004 0.996
24 H 0.244 0.756
25 H 0.101 0.899
26 H 0.139 0.861
27 H 0.163 0.837
28 H 0.140 0.860
29 H 0.155 0.845
30 H 0.098 0.902
31 H 0.109 0.891
32 H 0.082 0.918
33 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 10.597 -17.719 0.749 20.660
hybrid contribution 0.422 1.201 1.016 1.629
sum 11.019 -16.519 1.765 19.935
Atomic orbital electron populations
1.70143 1.08335 1.28583 1.49987 1.26098 0.95786 1.04005 0.93839
0.85133 0.78481 0.76841 0.78608 1.19592 1.20985 1.17821 1.21631
0.94346 0.90555 1.52881 0.89711 1.18530 0.88754 0.84451 0.93973
1.46184 1.11179 1.05509 1.73064 1.21479 0.89968 0.84988 0.75690
1.90637 1.19438 1.85427 1.51963 1.21804 0.94067 0.87107 1.04625
1.60321 1.19132 1.00394 1.51211 1.21630 0.94694 0.90415 0.93503
0.88507 1.24125 1.03378 0.97923 0.98636 1.23603 0.98424 0.95531
0.99132 1.21436 1.01163 0.97869 0.93336 1.22520 1.00162 0.92657
0.99930 0.92245 0.99660 0.99559 0.75558 0.89946 0.86107 0.83683
0.85964 0.84533 0.90216 0.89063 0.91756 0.89884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16
2 C 0.00 0.12 5.46 84.65 0.46 0.59 16
3 Si 0.99 42.45 29.54 68.60 2.03 44.47 16
4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16
5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16
6 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16
7 C -0.56 -30.51 9.28 25.60 0.24 -30.27 16
8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16
9 C 0.27 14.85 5.43 85.63 0.46 15.32 16
10 N -0.71 -30.21 5.55 -466.78 -2.59 -32.80 16
11 C 0.49 19.99 7.87 87.66 0.69 20.68 16
12 O -0.59 -30.31 16.20 -3.02 -0.05 -30.36 16
13 C 0.06 1.52 6.00 85.56 0.51 2.03 16
14 N -0.68 -18.71 5.92 -495.90 -2.94 -21.65 16
15 C 0.11 2.17 3.21 44.86 0.14 2.32 16
16 H 0.10 1.77 7.84 -2.39 -0.02 1.75 16
17 C -0.22 -4.09 10.11 25.98 0.26 -3.82 16
18 C -0.15 -2.32 10.78 25.98 0.28 -2.04 16
19 C -0.10 -1.43 6.81 30.53 0.21 -1.22 16
20 C -0.11 -2.11 6.89 31.71 0.22 -1.89 16
21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
22 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16
23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
24 H 0.41 14.15 8.32 -92.71 -0.77 13.38 16
25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
26 H 0.12 2.72 8.07 -2.39 -0.02 2.70 16
27 H 0.34 10.42 8.17 -89.69 -0.73 9.69 16
28 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16
29 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16
30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16
31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
32 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16
33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
Total: -1.00 -71.68 285.01 -0.18 -71.86
By element:
Atomic # 1 Polarization: 23.74 SS G_CDS: -0.40 Total: 23.34 kcal
Atomic # 6 Polarization: -1.80 SS G_CDS: 3.48 Total: 1.68 kcal
Atomic # 7 Polarization: -105.75 SS G_CDS: -5.24 Total: -110.99 kcal
Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal
Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal
Total: -71.68 -0.18 -71.86 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700588160.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.109 kcal
(2) G-P(sol) polarization free energy of solvation -71.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.574 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds