Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 110.94382 * 2 1 4 4 C 1.46899 * 111.00009 * 56.01547 * 3 2 1 5 5 C 1.50699 * 109.46966 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00029 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99831 * 179.97438 * 5 4 3 8 8 C 1.37098 * 120.00044 * 179.97438 * 7 5 4 9 9 H 1.07995 * 119.99955 * 0.02562 * 8 7 5 10 10 C 1.38953 * 119.99717 * 179.97438 * 8 7 5 11 11 N 1.31419 * 119.99414 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00138 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46963 * 90.00397 * 12 10 8 14 14 H 1.48503 * 109.47017 * 209.99913 * 12 10 8 15 15 H 1.48492 * 109.47383 * 329.99955 * 12 10 8 16 16 C 1.54637 * 111.03596 * 236.01277 * 2 1 3 17 17 C 1.51104 * 104.82203 * 266.65909 * 16 2 1 18 18 C 1.30525 * 111.10650 * 343.50481 * 17 16 2 19 19 C 1.51094 * 111.10287 * 0.02562 * 18 17 16 20 20 H 1.08998 * 109.47759 * 183.98629 * 1 2 3 21 21 H 1.09000 * 109.47061 * 303.98731 * 1 2 3 22 22 H 1.09001 * 109.47089 * 63.98487 * 1 2 3 23 23 H 1.00899 * 111.00228 * 292.06020 * 3 2 1 24 24 H 1.09006 * 109.46632 * 299.99531 * 4 3 2 25 25 H 1.08995 * 109.47656 * 59.99507 * 4 3 2 26 26 H 0.97004 * 119.99770 * 359.97438 * 7 5 4 27 27 H 0.96999 * 119.99751 * 180.02562 * 11 10 8 28 28 H 1.09002 * 110.38719 * 147.78988 * 16 2 1 29 29 H 1.09000 * 110.38599 * 25.52408 * 16 2 1 30 30 H 1.08001 * 124.43953 * 163.48841 * 17 16 2 31 31 H 1.07999 * 124.44678 * 179.97438 * 18 17 16 32 32 H 1.08999 * 110.38926 * 135.24917 * 19 18 17 33 33 H 1.09008 * 110.38956 * 257.50891 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0551 1.3719 0.0000 4 6 1.5273 2.1376 1.1372 5 6 2.0863 3.5367 1.1034 6 8 2.8496 3.8636 0.2194 7 7 1.7380 4.4247 2.0557 8 6 2.2470 5.6973 2.0253 9 1 2.9266 5.9884 1.2382 10 6 1.8874 6.6129 3.0068 11 7 2.3749 7.8329 2.9774 12 14 0.7113 6.1095 4.3679 13 1 1.4835 5.5620 5.5120 14 1 -0.0638 7.2944 4.8157 15 1 -0.2209 5.0721 3.8581 16 6 2.0850 -0.8068 -1.1967 17 6 2.3033 -2.2006 -0.6554 18 6 2.3044 -2.2030 0.6499 19 6 2.0865 -0.8114 1.1966 20 1 -0.3634 -1.0251 0.0714 21 1 -0.3633 0.5745 0.8521 22 1 -0.3633 0.4507 -0.9235 23 1 1.8539 1.8361 -0.8730 24 1 0.4399 2.1796 1.0735 25 1 1.8182 1.6520 2.0686 26 1 1.1272 4.1632 2.7625 27 1 2.1243 8.4720 3.6627 28 1 3.0282 -0.3799 -1.5378 29 1 1.3608 -0.8249 -2.0111 30 1 2.4400 -3.0793 -1.2681 31 1 2.4421 -3.0841 1.2590 32 1 1.3621 -0.8324 2.0109 33 1 3.0298 -0.3861 1.5395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702148801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -12.725025 kcal Electronic energy + Delta-G solvation = -15246.656120 eV Core-core repulsion = 12693.732161 eV Total energy + Delta-G solvation = -2552.923959 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59790 -38.13941 -34.55450 -33.76593 -31.63892 -29.75605 -28.29676 -26.84097 -25.41769 -23.60021 -19.53934 -19.24839 -18.79849 -18.08704 -16.51578 -15.49007 -15.25124 -14.94992 -14.77776 -14.06438 -13.45867 -13.18850 -13.02015 -12.42554 -12.37645 -12.16113 -12.01833 -11.88436 -11.55264 -11.36890 -11.19747 -11.08612 -10.58506 -10.50459 -9.95921 -9.55358 -8.93863 -8.56274 -8.16995 -8.09056 -6.29406 -3.80632 2.22504 3.03541 3.08097 3.15956 3.76957 4.09981 4.13504 4.47844 4.70601 4.86405 4.99528 5.17250 5.23375 5.35886 5.54736 5.62886 5.64003 5.73431 5.82370 5.90572 5.92481 5.96322 6.01045 6.05955 6.23666 6.46607 6.84894 7.21834 7.60635 7.64950 8.16759 8.62055 8.97036 9.44590 9.85395 10.83866 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050890 B = 0.005831 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.069894 B = 4800.846512 C = 5056.235079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 N -0.652 5.652 4 C 0.045 3.955 5 C 0.450 3.550 6 O -0.565 6.565 7 N -0.592 5.592 8 C -0.304 4.304 9 H 0.119 0.881 10 C 0.041 3.959 11 N -0.882 5.882 12 Si 0.880 3.120 13 H -0.270 1.270 14 H -0.277 1.277 15 H -0.270 1.270 16 C -0.091 4.091 17 C -0.166 4.166 18 C -0.164 4.164 19 C -0.090 4.090 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.351 0.649 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.370 0.630 27 H 0.273 0.727 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -18.277 -2.234 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 N -0.284 5.284 4 C -0.088 4.088 5 C 0.236 3.764 6 O -0.446 6.446 7 N -0.231 5.231 8 C -0.433 4.433 9 H 0.137 0.863 10 C -0.162 4.162 11 N -0.522 5.522 12 Si 0.706 3.294 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.196 1.196 16 C -0.128 4.128 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.128 4.128 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.171 0.829 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.203 0.797 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.527 -17.964 -2.425 18.684 hybrid contribution -1.877 -0.116 0.966 2.114 sum -6.404 -18.080 -1.459 19.236 Atomic orbital electron populations 1.22431 0.96493 1.02305 1.02143 1.21817 0.91873 0.89375 0.95700 1.60298 1.61123 1.00772 1.06174 1.21757 0.97309 0.93813 0.95917 1.19754 0.85914 0.86135 0.84577 1.90561 1.37866 1.79133 1.37087 1.42211 1.43337 1.12168 1.25417 1.19438 1.26118 0.84919 1.12844 0.86295 1.25035 0.97952 0.95268 0.97911 1.69627 1.43799 1.03944 1.34869 0.86672 0.81221 0.78773 0.82730 1.19588 1.20199 1.19552 1.21410 1.01799 0.92539 0.97036 1.23179 1.01459 0.97549 0.96250 1.23227 1.01050 0.97696 0.96268 1.21485 1.01799 0.92304 0.97198 0.92018 0.92012 0.92459 0.82872 0.93408 0.89519 0.79720 0.91643 0.89327 0.91441 0.86108 0.86124 0.91560 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 8.25 37.16 0.31 -1.63 16 2 C 0.10 1.30 0.88 -129.73 -0.11 1.19 16 3 N -0.65 -10.35 5.75 -99.33 -0.57 -10.92 16 4 C 0.04 0.76 5.53 -4.98 -0.03 0.73 16 5 C 0.45 10.39 7.82 -10.98 -0.09 10.30 16 6 O -0.56 -15.38 15.78 5.55 0.09 -15.30 16 7 N -0.59 -14.29 5.09 -10.96 -0.06 -14.35 16 8 C -0.30 -8.71 10.16 -14.93 -0.15 -8.87 16 9 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 10 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 11 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 12 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 16 C -0.09 -1.03 6.06 -26.82 -0.16 -1.19 16 17 C -0.17 -1.70 10.78 -35.70 -0.38 -2.08 16 18 C -0.16 -1.71 10.78 -35.70 -0.38 -2.09 16 19 C -0.09 -1.08 5.14 -26.68 -0.14 -1.22 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.70 6.27 -51.93 -0.33 0.37 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.35 5.77 8.47 -39.29 -0.33 5.44 16 24 H 0.05 0.72 6.27 -51.93 -0.33 0.39 16 25 H 0.09 1.34 7.45 -51.93 -0.39 0.95 16 26 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.10 8.08 -51.93 -0.42 0.69 16 29 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.07 0.73 7.91 -51.93 -0.41 0.31 16 33 H 0.09 1.20 8.08 -51.92 -0.42 0.78 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -31.88 274.24 -6.10 -37.98 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.51 Total: 12.67 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.24 Total: -3.82 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.15 Total: -50.47 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.09 Total: -15.30 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.88 -6.10 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702148801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.256 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds