Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 110.94382 * 2 1 4 4 C 1.46899 * 111.00009 * 56.01547 * 3 2 1 5 5 C 1.50699 * 109.46966 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00029 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99831 * 179.97438 * 5 4 3 8 8 C 1.37098 * 120.00044 * 179.97438 * 7 5 4 9 9 H 1.07995 * 119.99955 * 0.02562 * 8 7 5 10 10 C 1.38953 * 119.99717 * 179.97438 * 8 7 5 11 11 N 1.31419 * 119.99414 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00138 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46963 * 90.00397 * 12 10 8 14 14 H 1.48503 * 109.47017 * 209.99913 * 12 10 8 15 15 H 1.48492 * 109.47383 * 329.99955 * 12 10 8 16 16 C 1.54637 * 111.03596 * 236.01277 * 2 1 3 17 17 C 1.51104 * 104.82203 * 266.65909 * 16 2 1 18 18 C 1.30525 * 111.10650 * 343.50481 * 17 16 2 19 19 C 1.51094 * 111.10287 * 0.02562 * 18 17 16 20 20 H 1.08998 * 109.47759 * 183.98629 * 1 2 3 21 21 H 1.09000 * 109.47061 * 303.98731 * 1 2 3 22 22 H 1.09001 * 109.47089 * 63.98487 * 1 2 3 23 23 H 1.00899 * 111.00228 * 292.06020 * 3 2 1 24 24 H 1.09006 * 109.46632 * 299.99531 * 4 3 2 25 25 H 1.08995 * 109.47656 * 59.99507 * 4 3 2 26 26 H 0.97004 * 119.99770 * 359.97438 * 7 5 4 27 27 H 0.96999 * 119.99751 * 180.02562 * 11 10 8 28 28 H 1.09002 * 110.38719 * 147.78988 * 16 2 1 29 29 H 1.09000 * 110.38599 * 25.52408 * 16 2 1 30 30 H 1.08001 * 124.43953 * 163.48841 * 17 16 2 31 31 H 1.07999 * 124.44678 * 179.97438 * 18 17 16 32 32 H 1.08999 * 110.38926 * 135.24917 * 19 18 17 33 33 H 1.09008 * 110.38956 * 257.50891 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0551 1.3719 0.0000 4 6 1.5273 2.1376 1.1372 5 6 2.0863 3.5367 1.1034 6 8 2.8496 3.8636 0.2194 7 7 1.7380 4.4247 2.0557 8 6 2.2470 5.6973 2.0253 9 1 2.9266 5.9884 1.2382 10 6 1.8874 6.6129 3.0068 11 7 2.3749 7.8329 2.9774 12 14 0.7113 6.1095 4.3679 13 1 1.4835 5.5620 5.5120 14 1 -0.0638 7.2944 4.8157 15 1 -0.2209 5.0721 3.8581 16 6 2.0850 -0.8068 -1.1967 17 6 2.3033 -2.2006 -0.6554 18 6 2.3044 -2.2030 0.6499 19 6 2.0865 -0.8114 1.1966 20 1 -0.3634 -1.0251 0.0714 21 1 -0.3633 0.5745 0.8521 22 1 -0.3633 0.4507 -0.9235 23 1 1.8539 1.8361 -0.8730 24 1 0.4399 2.1796 1.0735 25 1 1.8182 1.6520 2.0686 26 1 1.1272 4.1632 2.7625 27 1 2.1243 8.4720 3.6627 28 1 3.0282 -0.3799 -1.5378 29 1 1.3608 -0.8249 -2.0111 30 1 2.4400 -3.0793 -1.2681 31 1 2.4421 -3.0841 1.2590 32 1 1.3621 -0.8324 2.0109 33 1 3.0298 -0.3861 1.5395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702148801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -36.827936 kcal Electronic energy + Delta-G solvation = -15247.701301 eV Core-core repulsion = 12693.732161 eV Total energy + Delta-G solvation = -2553.969140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75862 -39.81284 -36.16497 -35.37051 -33.74792 -30.85161 -29.18517 -28.26004 -26.65948 -25.21745 -21.35569 -20.46526 -20.20899 -19.38867 -17.94328 -16.97111 -16.57646 -16.44860 -16.03313 -15.68188 -14.94412 -14.56834 -14.41186 -14.22113 -13.79246 -13.33839 -13.02205 -12.96699 -12.87811 -12.59453 -12.41900 -12.32513 -11.99006 -11.96477 -11.52646 -11.42514 -10.45863 -10.25683 -9.75715 -9.32434 -8.41901 -6.02984 1.29785 1.35459 1.44228 1.44499 1.94078 2.22718 2.70251 3.14154 3.39677 3.59091 3.84892 4.07221 4.15257 4.34495 4.41378 4.48731 4.56410 4.74278 4.82541 4.89590 4.93916 5.09130 5.12103 5.12963 5.32928 5.52652 5.66047 5.91320 6.06415 6.13706 6.42166 6.59162 6.87054 7.38578 7.95102 8.75859 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050890 B = 0.005831 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.069894 B = 4800.846512 C = 5056.235079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 N -0.670 5.670 4 C 0.061 3.939 5 C 0.448 3.552 6 O -0.615 6.615 7 N -0.590 5.590 8 C -0.330 4.330 9 H 0.055 0.945 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.257 1.257 14 H -0.274 1.274 15 H -0.231 1.231 16 C -0.093 4.093 17 C -0.166 4.166 18 C -0.167 4.167 19 C -0.094 4.094 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.344 0.656 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.390 0.610 27 H 0.279 0.721 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 -21.108 -0.659 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 N -0.302 5.302 4 C -0.071 4.071 5 C 0.236 3.764 6 O -0.499 6.499 7 N -0.232 5.232 8 C -0.459 4.459 9 H 0.073 0.927 10 C -0.213 4.213 11 N -0.575 5.575 12 Si 0.784 3.216 13 H -0.181 1.181 14 H -0.199 1.199 15 H -0.155 1.155 16 C -0.130 4.130 17 C -0.184 4.184 18 C -0.185 4.185 19 C -0.131 4.131 20 H 0.094 0.906 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.163 0.837 24 H 0.096 0.904 25 H 0.127 0.873 26 H 0.225 0.775 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.098 0.902 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.910 -20.833 -0.855 21.965 hybrid contribution -1.028 0.785 0.353 1.340 sum -7.938 -20.048 -0.502 21.568 Atomic orbital electron populations 1.22376 0.94907 1.03313 1.02276 1.21955 0.93055 0.87355 0.96686 1.60295 1.62251 1.02196 1.05444 1.21647 0.98509 0.89517 0.97416 1.20994 0.84360 0.88136 0.82897 1.90538 1.39898 1.80588 1.38886 1.42029 1.43879 1.10758 1.26548 1.19016 1.26848 0.87667 1.12414 0.92722 1.26120 0.99799 0.94586 1.00776 1.69809 1.45566 1.05690 1.36411 0.85368 0.78606 0.79510 0.78073 1.18105 1.19888 1.15460 1.21422 1.01238 0.93232 0.97151 1.23332 1.01218 0.97396 0.96502 1.23361 1.01078 0.97512 0.96521 1.21505 1.01125 0.93098 0.97380 0.90553 0.91814 0.92381 0.83675 0.90417 0.87267 0.77475 0.91103 0.91131 0.90283 0.84014 0.84069 0.90228 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.25 71.98 0.59 -2.62 16 2 C 0.10 2.29 0.88 4.74 0.00 2.30 16 3 N -0.67 -20.63 5.75 -468.16 -2.69 -23.32 16 4 C 0.06 1.95 5.53 85.56 0.47 2.42 16 5 C 0.45 20.73 7.82 87.66 0.69 21.42 16 6 O -0.61 -34.89 15.78 -3.05 -0.05 -34.94 16 7 N -0.59 -28.34 5.09 -306.99 -1.56 -29.90 16 8 C -0.33 -19.63 10.16 84.04 0.85 -18.77 16 9 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 10 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 11 N -0.93 -56.75 13.96 21.67 0.30 -56.45 16 12 Si 0.96 38.96 27.74 68.60 1.90 40.86 16 13 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 14 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 15 H -0.23 -7.84 6.52 99.48 0.65 -7.20 16 16 C -0.09 -1.96 6.06 30.53 0.19 -1.77 16 17 C -0.17 -2.94 10.78 26.26 0.28 -2.66 16 18 C -0.17 -2.97 10.78 26.26 0.28 -2.69 16 19 C -0.09 -2.00 5.14 30.63 0.16 -1.84 16 20 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.06 1.18 6.27 -2.39 -0.01 1.16 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.34 11.30 8.47 -89.70 -0.76 10.54 16 24 H 0.08 2.06 6.27 -2.38 -0.01 2.04 16 25 H 0.11 3.03 7.45 -2.39 -0.02 3.01 16 26 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 27 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 29 H 0.08 1.45 7.91 -2.39 -0.02 1.43 16 30 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.08 1.47 7.91 -2.39 -0.02 1.45 16 33 H 0.07 1.74 8.08 -2.38 -0.02 1.72 16 Total: -1.00 -73.89 274.24 1.66 -72.24 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.23 Total: 36.05 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 3.99 Total: -4.55 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.95 Total: -109.67 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.05 Total: -34.94 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.90 Total: 40.86 kcal Total: -73.89 1.66 -72.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702148801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.411 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds