Wall clock time and date at job start Mon Mar 30 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 115.56244 * 2 1 4 4 C 1.53081 * 117.49342 * 214.29353 * 2 1 3 5 5 C 1.52998 * 117.49956 * 145.69427 * 2 1 3 6 6 C 1.53006 * 117.49815 * 214.98224 * 5 2 1 7 7 C 1.52998 * 109.47128 * 88.78872 * 6 5 2 8 8 C 1.50692 * 115.55029 * 294.01191 * 7 6 5 9 9 H 1.07994 * 120.00477 * 8.36032 * 8 7 6 10 10 C 1.37886 * 120.00019 * 188.08679 * 8 7 6 11 11 N 1.31518 * 119.99575 * 0.27437 * 10 8 7 12 12 Si 1.86800 * 120.00115 * 180.27372 * 10 8 7 13 13 H 1.48502 * 109.46841 * 89.99844 * 12 10 8 14 14 H 1.48501 * 109.46951 * 209.99947 * 12 10 8 15 15 H 1.48498 * 109.47277 * 329.99901 * 12 10 8 16 16 C 1.53000 * 117.51698 * 79.71762 * 7 6 5 17 17 C 1.52994 * 60.00362 * 107.47421 * 16 7 6 18 18 C 1.50699 * 117.49677 * 359.97226 * 5 2 1 19 19 O 1.20824 * 120.00076 * 326.80302 * 18 5 2 20 20 O 1.34234 * 119.99567 * 146.80373 * 18 5 2 21 21 H 1.08993 * 109.47066 * 274.30980 * 1 2 3 22 22 H 1.09006 * 109.47185 * 34.31234 * 1 2 3 23 23 H 1.09003 * 109.47146 * 154.30570 * 1 2 3 24 24 H 1.09002 * 117.50983 * 145.03630 * 4 2 1 25 25 H 1.08995 * 117.49222 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.46917 * 328.78939 * 6 5 2 27 27 H 1.08997 * 109.46448 * 208.79067 * 6 5 2 28 28 H 0.97003 * 119.99560 * 179.97438 * 11 10 8 29 29 H 1.09001 * 117.49837 * 214.97069 * 16 7 6 30 30 H 1.08999 * 117.49778 * 359.97438 * 16 7 6 31 31 H 1.08993 * 117.50397 * 252.50843 * 17 16 7 32 32 H 1.08998 * 117.51640 * 107.47754 * 17 16 7 33 33 H 0.96707 * 116.99272 * 185.01764 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2367 -1.1219 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 3.5490 -0.7760 1.4714 7 6 3.2508 -0.2816 2.8883 8 6 2.5041 1.0243 2.9773 9 1 2.0991 1.4768 2.0843 10 6 2.3330 1.6387 4.1998 11 7 2.8263 1.0876 5.2874 12 14 1.4008 3.2536 4.3113 13 1 -0.0424 2.9781 4.5269 14 1 1.9275 4.0518 5.4473 15 1 1.5762 4.0146 3.0482 16 6 2.9604 -1.3359 3.9584 17 6 4.2890 -0.5773 3.9727 18 6 1.3720 -2.1403 1.4611 19 8 0.3085 -1.8110 1.9305 20 8 1.7836 -3.4142 1.5598 21 1 -0.3633 0.0772 1.0247 22 1 -0.3634 0.8489 -0.5793 23 1 -0.3633 -0.9261 -0.4456 24 1 3.1719 -0.8765 -1.2684 25 1 1.6113 -1.8596 -1.2677 26 1 4.0664 0.0057 0.9152 27 1 4.1789 -1.6641 1.5214 28 1 2.7062 1.5201 6.1474 29 1 2.2292 -1.0850 4.7268 30 1 2.9814 -2.3820 3.6529 31 1 5.1841 -1.1242 3.6767 32 1 4.4321 0.1730 4.7503 33 1 1.1638 -4.0469 1.9482 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703314001.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:36 Heat of formation + Delta-G solvation = -41.041869 kcal Electronic energy + Delta-G solvation = -16332.909495 eV Core-core repulsion = 13746.464874 eV Total energy + Delta-G solvation = -2586.444621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10104 -37.44423 -36.03527 -35.29375 -31.63420 -29.20832 -26.78661 -25.30963 -24.01064 -20.88902 -20.54659 -19.45359 -18.83658 -17.24423 -16.19603 -15.42085 -15.06444 -14.63021 -14.14456 -13.50476 -13.26262 -12.87594 -12.51455 -12.00176 -11.84153 -11.60802 -11.10397 -11.01564 -10.94043 -10.86525 -10.68758 -10.20490 -10.09176 -9.89256 -9.71750 -9.31239 -8.99438 -8.75455 -8.22939 -7.95878 -5.85383 -3.94312 2.87565 3.33030 3.39661 3.41495 3.54967 4.09710 4.44790 4.96810 5.08742 5.23613 5.39361 5.73653 5.84646 5.92883 6.00002 6.18781 6.24031 6.35919 6.39701 6.52432 6.58292 6.69362 6.81359 6.83149 7.11086 7.12007 7.32831 7.40560 7.75970 8.04246 8.34457 8.54925 8.60695 9.01989 9.61541 11.06627 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.012217 C = 0.010220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.817841 B = 2291.328386 C = 2739.024808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 H 0.118 0.882 4 C -0.174 4.174 5 C -0.098 4.098 6 C -0.035 4.035 7 C 0.017 3.983 8 C -0.462 4.462 9 H 0.063 0.937 10 C 0.057 3.943 11 N -0.881 5.881 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.274 1.274 16 C -0.192 4.192 17 C -0.192 4.192 18 C 0.526 3.474 19 O -0.499 6.499 20 O -0.521 6.521 21 H 0.083 0.917 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.257 0.743 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.132 0.868 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -4.775 -9.199 10.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.122 4.122 3 H 0.136 0.864 4 C -0.211 4.211 5 C -0.099 4.099 6 C -0.072 4.072 7 C 0.016 3.984 8 C -0.500 4.500 9 H 0.082 0.918 10 C -0.143 4.143 11 N -0.520 5.520 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.230 4.230 17 C -0.230 4.230 18 C 0.368 3.632 19 O -0.385 6.385 20 O -0.332 6.332 21 H 0.102 0.898 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.120 0.880 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.149 0.851 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.072 -4.334 -9.028 10.072 hybrid contribution -0.862 0.248 0.625 1.093 sum -1.934 -4.086 -8.404 9.543 Atomic orbital electron populations 1.21446 0.92612 1.00247 1.03664 1.22442 0.95621 0.94498 0.99649 0.86387 1.23375 1.03155 1.02200 0.92333 1.20824 0.99284 0.97386 0.92438 1.20654 0.90803 0.99207 0.96581 1.18961 0.99598 0.94740 0.85076 1.20593 1.32365 1.03680 0.93339 0.91844 1.25011 0.95753 0.97669 0.95906 1.69933 1.44978 1.38683 0.98408 0.86569 0.80175 0.83541 0.77595 1.20726 1.21388 1.19869 1.22638 1.01330 0.92940 1.06103 1.23214 0.89537 1.03767 1.06455 1.22147 0.84257 0.80810 0.75977 1.90651 1.24077 1.79825 1.43913 1.84553 1.50796 1.20472 1.77375 0.89782 0.92899 0.93745 0.88017 0.89091 0.91309 0.92826 0.93280 0.89153 0.93964 0.94495 0.85059 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.61 37.16 0.32 -1.74 16 2 C -0.10 -1.79 5.10 -90.58 -0.46 -2.25 16 3 H 0.12 2.05 7.50 -51.93 -0.39 1.66 16 4 C -0.17 -2.55 9.60 -26.69 -0.26 -2.81 16 5 C -0.10 -1.84 1.89 -155.66 -0.29 -2.13 16 6 C -0.04 -0.72 5.04 -26.73 -0.13 -0.85 16 7 C 0.02 0.41 1.86 -155.66 -0.29 0.12 16 8 C -0.46 -12.48 8.81 -34.44 -0.30 -12.78 16 9 H 0.06 1.66 6.21 -52.49 -0.33 1.33 16 10 C 0.06 1.57 5.29 -17.81 -0.09 1.48 16 11 N -0.88 -24.98 8.67 55.43 0.48 -24.50 16 12 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.19 -4.93 8.28 -26.73 -0.22 -5.15 16 17 C -0.19 -4.89 9.32 -26.73 -0.25 -5.14 16 18 C 0.53 10.32 5.44 36.01 0.20 10.52 16 19 O -0.50 -11.06 15.06 -18.75 -0.28 -11.35 16 20 O -0.52 -8.55 13.09 -39.27 -0.51 -9.07 16 21 H 0.08 1.67 6.80 -51.93 -0.35 1.32 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.69 7.89 -51.93 -0.41 0.28 16 24 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 26 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 27 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.09 2.61 6.99 -51.93 -0.36 2.24 16 30 H 0.04 1.01 7.43 -51.93 -0.39 0.62 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.13 3.67 5.58 -51.93 -0.29 3.38 16 33 H 0.40 4.70 9.11 45.56 0.41 5.12 16 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -30.65 271.39 -6.80 -37.45 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.76 Total: 7.66 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.79 Total: -20.75 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.48 Total: -24.50 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.80 Total: -20.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.65 -6.80 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703314001.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.594 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds