Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 5 5 C 1.50706 * 109.47238 * 294.99946 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 14 14 C 1.50701 * 110.91357 * 299.29652 * 13 2 1 15 15 O 1.20828 * 119.99770 * 0.02562 * 14 13 2 16 16 O 1.34227 * 119.99905 * 179.97438 * 14 13 2 17 17 C 1.54635 * 111.03833 * 175.33012 * 13 2 1 18 18 C 1.51160 * 104.69621 * 217.36407 * 17 13 2 19 19 C 1.30529 * 111.12043 * 16.37957 * 18 17 13 20 20 C 1.51104 * 111.10155 * 0.03718 * 19 18 17 21 21 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 22 22 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 23 23 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 175.00260 * 4 2 1 25 25 H 1.09000 * 109.47611 * 55.00557 * 4 2 1 26 26 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 27 27 H 0.96696 * 117.00333 * 179.97438 * 16 14 13 28 28 H 1.09005 * 110.38480 * 336.15074 * 17 13 2 29 29 H 1.09004 * 110.38441 * 98.51917 * 17 13 2 30 30 H 1.07998 * 124.43264 * 196.40685 * 18 17 13 31 31 H 1.08002 * 124.44905 * 180.02562 * 19 18 17 32 32 H 1.09000 * 110.38081 * 224.74828 * 20 19 18 33 33 H 1.08995 * 110.48416 * 102.42227 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.1715 0.0937 5.7233 11 1 2.5080 0.3536 6.3184 12 1 1.4225 2.0080 4.9166 13 6 2.0401 -0.7213 -1.2492 14 6 1.5700 -2.1529 -1.2734 15 8 0.8829 -2.5784 -0.3752 16 8 1.9136 -2.9549 -2.2934 17 6 3.5813 -0.6414 -1.3459 18 6 3.8650 -0.4778 -2.8216 19 6 2.7915 -0.1149 -3.4695 20 6 1.6129 0.0251 -2.5343 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.1263 -0.7994 1.2056 25 1 1.6055 -1.7198 1.2952 26 1 2.9245 -1.8410 4.7318 27 1 1.5886 -3.8652 -2.2649 28 1 3.9525 0.2197 -0.7902 29 1 4.0333 -1.5598 -0.9711 30 1 4.8294 -0.6404 -3.2798 31 1 2.7511 0.0623 -4.5341 32 1 0.7275 -0.4403 -2.9673 33 1 1.4210 1.0759 -2.3172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710018773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -84.287498 kcal Electronic energy + Delta-G solvation = -16089.521636 eV Core-core repulsion = 13501.201744 eV Total energy + Delta-G solvation = -2588.319892 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58778 -37.88010 -35.93066 -34.08604 -32.03013 -28.46915 -28.35257 -26.42678 -23.45746 -23.30477 -20.67208 -18.90612 -18.54617 -17.41671 -16.41967 -15.87273 -15.05526 -14.88711 -14.28800 -13.92425 -13.21770 -12.48628 -12.36273 -12.31920 -11.93347 -11.81386 -11.66603 -11.34085 -11.02460 -10.89374 -10.71992 -10.56093 -10.35912 -10.26210 -10.05490 -9.38934 -8.99741 -8.80596 -8.65398 -8.19470 -5.88959 -3.89043 2.46066 2.77045 3.37531 3.43471 3.46146 3.50081 4.53267 4.82246 4.85300 5.23643 5.44902 5.47340 5.54627 5.82203 5.95933 5.99569 6.08076 6.19472 6.25597 6.31266 6.43768 6.58110 6.69399 6.88345 6.99844 7.10590 7.21136 7.30335 7.78267 8.01005 8.18434 8.45928 8.56604 9.18357 9.72498 11.22589 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.038481 B = 0.008096 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.466020 B = 3457.727219 C = 3551.277336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 H 0.069 0.931 4 C 0.015 3.985 5 C -0.510 4.510 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.047 4.047 14 C 0.486 3.514 15 O -0.484 6.484 16 O -0.520 6.520 17 C -0.083 4.083 18 C -0.156 4.156 19 C -0.169 4.169 20 C -0.083 4.083 21 H 0.063 0.937 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.011 0.989 25 H 0.045 0.955 26 H 0.258 0.742 27 H 0.399 0.601 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 1.031 -14.068 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 H 0.087 0.913 4 C -0.022 4.022 5 C -0.549 4.549 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.048 4.048 14 C 0.327 3.673 15 O -0.369 6.369 16 O -0.331 6.331 17 C -0.120 4.120 18 C -0.174 4.174 19 C -0.187 4.187 20 C -0.120 4.120 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.085 0.915 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.256 0.744 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.123 1.211 -13.673 13.727 hybrid contribution -0.379 -0.206 0.931 1.027 sum -0.257 1.005 -12.742 12.784 Atomic orbital electron populations 1.21942 0.95736 1.02623 0.99972 1.21170 0.95822 0.98216 0.92730 0.91268 1.19415 0.95802 0.97373 0.89610 1.21221 1.34413 1.08087 0.91135 0.92783 1.24993 0.95489 0.95104 0.98944 1.69981 1.39177 1.21237 1.23132 0.86667 0.78207 0.80368 0.83164 1.20809 1.21388 1.19995 1.21537 0.96987 0.87786 0.98533 1.23293 0.77158 0.88514 0.78316 1.90716 1.34899 1.75605 1.35696 1.84594 1.73215 1.26934 1.48400 1.21400 0.92884 1.03389 0.94286 1.23263 0.98520 0.99852 0.95756 1.23130 0.95253 1.01659 0.98673 1.21402 0.97346 1.00787 0.92429 0.91822 0.95373 0.91549 0.97049 0.93673 0.93247 0.74438 0.88920 0.90765 0.86001 0.86101 0.91366 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.55 37.16 0.32 -2.59 16 2 C -0.06 -1.26 1.41 -90.62 -0.13 -1.39 16 3 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 4 C 0.01 0.39 3.99 -27.88 -0.11 0.28 16 5 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 6 H 0.05 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 13 C -0.05 -0.82 0.34 -153.94 -0.05 -0.88 16 14 C 0.49 8.88 6.35 36.01 0.23 9.11 16 15 O -0.48 -10.63 12.43 -18.75 -0.23 -10.87 16 16 O -0.52 -7.51 13.03 -39.25 -0.51 -8.02 16 17 C -0.08 -1.34 4.86 -26.80 -0.13 -1.47 16 18 C -0.16 -2.07 10.67 -35.67 -0.38 -2.45 16 19 C -0.17 -2.14 10.67 -35.70 -0.38 -2.52 16 20 C -0.08 -1.17 4.89 -26.83 -0.13 -1.30 16 21 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 22 H 0.03 0.46 7.37 -51.93 -0.38 0.08 16 23 H 0.07 1.42 5.70 -51.93 -0.30 1.13 16 24 H 0.01 0.31 7.30 -51.93 -0.38 -0.07 16 25 H 0.05 1.32 5.73 -51.93 -0.30 1.02 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.40 4.06 9.10 45.56 0.41 4.47 16 28 H 0.09 1.53 7.87 -51.93 -0.41 1.12 16 29 H 0.07 1.27 7.90 -51.93 -0.41 0.86 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.09 1.16 7.84 -51.93 -0.41 0.76 16 LS Contribution 268.46 15.07 4.05 4.05 Total: -1.00 -32.98 268.46 -5.85 -38.83 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.71 Total: 2.33 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.15 Total: -16.56 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.74 Total: -26.90 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.74 Total: -18.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.98 -5.85 -38.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710018773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.458 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds