Wall clock time and date at job start Mon Mar 30 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 5 5 C 1.50706 * 109.47238 * 294.99946 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 14 14 C 1.50701 * 110.91357 * 299.29652 * 13 2 1 15 15 O 1.20828 * 119.99770 * 0.02562 * 14 13 2 16 16 O 1.34227 * 119.99905 * 179.97438 * 14 13 2 17 17 C 1.54635 * 111.03833 * 175.33012 * 13 2 1 18 18 C 1.51160 * 104.69621 * 217.36407 * 17 13 2 19 19 C 1.30529 * 111.12043 * 16.37957 * 18 17 13 20 20 C 1.51104 * 111.10155 * 0.03718 * 19 18 17 21 21 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 22 22 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 23 23 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 175.00260 * 4 2 1 25 25 H 1.09000 * 109.47611 * 55.00557 * 4 2 1 26 26 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 27 27 H 0.96696 * 117.00333 * 179.97438 * 16 14 13 28 28 H 1.09005 * 110.38480 * 336.15074 * 17 13 2 29 29 H 1.09004 * 110.38441 * 98.51917 * 17 13 2 30 30 H 1.07998 * 124.43264 * 196.40685 * 18 17 13 31 31 H 1.08002 * 124.44905 * 180.02562 * 19 18 17 32 32 H 1.09000 * 110.38081 * 224.74828 * 20 19 18 33 33 H 1.08995 * 110.48416 * 102.42227 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.1715 0.0937 5.7233 11 1 2.5080 0.3536 6.3184 12 1 1.4225 2.0080 4.9166 13 6 2.0401 -0.7213 -1.2492 14 6 1.5700 -2.1529 -1.2734 15 8 0.8829 -2.5784 -0.3752 16 8 1.9136 -2.9549 -2.2934 17 6 3.5813 -0.6414 -1.3459 18 6 3.8650 -0.4778 -2.8216 19 6 2.7915 -0.1149 -3.4695 20 6 1.6129 0.0251 -2.5343 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 3.1263 -0.7994 1.2056 25 1 1.6055 -1.7198 1.2952 26 1 2.9245 -1.8410 4.7318 27 1 1.5886 -3.8652 -2.2649 28 1 3.9525 0.2197 -0.7902 29 1 4.0333 -1.5598 -0.9711 30 1 4.8294 -0.6404 -3.2798 31 1 2.7511 0.0623 -4.5341 32 1 0.7275 -0.4403 -2.9673 33 1 1.4210 1.0759 -2.3172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710018773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:54 Heat of formation + Delta-G solvation = -105.830715 kcal Electronic energy + Delta-G solvation = -16090.455820 eV Core-core repulsion = 13501.201744 eV Total energy + Delta-G solvation = -2589.254076 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.98780 -39.18383 -37.34311 -35.84300 -34.02619 -30.04146 -29.61997 -28.17478 -25.42200 -24.62128 -22.33976 -20.41515 -19.61496 -18.80049 -18.41313 -17.35066 -16.58534 -16.44027 -16.02715 -15.22878 -14.91634 -14.32911 -14.04305 -13.56483 -13.42909 -13.32705 -12.96084 -12.94279 -12.78043 -12.59981 -12.27770 -12.16260 -12.01677 -11.85596 -11.79183 -11.19044 -10.85176 -10.74871 -10.40929 -9.71207 -8.13910 -6.21931 1.27404 1.38500 1.40502 1.50784 1.53498 2.21191 2.42933 3.19480 3.60116 3.61170 3.88798 4.32087 4.40129 4.46513 4.63451 4.67617 4.79965 4.84673 4.90141 4.99971 5.04292 5.19803 5.30398 5.39618 5.52196 5.54466 5.67919 5.69517 5.87614 6.09329 6.12787 6.32753 6.94867 7.16751 7.44508 8.98281 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.038481 B = 0.008096 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.466020 B = 3457.727219 C = 3551.277336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 H 0.076 0.924 4 C 0.023 3.977 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.260 1.260 13 C -0.055 4.055 14 C 0.489 3.511 15 O -0.531 6.531 16 O -0.505 6.505 17 C -0.085 4.085 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.080 4.080 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.047 0.953 24 H -0.015 1.015 25 H 0.010 0.990 26 H 0.259 0.741 27 H 0.419 0.581 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 2.477 -15.908 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 H 0.094 0.906 4 C -0.014 4.014 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.184 1.184 13 C -0.056 4.056 14 C 0.332 3.668 15 O -0.420 6.420 16 O -0.318 6.318 17 C -0.122 4.122 18 C -0.181 4.181 19 C -0.170 4.170 20 C -0.117 4.117 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.004 0.996 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.279 0.721 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.098 0.902 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.231 2.655 -15.551 15.778 hybrid contribution -0.259 -0.728 1.466 1.657 sum -0.491 1.927 -14.085 14.225 Atomic orbital electron populations 1.21847 0.95056 1.01701 1.00989 1.20978 0.96337 0.98118 0.91918 0.90606 1.19223 0.93923 0.96130 0.92094 1.21687 1.34012 1.08402 0.92303 0.92111 1.25959 0.95494 0.96155 1.02656 1.70135 1.40602 1.23110 1.23944 0.85524 0.77808 0.79430 0.78750 1.20313 1.20929 1.18396 1.21473 0.97760 0.87616 0.98751 1.23465 0.76087 0.89160 0.78046 1.90714 1.37221 1.76533 1.37506 1.84522 1.72535 1.28181 1.46522 1.21371 0.91926 1.01993 0.96924 1.23260 1.00173 1.01261 0.93443 1.23336 0.93719 1.00079 0.99904 1.21436 0.98557 1.00966 0.90702 0.93642 0.91375 0.93431 0.99639 0.97166 0.93220 0.72101 0.90003 0.92864 0.83629 0.82654 0.90231 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.55 71.98 0.62 -4.88 16 2 C -0.06 -2.29 1.41 -10.79 -0.02 -2.31 16 3 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 4 C 0.02 1.27 3.99 29.85 0.12 1.39 16 5 C -0.53 -30.77 8.41 25.60 0.22 -30.56 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 8 N -0.94 -59.72 13.29 21.45 0.28 -59.44 16 9 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C -0.05 -1.87 0.34 -51.81 -0.02 -1.89 16 14 C 0.49 17.83 6.35 71.24 0.45 18.28 16 15 O -0.53 -24.10 12.43 21.96 0.27 -23.83 16 16 O -0.50 -13.82 13.03 -51.39 -0.67 -14.49 16 17 C -0.08 -2.73 4.86 30.55 0.15 -2.58 16 18 C -0.16 -3.89 10.67 26.28 0.28 -3.61 16 19 C -0.15 -3.23 10.67 26.26 0.28 -2.95 16 20 C -0.08 -2.00 4.89 30.53 0.15 -1.85 16 21 H 0.04 1.92 6.95 -2.39 -0.02 1.90 16 22 H 0.07 2.11 7.37 -2.39 -0.02 2.09 16 23 H 0.05 2.07 5.70 -2.38 -0.01 2.05 16 24 H -0.01 -0.86 7.30 -2.39 -0.02 -0.88 16 25 H 0.01 0.62 5.73 -2.39 -0.01 0.61 16 26 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.42 7.91 9.10 -74.06 -0.67 7.23 16 28 H 0.08 2.75 7.87 -2.38 -0.02 2.73 16 29 H 0.05 1.88 7.90 -2.39 -0.02 1.86 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.08 1.85 7.90 -2.39 -0.02 1.83 16 33 H 0.10 2.28 7.84 -2.39 -0.02 2.26 16 Total: -1.00 -73.65 268.46 5.04 -68.61 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.44 Total: 11.95 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 2.69 Total: -30.85 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.28 Total: -59.44 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.40 Total: -38.32 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.65 5.04 -68.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710018773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.220 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds