Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46968 * 308.21063 * 3 2 1 5 5 C 1.36937 * 120.00233 * 264.21262 * 4 3 2 6 6 H 1.08002 * 119.99533 * 197.23094 * 5 4 3 7 7 C 1.38804 * 120.00210 * 17.23100 * 5 4 3 8 8 N 1.31619 * 120.00106 * 22.01713 * 7 5 4 9 9 Si 1.86803 * 120.00184 * 202.01982 * 7 5 4 10 10 H 1.48502 * 109.47019 * 60.00122 * 9 7 5 11 11 H 1.48497 * 109.46803 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46805 * 300.00162 * 9 7 5 13 13 C 1.46502 * 119.99710 * 84.21457 * 4 3 2 14 14 H 1.08999 * 109.47171 * 359.97438 * 13 4 3 15 15 C 1.52994 * 109.47293 * 119.99862 * 13 4 3 16 16 C 1.53002 * 109.47159 * 179.97438 * 15 13 4 17 17 C 1.52996 * 109.47298 * 300.00060 * 16 15 13 18 18 C 1.53004 * 109.47113 * 59.99870 * 17 16 15 19 19 H 1.08999 * 109.47085 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46973 * 60.00229 * 18 17 16 21 21 C 1.53000 * 109.46817 * 240.00119 * 13 4 3 22 22 H 1.09003 * 109.47159 * 188.21725 * 3 2 1 23 23 H 1.08990 * 109.47246 * 68.21210 * 3 2 1 24 24 H 0.96996 * 120.00759 * 179.97438 * 8 7 5 25 25 H 1.08994 * 109.47445 * 60.00192 * 15 13 4 26 26 H 1.08994 * 109.47150 * 299.99779 * 15 13 4 27 27 H 1.08997 * 109.47249 * 179.97438 * 16 15 13 28 28 H 1.09005 * 109.47046 * 60.00488 * 16 15 13 29 29 H 1.08996 * 109.47164 * 300.00244 * 17 16 15 30 30 H 1.08997 * 109.47120 * 179.97438 * 17 16 15 31 31 H 0.96695 * 114.00068 * 60.00005 * 20 18 17 32 32 H 1.08997 * 109.47821 * 60.00081 * 21 13 4 33 33 H 1.09003 * 109.47317 * 299.99235 * 21 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8535 1.0853 5 6 3.4374 -0.3010 2.2910 6 1 4.0474 -0.8577 2.9870 7 6 2.9988 0.9745 2.6187 8 7 1.9423 1.4814 2.0195 9 14 3.9082 1.9719 3.9102 10 1 5.3143 2.1759 3.4785 11 1 3.2451 3.2904 4.0747 12 1 3.8883 1.2423 5.2035 13 6 3.2209 -2.2988 0.8806 14 1 2.9057 -2.5508 -0.1320 15 6 4.6783 -2.7190 1.0810 16 6 4.8078 -4.2285 0.8678 17 6 3.9220 -4.9638 1.8755 18 6 2.4644 -4.5436 1.6751 19 1 1.8333 -5.0678 2.3927 20 8 2.0516 -4.8744 0.3476 21 6 2.3348 -3.0345 1.8879 22 1 2.9709 1.0180 0.1469 23 1 2.9715 -0.3806 -0.9542 24 1 1.6355 2.3726 2.2487 25 1 4.9931 -2.4671 2.0937 26 1 5.3094 -2.1949 0.3634 27 1 5.8462 -4.5278 1.0102 28 1 4.4930 -4.4808 -0.1448 29 1 4.2368 -4.7115 2.8880 30 1 4.0139 -6.0391 1.7233 31 1 2.1076 -5.8176 0.1418 32 1 1.2965 -2.7353 1.7451 33 1 2.6496 -2.7827 2.9006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712832525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = -34.041641 kcal Electronic energy + Delta-G solvation = -16091.003831 eV Core-core repulsion = 13537.155514 eV Total energy + Delta-G solvation = -2553.848317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.19250 -37.90513 -36.37839 -35.18398 -33.09300 -30.95608 -30.17871 -28.35617 -25.24876 -23.18025 -22.26346 -20.75825 -18.94514 -17.90358 -17.41818 -17.13794 -16.16293 -15.69755 -15.38240 -15.21753 -14.79925 -14.09832 -13.83296 -13.70164 -13.26740 -13.18481 -13.04356 -12.85823 -12.67244 -12.50461 -12.27885 -11.94795 -11.93249 -11.70543 -11.59429 -11.24630 -10.83032 -10.71184 -10.36661 -8.93212 -7.87629 -5.24075 1.52601 1.56150 1.61615 2.29100 2.51852 2.62859 3.30593 3.52261 3.63632 3.91547 4.02318 4.08814 4.27467 4.44276 4.54667 4.70186 4.73676 4.81024 4.90069 5.00267 5.17148 5.23830 5.28666 5.35829 5.37326 5.47362 5.67893 5.71890 5.77579 6.31735 7.06930 7.10515 7.33085 7.84432 8.26028 9.19224 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.010602 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.560685 B = 2640.450390 C = 3253.772221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C 0.261 3.739 3 C 0.256 3.744 4 N -0.591 5.591 5 C -0.246 4.246 6 H 0.084 0.916 7 C -0.049 4.049 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.307 1.307 12 H -0.284 1.284 13 C 0.177 3.823 14 H 0.061 0.939 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.142 4.142 18 C 0.111 3.889 19 H 0.054 0.946 20 O -0.579 6.579 21 C -0.113 4.113 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.247 0.753 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.389 0.611 32 H 0.015 0.985 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.817 -12.622 -2.276 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.057 4.057 3 C 0.126 3.874 4 N -0.311 5.311 5 C -0.375 4.375 6 H 0.102 0.898 7 C -0.243 4.243 8 N -0.580 5.580 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.234 1.234 12 H -0.210 1.210 13 C 0.071 3.929 14 H 0.079 0.921 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.179 4.179 18 C 0.052 3.948 19 H 0.072 0.928 20 O -0.387 6.387 21 C -0.153 4.153 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.239 0.761 32 H 0.034 0.966 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.018 -11.831 -2.265 13.942 hybrid contribution 0.152 0.567 1.144 1.286 sum 7.170 -11.264 -1.121 13.400 Atomic orbital electron populations 1.80768 1.15912 1.13033 1.13751 1.31294 0.97051 0.89022 0.88345 1.18587 0.78672 0.98451 0.91692 1.44501 1.73629 1.02245 1.10728 1.19389 1.24335 0.98177 0.95620 0.89834 1.25474 0.97143 1.00514 1.01200 1.70070 1.23261 1.17104 1.47592 0.85420 0.78758 0.77474 0.79222 1.19801 1.23364 1.21031 1.20511 0.94295 0.81314 0.96779 0.92123 1.21804 0.96098 0.96048 1.01473 1.21403 0.99636 0.93747 0.99608 1.22177 0.94304 1.01038 1.00409 1.21729 0.95009 0.94212 0.83831 0.92785 1.86553 1.89380 1.31259 1.31492 1.21850 0.98574 0.94161 1.00702 0.88317 0.88236 0.94344 0.93078 0.92015 0.90625 0.91435 0.91288 0.89321 0.76146 0.96560 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -30.13 18.54 20.01 0.37 -29.76 16 2 C 0.26 13.13 13.67 89.44 1.22 14.35 16 3 C 0.26 11.19 5.35 84.57 0.45 11.65 16 4 N -0.59 -26.41 2.43 -688.52 -1.67 -28.08 16 5 C -0.25 -12.03 8.37 84.03 0.70 -11.33 16 6 H 0.08 3.97 6.89 -2.91 -0.02 3.95 16 7 C -0.05 -2.52 4.85 84.86 0.41 -2.10 16 8 N -0.93 -52.50 9.50 21.65 0.21 -52.30 16 9 Si 0.96 42.88 29.61 68.60 2.03 44.91 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 C 0.18 6.62 2.47 44.99 0.11 6.73 16 14 H 0.06 2.30 7.41 -2.39 -0.02 2.28 16 15 C -0.12 -3.52 5.17 30.59 0.16 -3.36 16 16 C -0.11 -2.42 5.78 30.59 0.18 -2.25 16 17 C -0.14 -3.04 5.64 30.59 0.17 -2.86 16 18 C 0.11 3.07 3.77 30.58 0.12 3.19 16 19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 20 O -0.58 -15.59 11.97 -148.98 -1.78 -17.37 16 21 C -0.11 -4.31 4.91 30.58 0.15 -4.16 16 22 H 0.10 4.62 6.44 -2.39 -0.02 4.60 16 23 H 0.10 3.47 8.04 -2.39 -0.02 3.45 16 24 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 25 H 0.05 1.68 7.01 -2.39 -0.02 1.67 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.52 7.68 -2.38 -0.02 1.50 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.39 6.25 9.08 -74.06 -0.67 5.58 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 2.52 7.64 -2.39 -0.02 2.50 16 Total: -1.00 -65.29 270.72 3.26 -62.03 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.44 Total: 10.72 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 3.67 Total: 9.85 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -1.10 Total: -110.14 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.78 Total: -17.37 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -65.29 3.26 -62.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712832525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.989 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds