Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48496 * 109.47706 * 270.00209 * 3 2 1 5 5 H 1.48499 * 109.47358 * 30.00468 * 3 2 1 6 6 H 1.48500 * 109.47176 * 149.99953 * 3 2 1 7 7 C 1.37878 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99904 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00142 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.53005 * 119.29752 * 109.76700 * 13 11 10 15 15 C 1.53004 * 60.34832 * 111.32058 * 14 13 11 16 16 H 1.09006 * 119.29686 * 248.68593 * 15 14 13 17 17 C 1.54267 * 118.19840 * 93.60355 * 15 14 13 18 18 C 1.54889 * 104.19437 * 319.43279 * 17 15 14 19 19 H 1.09000 * 110.75345 * 80.37772 * 18 17 15 20 20 N 1.46900 * 110.74985 * 203.55686 * 18 17 15 21 21 C 1.54259 * 117.41423 * 315.42731 * 13 11 10 22 22 H 0.96998 * 120.00148 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47348 * 59.99984 * 9 7 2 24 24 H 1.08999 * 109.46825 * 299.99461 * 9 7 2 25 25 H 0.97001 * 119.99717 * 359.97438 * 10 9 7 26 26 H 1.09002 * 117.46173 * 218.90708 * 14 13 11 27 27 H 1.09003 * 117.46029 * 3.73582 * 14 13 11 28 28 H 1.08999 * 110.48329 * 78.11593 * 17 15 14 29 29 H 1.08996 * 110.48308 * 200.75297 * 17 15 14 30 30 H 1.00897 * 111.00573 * 298.54797 * 20 18 17 31 31 H 1.00903 * 111.00496 * 62.50702 * 20 18 17 32 32 H 1.09003 * 110.48690 * 313.87430 * 21 13 11 33 33 H 1.08997 * 110.48945 * 76.51695 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 1.7539 -4.8833 -0.0019 12 8 0.5615 -5.1050 -0.0019 13 6 2.7331 -6.0287 -0.0022 14 6 2.8766 -6.8915 1.2533 15 6 2.2544 -7.4904 -0.0097 16 1 1.1932 -7.7393 -0.0150 17 6 3.1756 -8.2504 -0.9863 18 6 4.4700 -7.4007 -1.0265 19 1 5.0971 -7.6108 -0.1600 20 7 5.2105 -7.6389 -2.2726 21 6 3.9361 -5.9344 -0.9632 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8881 25 1 3.1567 -3.4354 -0.0010 26 1 3.8795 -7.2213 1.5246 27 1 2.2103 -6.6776 2.0890 28 1 3.3877 -9.2511 -0.6100 29 1 2.7223 -8.3022 -1.9761 30 1 5.4920 -8.6050 -2.3470 31 1 4.6677 -7.3577 -3.0753 32 1 3.6092 -5.6182 -1.9538 33 1 4.6853 -5.2471 -0.5703 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713050513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -24.470081 kcal Electronic energy + Delta-G solvation = -15236.588681 eV Core-core repulsion = 12683.155418 eV Total energy + Delta-G solvation = -2553.433263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.35480 -37.81736 -34.30487 -33.91398 -32.30685 -28.80998 -28.40739 -27.06311 -23.81737 -22.44440 -20.97652 -19.66635 -18.86876 -17.24023 -16.41516 -15.96641 -15.09832 -14.68172 -14.47746 -14.25408 -13.73996 -13.42552 -13.22912 -12.91539 -12.08509 -11.87912 -11.75155 -11.68555 -11.48775 -11.04916 -10.98225 -10.88222 -10.31584 -10.25363 -9.56077 -9.36706 -8.97562 -8.86414 -8.72531 -7.86633 -6.15798 -4.22660 3.14355 3.25300 3.31300 3.33953 3.81457 4.04808 4.21297 4.36701 4.49008 4.64428 4.99205 5.06028 5.17609 5.20336 5.30334 5.35048 5.54866 5.72436 5.77056 5.79127 5.98583 6.12762 6.16775 6.26228 6.93333 7.23211 7.31657 7.45562 7.52016 7.68402 7.97875 8.65583 8.79372 9.12534 9.44148 10.94512 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.005901 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.676612 B = 4743.601823 C = 5150.215813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.705 5.705 11 C 0.539 3.461 12 O -0.558 6.558 13 C -0.172 4.172 14 C -0.125 4.125 15 C -0.133 4.133 16 H 0.118 0.882 17 C -0.129 4.129 18 C 0.082 3.918 19 H 0.090 0.910 20 N -0.840 5.840 21 C -0.076 4.076 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.391 0.609 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.341 0.659 31 H 0.342 0.658 32 H 0.076 0.924 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 -14.572 -1.327 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.324 3.676 12 O -0.438 6.438 13 C -0.176 4.176 14 C -0.163 4.163 15 C -0.152 4.152 16 H 0.136 0.864 17 C -0.168 4.168 18 C -0.029 4.029 19 H 0.108 0.892 20 N -0.369 5.369 21 C -0.114 4.114 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.224 0.776 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.068 -14.019 -1.061 16.730 hybrid contribution -0.080 0.453 -0.241 0.519 sum 8.988 -13.565 -1.302 16.325 Atomic orbital electron populations 1.69976 1.06131 1.27296 1.48974 1.24953 0.94909 0.99461 0.94684 0.86406 0.79636 0.82595 0.78237 1.20443 1.21007 1.19710 1.21226 0.93292 0.90413 1.53142 0.91858 1.19123 0.88344 0.82009 0.97707 1.46388 1.11180 1.05825 1.71785 1.19192 0.87887 0.83418 0.77132 1.90648 1.16585 1.84911 1.51621 1.22337 0.99736 0.92970 1.02548 1.22932 1.02322 0.99995 0.91019 1.23059 1.00294 0.93194 0.98632 0.86398 1.22774 0.96225 0.98975 0.98872 1.22688 0.92198 0.94782 0.93273 0.89169 1.58783 1.46957 1.26996 1.04132 1.22052 0.94794 0.96081 0.98445 0.92456 0.95563 0.95554 0.77584 0.88318 0.87799 0.91219 0.90945 0.84676 0.84490 0.90521 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 10 N -0.70 -15.41 5.49 -61.47 -0.34 -15.75 16 11 C 0.54 11.29 7.47 -10.99 -0.08 11.21 16 12 O -0.56 -13.99 16.79 5.55 0.09 -13.89 16 13 C -0.17 -2.62 2.77 -154.58 -0.43 -3.05 16 14 C -0.13 -1.60 9.61 -26.73 -0.26 -1.85 16 15 C -0.13 -1.75 6.66 -89.53 -0.60 -2.35 16 16 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 17 C -0.13 -1.31 6.46 -25.07 -0.16 -1.47 16 18 C 0.08 0.83 3.57 -65.02 -0.23 0.60 16 19 H 0.09 0.87 7.38 -51.93 -0.38 0.49 16 20 N -0.84 -7.53 9.40 -2.39 -0.02 -7.55 16 21 C -0.08 -0.96 5.93 -24.37 -0.14 -1.11 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.39 7.49 8.04 -40.82 -0.33 7.16 16 26 H 0.10 1.01 7.21 -51.93 -0.37 0.64 16 27 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.34 2.38 9.07 -39.29 -0.36 2.03 16 31 H 0.34 2.93 8.89 -39.29 -0.35 2.58 16 32 H 0.08 1.04 8.01 -51.93 -0.42 0.62 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -32.15 279.97 -7.38 -39.53 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.70 Total: 7.95 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.35 Total: -4.88 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.38 Total: -48.94 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.15 -7.38 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713050513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.058 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds