Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48496 * 109.47706 * 270.00209 * 3 2 1 5 5 H 1.48499 * 109.47358 * 30.00468 * 3 2 1 6 6 H 1.48500 * 109.47176 * 149.99953 * 3 2 1 7 7 C 1.37878 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99904 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00142 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.53005 * 119.29752 * 109.76700 * 13 11 10 15 15 C 1.53004 * 60.34832 * 111.32058 * 14 13 11 16 16 H 1.09006 * 119.29686 * 248.68593 * 15 14 13 17 17 C 1.54267 * 118.19840 * 93.60355 * 15 14 13 18 18 C 1.54889 * 104.19437 * 319.43279 * 17 15 14 19 19 H 1.09000 * 110.75345 * 80.37772 * 18 17 15 20 20 N 1.46900 * 110.74985 * 203.55686 * 18 17 15 21 21 C 1.54259 * 117.41423 * 315.42731 * 13 11 10 22 22 H 0.96998 * 120.00148 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47348 * 59.99984 * 9 7 2 24 24 H 1.08999 * 109.46825 * 299.99461 * 9 7 2 25 25 H 0.97001 * 119.99717 * 359.97438 * 10 9 7 26 26 H 1.09002 * 117.46173 * 218.90708 * 14 13 11 27 27 H 1.09003 * 117.46029 * 3.73582 * 14 13 11 28 28 H 1.08999 * 110.48329 * 78.11593 * 17 15 14 29 29 H 1.08996 * 110.48308 * 200.75297 * 17 15 14 30 30 H 1.00897 * 111.00573 * 298.54797 * 20 18 17 31 31 H 1.00903 * 111.00496 * 62.50702 * 20 18 17 32 32 H 1.09003 * 110.48690 * 313.87430 * 21 13 11 33 33 H 1.08997 * 110.48945 * 76.51695 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 1.7539 -4.8833 -0.0019 12 8 0.5615 -5.1050 -0.0019 13 6 2.7331 -6.0287 -0.0022 14 6 2.8766 -6.8915 1.2533 15 6 2.2544 -7.4904 -0.0097 16 1 1.1932 -7.7393 -0.0150 17 6 3.1756 -8.2504 -0.9863 18 6 4.4700 -7.4007 -1.0265 19 1 5.0971 -7.6108 -0.1600 20 7 5.2105 -7.6389 -2.2726 21 6 3.9361 -5.9344 -0.9632 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8881 25 1 3.1567 -3.4354 -0.0010 26 1 3.8795 -7.2213 1.5246 27 1 2.2103 -6.6776 2.0890 28 1 3.3877 -9.2511 -0.6100 29 1 2.7223 -8.3022 -1.9761 30 1 5.4920 -8.6050 -2.3470 31 1 4.6677 -7.3577 -3.0753 32 1 3.6092 -5.6182 -1.9538 33 1 4.6853 -5.2471 -0.5703 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713050513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -49.569771 kcal Electronic energy + Delta-G solvation = -15237.677085 eV Core-core repulsion = 12683.155418 eV Total energy + Delta-G solvation = -2554.521667 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.60519 -39.38904 -36.21836 -34.90341 -34.38235 -30.21334 -29.27470 -28.78651 -25.49226 -23.89326 -22.49530 -20.57419 -20.51189 -18.76404 -17.81651 -17.29165 -16.90232 -16.36105 -16.13679 -15.53773 -14.88681 -14.66931 -14.32223 -14.16888 -14.07234 -13.80034 -13.07417 -12.95781 -12.72856 -12.69950 -12.42423 -12.25110 -11.96321 -11.53019 -11.38352 -10.83195 -10.70353 -10.57389 -9.89198 -9.56923 -8.31735 -6.49061 1.42047 1.44746 1.56185 1.57702 2.28554 2.49836 2.68048 3.03082 3.31257 3.46227 3.75191 3.83789 4.09833 4.20691 4.25560 4.36912 4.53379 4.72736 4.83980 4.91529 4.95939 5.04590 5.13504 5.17695 5.23444 5.30695 5.44662 5.64368 5.80870 6.25289 6.61254 6.64807 6.85352 7.19934 7.42251 8.80728 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.005901 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.676612 B = 4743.601823 C = 5150.215813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.265 3.735 10 N -0.699 5.699 11 C 0.533 3.467 12 O -0.609 6.609 13 C -0.192 4.192 14 C -0.105 4.105 15 C -0.129 4.129 16 H 0.096 0.904 17 C -0.119 4.119 18 C 0.097 3.903 19 H 0.107 0.893 20 N -0.843 5.843 21 C -0.073 4.073 22 H 0.270 0.730 23 H -0.014 1.014 24 H -0.013 1.013 25 H 0.407 0.593 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.355 0.645 31 H 0.344 0.656 32 H 0.062 0.938 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.714 -15.324 -1.283 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.143 3.857 10 N -0.347 5.347 11 C 0.321 3.679 12 O -0.492 6.492 13 C -0.196 4.196 14 C -0.142 4.142 15 C -0.148 4.148 16 H 0.114 0.886 17 C -0.158 4.158 18 C -0.016 4.016 19 H 0.125 0.875 20 N -0.373 5.373 21 C -0.111 4.111 22 H 0.078 0.922 23 H 0.004 0.996 24 H 0.005 0.995 25 H 0.243 0.757 26 H 0.155 0.845 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.280 -14.811 -1.024 19.267 hybrid contribution -1.158 0.628 -0.258 1.342 sum 11.123 -14.184 -1.282 18.070 Atomic orbital electron populations 1.70139 1.08346 1.28665 1.49860 1.26093 0.95790 1.03985 0.93673 0.85120 0.78479 0.76725 0.78682 1.19496 1.20804 1.17865 1.21592 0.94273 0.90471 1.53137 0.89857 1.18576 0.88719 0.84454 0.93987 1.46143 1.11137 1.05329 1.72140 1.20248 0.88371 0.84272 0.75019 1.90612 1.19346 1.85682 1.53512 1.22225 0.99997 0.91491 1.05839 1.23071 1.03964 0.97452 0.89727 1.23224 1.00184 0.91737 0.99675 0.88574 1.22789 0.95307 0.99852 0.97880 1.22578 0.92235 0.92280 0.94461 0.87523 1.58763 1.46602 1.28222 1.03726 1.22058 0.93660 0.98532 0.96821 0.92166 0.99607 0.99517 0.75710 0.84493 0.89031 0.88507 0.91081 0.83050 0.84297 0.91965 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.99 42.86 29.54 68.60 2.03 44.89 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.56 -31.13 9.28 25.60 0.24 -30.89 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 15.18 5.43 85.63 0.46 15.65 16 10 N -0.70 -31.64 5.49 -466.80 -2.56 -34.20 16 11 C 0.53 23.16 7.47 87.66 0.66 23.82 16 12 O -0.61 -32.37 16.79 -3.04 -0.05 -32.42 16 13 C -0.19 -5.70 2.77 -52.23 -0.14 -5.85 16 14 C -0.11 -2.45 9.61 30.60 0.29 -2.16 16 15 C -0.13 -3.23 6.66 -10.09 -0.07 -3.29 16 16 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 17 C -0.12 -2.04 6.46 31.67 0.20 -1.84 16 18 C 0.10 1.60 3.57 46.66 0.17 1.77 16 19 H 0.11 1.51 7.38 -2.39 -0.02 1.49 16 20 N -0.84 -12.25 9.40 -161.48 -1.52 -13.77 16 21 C -0.07 -1.71 5.93 32.12 0.19 -1.52 16 22 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 23 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 25 H 0.41 15.61 8.04 -92.71 -0.75 14.87 16 26 H 0.14 2.18 7.21 -2.39 -0.02 2.17 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.35 3.59 9.07 -89.70 -0.81 2.78 16 31 H 0.34 4.98 8.89 -89.69 -0.80 4.18 16 32 H 0.06 1.63 8.01 -2.39 -0.02 1.61 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.32 279.97 -0.58 -73.90 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -1.22 Total: 22.07 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 2.46 Total: -3.62 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.80 Total: -104.82 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.32 -0.58 -73.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713050513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.330 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds