Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.48528 * 110.99818 * 69.87535 * 14 13 11 16 16 C 1.54942 * 103.22992 * 159.64512 * 15 14 13 17 17 C 1.54551 * 102.94127 * 322.53375 * 16 15 14 18 18 H 1.08995 * 117.57947 * 242.97821 * 17 16 15 19 19 C 1.52947 * 118.19701 * 87.43967 * 17 16 15 20 20 C 1.47950 * 110.99906 * 187.24319 * 14 13 11 21 21 H 1.09001 * 117.37003 * 354.64852 * 20 14 13 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.08999 * 110.66842 * 278.08426 * 15 14 13 29 29 H 1.08995 * 110.67298 * 41.04661 * 15 14 13 30 30 H 1.09005 * 110.71863 * 80.89713 * 16 15 14 31 31 H 1.08996 * 110.72189 * 203.99003 * 16 15 14 32 32 H 1.08998 * 117.45582 * 15.87329 * 19 17 16 33 33 H 1.08999 * 117.45224 * 160.64802 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 1.3210 -7.5241 -1.2995 16 6 1.0763 -9.0540 -1.3144 17 6 2.3514 -9.6150 -0.6451 18 1 2.9941 -10.2596 -1.2445 19 6 2.3731 -9.7378 0.8793 20 6 2.9200 -8.4451 0.1791 21 1 3.9886 -8.2304 0.1933 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.3612 -5.9713 -0.8858 27 1 3.3585 -5.9707 0.8942 28 1 0.3757 -6.9829 -1.3390 29 1 1.9674 -7.2273 -2.1253 30 1 0.1909 -9.3086 -0.7317 31 1 0.9815 -9.4194 -2.3369 32 1 1.4183 -9.6800 1.4018 33 1 3.1087 -10.4115 1.3187 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761096322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = 0.863719 kcal Electronic energy + Delta-G solvation = -15041.686941 eV Core-core repulsion = 12489.352234 eV Total energy + Delta-G solvation = -2552.334707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85083 -38.29847 -34.19983 -33.31659 -32.29482 -30.48311 -27.82434 -25.67024 -23.22475 -22.39131 -20.65737 -20.20132 -19.61657 -17.17553 -16.35722 -15.75713 -14.99405 -14.96135 -14.67502 -14.11601 -13.66546 -13.31489 -12.97168 -12.73090 -12.33851 -11.98085 -11.70206 -11.68347 -11.24756 -10.98388 -10.93207 -10.81106 -10.39177 -10.28929 -10.05984 -9.36493 -8.96861 -8.72346 -8.13709 -7.83131 -6.15702 -4.22510 3.23924 3.30649 3.33389 3.35542 3.42888 3.76164 4.28084 4.46248 4.61472 4.70674 4.93396 5.08256 5.20194 5.20915 5.38443 5.47511 5.49005 5.59141 5.67013 5.75784 5.82363 6.00037 6.19147 6.24456 6.92722 7.04254 7.34950 7.48369 7.54358 7.69724 7.98625 8.66555 8.81154 9.16124 9.44479 10.94601 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.074734 B = 0.004788 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.572128 B = 5846.026274 C = 6019.742671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.716 5.716 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.029 3.971 14 N -0.473 5.473 15 C 0.040 3.960 16 C -0.096 4.096 17 C -0.178 4.178 18 H 0.108 0.892 19 C -0.139 4.139 20 C -0.016 4.016 21 H 0.112 0.888 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.389 0.611 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -16.064 -1.599 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.365 5.365 11 C 0.283 3.717 12 O -0.417 6.417 13 C -0.102 4.102 14 N -0.197 5.197 15 C -0.087 4.087 16 C -0.134 4.134 17 C -0.197 4.197 18 H 0.126 0.874 19 C -0.177 4.177 20 C -0.125 4.125 21 H 0.129 0.871 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.221 0.779 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.255 -15.998 -1.189 17.218 hybrid contribution 1.604 1.087 -0.642 2.041 sum 7.858 -14.911 -1.830 16.954 Atomic orbital electron populations 1.69985 1.06115 1.27172 1.49031 1.24956 0.94903 0.99450 0.94725 0.86365 0.79821 0.82993 0.77751 1.19649 1.20809 1.20785 1.21274 0.93291 0.90483 1.53034 0.91873 1.19085 0.88298 0.81921 0.97686 1.46436 1.11032 1.06066 1.72966 1.20255 0.89528 0.84038 0.77875 1.90639 1.16640 1.84626 1.49786 1.22170 0.95631 0.89842 1.02595 1.63897 1.24847 0.99222 1.31697 1.23581 1.00526 0.95595 0.88979 1.22124 0.96588 0.94430 1.00253 1.23632 1.00042 1.02342 0.93707 0.87433 1.23696 1.02978 0.97455 0.93556 1.24191 0.95146 0.86306 1.06837 0.87055 0.92509 0.95644 0.95543 0.77857 0.92277 0.88284 0.88149 0.94053 0.90566 0.90786 0.88297 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 10 N -0.72 -15.27 5.55 -61.47 -0.34 -15.61 16 11 C 0.50 10.21 7.63 -10.98 -0.08 10.12 16 12 O -0.54 -13.25 14.85 5.56 0.08 -13.16 16 13 C 0.03 0.44 5.30 -4.97 -0.03 0.42 16 14 N -0.47 -7.21 4.93 -221.50 -1.09 -8.30 16 15 C 0.04 0.58 5.86 -1.90 -0.01 0.57 16 16 C -0.10 -1.11 6.85 -24.89 -0.17 -1.28 16 17 C -0.18 -1.86 6.91 -89.32 -0.62 -2.47 16 18 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 19 C -0.14 -1.43 10.44 -24.67 -0.26 -1.69 16 20 C -0.02 -0.19 6.66 -64.53 -0.43 -0.62 16 21 H 0.11 1.13 7.98 -51.93 -0.41 0.71 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 26 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 27 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 28 H 0.10 1.74 6.92 -51.93 -0.36 1.38 16 29 H 0.04 0.57 7.85 -51.93 -0.41 0.16 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -32.27 279.26 -8.31 -40.58 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.84 Total: 3.66 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.04 Total: -1.73 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.70 Total: -49.47 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.27 -8.31 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761096322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.448 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds