Wall clock time and date at job start Mon Mar 30 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.48528 * 110.99818 * 69.87535 * 14 13 11 16 16 C 1.54942 * 103.22992 * 159.64512 * 15 14 13 17 17 C 1.54551 * 102.94127 * 322.53375 * 16 15 14 18 18 H 1.08995 * 117.57947 * 242.97821 * 17 16 15 19 19 C 1.52947 * 118.19701 * 87.43967 * 17 16 15 20 20 C 1.47950 * 110.99906 * 187.24319 * 14 13 11 21 21 H 1.09001 * 117.37003 * 354.64852 * 20 14 13 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.08999 * 110.66842 * 278.08426 * 15 14 13 29 29 H 1.08995 * 110.67298 * 41.04661 * 15 14 13 30 30 H 1.09005 * 110.71863 * 80.89713 * 16 15 14 31 31 H 1.08996 * 110.72189 * 203.99003 * 16 15 14 32 32 H 1.08998 * 117.45582 * 15.87329 * 19 17 16 33 33 H 1.08999 * 117.45224 * 160.64802 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 1.3210 -7.5241 -1.2995 16 6 1.0763 -9.0540 -1.3144 17 6 2.3514 -9.6150 -0.6451 18 1 2.9941 -10.2596 -1.2445 19 6 2.3731 -9.7378 0.8793 20 6 2.9200 -8.4451 0.1791 21 1 3.9886 -8.2304 0.1933 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.3612 -5.9713 -0.8858 27 1 3.3585 -5.9707 0.8942 28 1 0.3757 -6.9829 -1.3390 29 1 1.9674 -7.2273 -2.1253 30 1 0.1909 -9.3086 -0.7317 31 1 0.9815 -9.4194 -2.3369 32 1 1.4183 -9.6800 1.4018 33 1 3.1087 -10.4115 1.3187 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761096322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:44 Heat of formation + Delta-G solvation = -23.510748 kcal Electronic energy + Delta-G solvation = -15042.743897 eV Core-core repulsion = 12489.352234 eV Total energy + Delta-G solvation = -2553.391663 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04841 -39.79613 -36.14721 -34.50748 -34.29211 -31.52619 -29.69377 -27.19697 -24.50506 -24.05768 -21.71408 -21.29959 -21.07516 -18.96408 -17.60856 -17.46337 -16.78405 -16.47432 -15.98748 -15.69045 -15.00243 -14.50833 -14.44755 -14.03527 -13.97050 -13.73734 -13.15862 -12.88954 -12.75449 -12.69967 -12.35220 -12.22063 -11.87864 -11.46372 -11.32112 -10.90949 -10.81865 -10.63789 -9.81986 -9.18730 -8.29791 -6.46709 1.42981 1.44372 1.57886 1.78647 2.22951 2.40999 2.62534 3.05194 3.15146 3.73464 3.75789 3.97569 4.09624 4.23451 4.26151 4.39266 4.42415 4.48074 4.74534 4.93973 4.96506 5.05247 5.11113 5.12914 5.23151 5.37646 5.48924 5.69135 5.84025 5.86171 6.06839 6.64915 6.94355 7.23196 7.52663 8.82836 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.074734 B = 0.004788 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.572128 B = 5846.026274 C = 6019.742671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.268 3.732 10 N -0.709 5.709 11 C 0.494 3.506 12 O -0.588 6.588 13 C 0.045 3.955 14 N -0.504 5.504 15 C 0.037 3.963 16 C -0.094 4.094 17 C -0.166 4.166 18 H 0.135 0.865 19 C -0.135 4.135 20 C -0.030 4.030 21 H 0.137 0.863 22 H 0.269 0.731 23 H -0.015 1.015 24 H -0.016 1.016 25 H 0.408 0.592 26 H 0.089 0.911 27 H 0.127 0.873 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.902 -16.878 -1.723 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.145 3.855 10 N -0.360 5.360 11 C 0.280 3.720 12 O -0.468 6.468 13 C -0.087 4.087 14 N -0.228 5.228 15 C -0.090 4.090 16 C -0.132 4.132 17 C -0.185 4.185 18 H 0.153 0.847 19 C -0.173 4.173 20 C -0.138 4.138 21 H 0.154 0.846 22 H 0.077 0.923 23 H 0.003 0.997 24 H 0.002 0.998 25 H 0.244 0.756 26 H 0.107 0.893 27 H 0.144 0.856 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.528 -16.850 -1.310 19.401 hybrid contribution 0.518 1.269 -0.594 1.494 sum 10.046 -15.581 -1.904 18.636 Atomic orbital electron populations 1.70150 1.08366 1.28523 1.50077 1.26094 0.95767 1.04001 0.93817 0.85086 0.79103 0.77184 0.77677 1.17520 1.20430 1.20469 1.21660 0.94349 0.90521 1.52769 0.89696 1.18512 0.88711 0.84431 0.93875 1.46168 1.11158 1.05430 1.73269 1.21360 0.89974 0.84809 0.75826 1.90623 1.19345 1.85331 1.51529 1.22071 0.93955 0.87454 1.05173 1.63797 1.26591 1.00323 1.32090 1.23496 0.98845 0.97299 0.89370 1.22104 0.97097 0.92400 1.01609 1.23703 0.99085 1.01761 0.93953 0.84718 1.23802 1.02879 0.96998 0.93580 1.24361 0.95670 0.85311 1.08487 0.84607 0.92251 0.99661 0.99758 0.75598 0.89332 0.85561 0.92354 0.93246 0.91794 0.88710 0.90095 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 42.55 29.54 68.60 2.03 44.57 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.55 9.28 25.60 0.24 -30.31 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.04 5.43 85.63 0.46 15.50 16 10 N -0.71 -30.61 5.55 -466.78 -2.59 -33.20 16 11 C 0.49 20.51 7.63 87.66 0.67 21.18 16 12 O -0.59 -30.48 14.85 -3.03 -0.04 -30.53 16 13 C 0.04 1.27 5.30 85.56 0.45 1.72 16 14 N -0.50 -14.81 4.93 -854.71 -4.21 -19.02 16 15 C 0.04 1.08 5.86 86.65 0.51 1.59 16 16 C -0.09 -2.07 6.85 31.79 0.22 -1.85 16 17 C -0.17 -2.94 6.91 -9.95 -0.07 -3.01 16 18 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.13 -2.40 10.44 31.93 0.33 -2.06 16 20 C -0.03 -0.62 6.66 46.40 0.31 -0.31 16 21 H 0.14 2.13 7.98 -2.39 -0.02 2.11 16 22 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 23 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 24 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 25 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 26 H 0.09 2.03 7.90 -2.39 -0.02 2.02 16 27 H 0.13 2.92 8.11 -2.39 -0.02 2.90 16 28 H 0.06 2.16 6.92 -2.39 -0.02 2.15 16 29 H 0.05 1.32 7.85 -2.39 -0.02 1.30 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -73.90 279.26 -0.62 -74.52 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.33 Total: 17.34 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 3.59 Total: 3.05 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -6.52 Total: -108.96 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -73.90 -0.62 -74.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761096322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.013 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds