Wall clock time and date at job start Mon Mar 30 2020 03:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48498 * 109.47072 * 270.00145 * 3 2 1 5 5 H 1.48497 * 109.46892 * 30.00326 * 3 2 1 6 6 H 1.48497 * 109.47079 * 150.00162 * 3 2 1 7 7 C 1.37872 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.52357 * 115.89416 * 137.16159 * 13 11 10 15 15 C 1.51270 * 60.17537 * 106.14657 * 14 13 11 16 16 H 1.08997 * 116.45965 * 252.11130 * 15 14 13 17 17 C 1.52780 * 117.55162 * 110.45416 * 15 14 13 18 18 C 1.53069 * 109.83873 * 271.79077 * 17 15 14 19 19 C 1.53312 * 108.34931 * 51.64980 * 18 17 15 20 20 N 1.45862 * 114.62668 * 350.85700 * 13 11 10 21 21 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 23 23 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 24 24 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 25 25 H 1.09003 * 117.52819 * 213.87934 * 14 13 11 26 26 H 1.08999 * 117.53255 * 359.08911 * 14 13 11 27 27 H 1.09000 * 110.17799 * 151.13252 * 17 15 14 28 28 H 1.09003 * 108.41978 * 31.36337 * 17 15 14 29 29 H 1.09000 * 109.69059 * 291.93101 * 18 17 15 30 30 H 1.09006 * 109.68915 * 171.35964 * 18 17 15 31 31 H 1.09000 * 109.57454 * 166.51794 * 19 18 17 32 32 H 1.08996 * 109.58445 * 46.11945 * 19 18 17 33 33 H 1.00897 * 110.99808 * 68.38464 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 -0.0052 14 6 2.4063 -7.1887 0.9268 15 6 2.2135 -7.3452 -0.5654 16 1 1.1839 -7.3662 -0.9225 17 6 3.1631 -8.2855 -1.3059 18 6 4.4111 -7.5189 -1.7507 19 6 4.9851 -6.7837 -0.5339 20 7 4.1222 -5.6396 -0.2221 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 3.1569 -3.4354 0.0009 25 1 3.2419 -7.7161 1.3871 26 1 1.5074 -7.1063 1.5377 27 1 2.6671 -8.7096 -2.1789 28 1 3.4523 -9.0877 -0.6270 29 1 4.1434 -6.7978 -2.5229 30 1 5.1516 -8.2174 -2.1406 31 1 5.9911 -6.4312 -0.7614 32 1 5.0174 -7.4603 0.3200 33 1 4.4799 -5.1213 0.5662 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885619884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:46 Heat of formation + Delta-G solvation = -21.623986 kcal Electronic energy + Delta-G solvation = -15441.577024 eV Core-core repulsion = 12888.267177 eV Total energy + Delta-G solvation = -2553.309847 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41116 -37.73833 -34.33718 -33.12045 -32.52989 -31.82945 -27.43095 -25.63182 -24.16806 -22.18391 -21.63952 -19.97442 -18.46950 -17.91520 -16.11001 -15.46818 -15.29035 -14.63752 -14.46361 -14.06851 -13.79277 -13.68150 -13.58450 -12.82647 -12.23191 -11.92291 -11.86905 -11.46749 -11.18460 -10.95137 -10.87959 -10.74287 -10.51902 -10.28468 -10.02698 -9.35479 -9.06815 -8.68910 -8.31008 -7.80194 -6.12621 -4.19055 3.06049 3.27430 3.33156 3.35806 3.93278 4.06874 4.12985 4.38817 4.66307 4.74110 4.92915 5.02026 5.10662 5.23568 5.36202 5.45398 5.51930 5.73024 5.79006 5.86769 5.97541 6.08637 6.16646 6.30449 6.91450 7.24310 7.36431 7.51393 7.56235 7.73483 8.01611 8.71683 8.82673 9.16919 9.47534 10.97739 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045694 B = 0.006179 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.624778 B = 4530.185987 C = 4916.707728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.697 5.697 11 C 0.540 3.460 12 O -0.559 6.559 13 C 0.035 3.965 14 C -0.190 4.190 15 C -0.115 4.115 16 H 0.117 0.883 17 C -0.092 4.092 18 C -0.121 4.121 19 C 0.059 3.941 20 N -0.649 5.649 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.396 0.604 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -14.154 -0.411 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.344 5.344 11 C 0.323 3.677 12 O -0.439 6.439 13 C -0.061 4.061 14 C -0.230 4.230 15 C -0.134 4.134 16 H 0.135 0.865 17 C -0.130 4.130 18 C -0.159 4.159 19 C -0.070 4.070 20 N -0.281 5.281 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.229 0.771 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.199 -13.956 -1.061 16.749 hybrid contribution 0.927 0.650 0.896 1.444 sum 10.126 -13.306 -0.165 16.721 Atomic orbital electron populations 1.69976 1.06114 1.27240 1.49121 1.24951 0.94903 0.99431 0.94756 0.86409 0.79606 0.82640 0.78220 1.20461 1.21062 1.19742 1.21234 0.93316 0.90404 1.52929 0.91835 1.19131 0.88385 0.82068 0.97685 1.46333 1.11481 1.05615 1.71014 1.19160 0.87647 0.83529 0.77316 1.90657 1.16058 1.84689 1.52449 1.21221 0.89565 0.89705 1.05618 1.23280 1.03883 1.02104 0.93741 1.22015 1.01181 0.94656 0.95584 0.86519 1.21175 0.95327 0.96705 0.99757 1.21680 0.96855 0.99224 0.98136 1.21977 0.96311 0.91538 0.97127 1.59365 0.99498 1.24446 1.44790 0.92498 0.95539 0.95571 0.77064 0.88636 0.87799 0.90963 0.91759 0.90345 0.91288 0.90103 0.94923 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 8 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 N -0.70 -15.52 5.52 -61.47 -0.34 -15.86 16 11 C 0.54 11.50 7.50 -10.98 -0.08 11.42 16 12 O -0.56 -13.95 16.17 5.55 0.09 -13.86 16 13 C 0.03 0.55 3.02 -134.04 -0.41 0.15 16 14 C -0.19 -2.61 9.15 -27.93 -0.26 -2.87 16 15 C -0.12 -1.63 5.54 -92.00 -0.51 -2.14 16 16 H 0.12 1.85 7.73 -51.93 -0.40 1.45 16 17 C -0.09 -0.99 5.94 -26.81 -0.16 -1.15 16 18 C -0.12 -1.24 6.07 -26.53 -0.16 -1.41 16 19 C 0.06 0.61 6.36 -3.80 -0.02 0.59 16 20 N -0.65 -8.61 5.85 -102.57 -0.60 -9.21 16 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.40 7.79 7.16 -40.82 -0.29 7.49 16 25 H 0.10 1.09 7.17 -51.93 -0.37 0.72 16 26 H 0.10 1.56 8.12 -51.93 -0.42 1.14 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.31 6.97 -51.93 -0.36 -0.05 16 33 H 0.35 4.22 8.54 -39.29 -0.34 3.89 16 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -31.91 273.96 -7.72 -39.63 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.67 Total: 7.12 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.04 Total: -2.27 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.20 Total: -50.84 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.91 -7.72 -39.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885619884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.004 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds