Wall clock time and date at job start Mon Mar 30 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48498 * 109.47072 * 270.00145 * 3 2 1 5 5 H 1.48497 * 109.46892 * 30.00326 * 3 2 1 6 6 H 1.48497 * 109.47079 * 150.00162 * 3 2 1 7 7 C 1.37872 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.52357 * 115.89416 * 137.16159 * 13 11 10 15 15 C 1.51270 * 60.17537 * 106.14657 * 14 13 11 16 16 H 1.08997 * 116.45965 * 252.11130 * 15 14 13 17 17 C 1.52780 * 117.55162 * 110.45416 * 15 14 13 18 18 C 1.53069 * 109.83873 * 271.79077 * 17 15 14 19 19 C 1.53312 * 108.34931 * 51.64980 * 18 17 15 20 20 N 1.45862 * 114.62668 * 350.85700 * 13 11 10 21 21 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 23 23 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 24 24 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 25 25 H 1.09003 * 117.52819 * 213.87934 * 14 13 11 26 26 H 1.08999 * 117.53255 * 359.08911 * 14 13 11 27 27 H 1.09000 * 110.17799 * 151.13252 * 17 15 14 28 28 H 1.09003 * 108.41978 * 31.36337 * 17 15 14 29 29 H 1.09000 * 109.69059 * 291.93101 * 18 17 15 30 30 H 1.09006 * 109.68915 * 171.35964 * 18 17 15 31 31 H 1.09000 * 109.57454 * 166.51794 * 19 18 17 32 32 H 1.08996 * 109.58445 * 46.11945 * 19 18 17 33 33 H 1.00897 * 110.99808 * 68.38464 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 -0.0052 14 6 2.4063 -7.1887 0.9268 15 6 2.2135 -7.3452 -0.5654 16 1 1.1839 -7.3662 -0.9225 17 6 3.1631 -8.2855 -1.3059 18 6 4.4111 -7.5189 -1.7507 19 6 4.9851 -6.7837 -0.5339 20 7 4.1222 -5.6396 -0.2221 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 3.1569 -3.4354 0.0009 25 1 3.2419 -7.7161 1.3871 26 1 1.5074 -7.1063 1.5377 27 1 2.6671 -8.7096 -2.1789 28 1 3.4523 -9.0877 -0.6270 29 1 4.1434 -6.7978 -2.5229 30 1 5.1516 -8.2174 -2.1406 31 1 5.9911 -6.4312 -0.7614 32 1 5.0174 -7.4603 0.3200 33 1 4.4799 -5.1213 0.5662 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885619884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:45 Heat of formation + Delta-G solvation = -46.077450 kcal Electronic energy + Delta-G solvation = -15442.637406 eV Core-core repulsion = 12888.267177 eV Total energy + Delta-G solvation = -2554.370229 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.71723 -39.31560 -36.27120 -34.51627 -34.12066 -33.03485 -29.49457 -26.58352 -25.80749 -23.87642 -22.78380 -21.49564 -19.84540 -19.24321 -18.05221 -17.13420 -16.58164 -16.31307 -16.01609 -15.58899 -15.23959 -14.66289 -14.47553 -14.29523 -14.01898 -13.91789 -13.32087 -12.93843 -12.73035 -12.51403 -12.23111 -12.13080 -11.72786 -11.52562 -11.50393 -11.13997 -10.81029 -10.70868 -9.85010 -9.33570 -8.29653 -6.46718 1.43020 1.45877 1.49576 1.57402 2.29895 2.51003 2.82994 2.95169 3.05149 3.50977 3.71724 3.83842 4.05261 4.20240 4.28077 4.51677 4.65698 4.76287 4.84682 4.91770 5.07069 5.08832 5.16892 5.20366 5.26955 5.39111 5.47512 5.65272 5.83084 5.94992 6.32957 6.63624 6.89768 7.21904 7.44357 8.82817 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045694 B = 0.006179 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.624778 B = 4530.185987 C = 4916.707728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.265 3.735 10 N -0.693 5.693 11 C 0.531 3.469 12 O -0.605 6.605 13 C 0.027 3.973 14 C -0.171 4.171 15 C -0.113 4.113 16 H 0.089 0.911 17 C -0.087 4.087 18 C -0.120 4.120 19 C 0.058 3.942 20 N -0.657 5.657 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.011 1.011 24 H 0.410 0.590 25 H 0.132 0.868 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.590 -14.924 -0.320 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.142 3.858 10 N -0.341 5.341 11 C 0.318 3.682 12 O -0.488 6.488 13 C -0.069 4.069 14 C -0.211 4.211 15 C -0.133 4.133 16 H 0.107 0.893 17 C -0.124 4.124 18 C -0.158 4.158 19 C -0.070 4.070 20 N -0.290 5.290 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.007 0.993 24 H 0.247 0.753 25 H 0.150 0.850 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.527 -14.761 -0.970 19.384 hybrid contribution -0.161 0.828 0.857 1.202 sum 12.366 -13.933 -0.114 18.629 Atomic orbital electron populations 1.70140 1.08334 1.28628 1.49951 1.26096 0.95799 1.03979 0.93720 0.85115 0.78496 0.76714 0.78635 1.19596 1.20808 1.17796 1.21593 0.94271 0.90467 1.53004 0.89885 1.18589 0.88737 0.84484 0.93983 1.46080 1.11372 1.05136 1.71508 1.20195 0.88255 0.84387 0.75404 1.90621 1.18632 1.85464 1.54047 1.20835 0.89960 0.87734 1.08403 1.23338 1.04177 1.00202 0.93401 1.22141 1.00811 0.93886 0.96420 0.89251 1.21233 0.94730 0.96307 1.00178 1.21707 0.97266 0.99270 0.97558 1.22160 0.96335 0.90815 0.97689 1.59327 0.98307 1.26178 1.45200 0.92197 0.99728 0.99350 0.75336 0.85041 0.89705 0.90246 0.89223 0.92703 0.88192 0.88090 0.93105 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.56 -31.30 9.28 25.60 0.24 -31.06 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.26 15.29 5.43 85.64 0.46 15.76 16 10 N -0.69 -31.94 5.52 -466.79 -2.58 -34.51 16 11 C 0.53 23.52 7.50 87.66 0.66 24.17 16 12 O -0.61 -32.14 16.17 -3.04 -0.05 -32.19 16 13 C 0.03 0.83 3.02 2.51 0.01 0.83 16 14 C -0.17 -4.43 9.15 29.82 0.27 -4.16 16 15 C -0.11 -3.09 5.54 -11.69 -0.06 -3.15 16 16 H 0.09 2.93 7.73 -2.39 -0.02 2.91 16 17 C -0.09 -1.60 5.94 30.54 0.18 -1.42 16 18 C -0.12 -2.05 6.07 30.72 0.19 -1.86 16 19 C 0.06 0.97 6.36 86.45 0.55 1.52 16 20 N -0.66 -16.06 5.85 -478.43 -2.80 -18.86 16 21 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 22 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 23 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 24 H 0.41 16.23 7.16 -92.71 -0.66 15.56 16 25 H 0.13 2.47 7.17 -2.39 -0.02 2.45 16 26 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 0.71 6.97 -2.39 -0.02 0.69 16 33 H 0.36 7.79 8.54 -89.70 -0.77 7.03 16 Total: -1.00 -73.07 273.96 -0.47 -73.54 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.31 Total: 22.74 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 2.96 Total: 1.29 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -5.09 Total: -110.49 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.07 -0.47 -73.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885619884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.465 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds