Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.30999 * 120.00207 * 125.00304 * 11 10 9 13 13 C 1.50693 * 120.00369 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47435 * 124.99562 * 13 12 11 15 15 C 1.34777 * 119.99870 * 180.02562 * 14 13 12 16 16 O 1.21274 * 120.00450 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99339 * 180.02562 * 15 14 13 18 18 C 1.53000 * 117.49830 * 248.74587 * 17 15 14 19 19 C 1.53003 * 117.49585 * 180.08638 * 17 15 14 20 20 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 23 23 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 24 24 H 1.08001 * 119.99875 * 304.98958 * 11 10 9 25 25 H 1.08008 * 119.99728 * 359.97438 * 12 11 10 26 26 H 1.08998 * 109.47390 * 244.99906 * 13 12 11 27 27 H 1.09003 * 109.47336 * 4.99504 * 13 12 11 28 28 H 0.97005 * 119.99636 * 359.97438 * 14 13 12 29 29 H 1.08996 * 115.55483 * 34.41338 * 17 15 14 30 30 H 1.09000 * 117.49921 * 359.97438 * 18 17 15 31 31 H 1.08998 * 117.50206 * 145.02684 * 18 17 15 32 32 H 1.09005 * 117.49882 * 214.97940 * 19 17 15 33 33 H 1.08996 * 117.49842 * 359.97400 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 1.1478 -5.7276 -0.9119 13 6 0.1688 -6.8732 -0.9063 14 7 -0.5075 -6.9442 -2.2039 15 6 -1.4327 -7.8977 -2.4304 16 8 -1.7050 -8.6973 -1.5602 17 6 -2.1279 -7.9710 -3.7654 18 6 -3.6161 -7.6184 -3.8072 19 6 -3.1695 -9.0747 -3.9598 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.6849 -3.7190 -0.8822 23 1 2.6842 -3.7101 0.8977 24 1 0.3197 -4.8601 0.7789 25 1 1.9066 -5.6695 -1.6784 26 1 0.7021 -7.8060 -0.7230 27 1 -0.5695 -6.7164 -0.1199 28 1 -0.2899 -6.3044 -2.8999 29 1 -1.5208 -7.6944 -4.6274 30 1 -4.0925 -7.3340 -2.8690 31 1 -3.9882 -7.1104 -4.6969 32 1 -3.2480 -9.5240 -4.9498 33 1 -3.3516 -9.7480 -3.1222 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497510043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = 10.261366 kcal Electronic energy + Delta-G solvation = -14243.977093 eV Core-core repulsion = 11692.049899 eV Total energy + Delta-G solvation = -2551.927194 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96584 -36.77064 -35.91770 -34.67347 -32.81552 -30.61785 -27.55280 -24.90907 -23.33693 -22.63395 -21.80814 -20.41519 -19.31189 -17.56737 -17.10521 -16.11916 -15.43138 -15.08226 -14.63603 -14.35433 -13.79390 -13.61921 -13.25512 -12.79818 -12.66979 -12.04705 -11.85798 -11.77742 -11.05971 -10.85585 -10.84279 -10.75705 -10.61156 -10.07696 -9.99113 -9.82619 -9.25815 -9.00452 -8.73050 -6.97038 -5.80216 -3.09907 2.26089 2.42367 3.29285 3.41330 3.46955 3.49293 3.68096 4.52892 4.57511 4.63034 4.67359 4.91745 4.99693 5.25023 5.38294 5.51686 5.53072 5.61643 5.72489 5.80189 5.90170 5.98613 6.11569 6.34780 6.45641 6.55328 6.88700 7.12865 7.48057 7.66676 8.17440 8.38115 9.49500 10.05688 10.40978 11.42594 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040831 B = 0.004080 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.581218 B = 6861.778933 C = 7330.958449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.106 4.106 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.719 5.719 15 C 0.540 3.460 16 O -0.547 6.547 17 C -0.195 4.195 18 C -0.152 4.152 19 C -0.150 4.150 20 H 0.255 0.745 21 H 0.385 0.615 22 H 0.026 0.974 23 H 0.031 0.969 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.405 0.595 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -15.411 -7.935 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.370 5.370 15 C 0.327 3.673 16 O -0.425 6.425 17 C -0.216 4.216 18 C -0.190 4.190 19 C -0.187 4.187 20 H 0.065 0.935 21 H 0.219 0.781 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.239 0.761 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.175 -15.858 -7.286 17.738 hybrid contribution 0.364 1.361 -0.342 1.450 sum -2.810 -14.497 -7.628 16.621 Atomic orbital electron populations 1.69681 1.05155 1.25642 1.57605 1.24769 0.95560 0.97779 1.02847 0.86088 0.78774 0.83918 0.77231 1.20496 1.21794 1.21789 1.19298 0.91117 0.84010 1.42910 0.91003 1.42312 1.05962 0.99582 1.89585 1.19827 0.92612 0.84574 0.98450 1.23340 0.98250 0.93972 0.97013 1.22689 1.00982 0.96992 1.01442 1.20324 0.93875 0.97603 0.84991 1.45994 1.40982 1.33023 1.17002 1.19677 0.79083 0.80373 0.88208 1.90682 1.64415 1.41064 1.46358 1.22204 0.93453 1.08778 0.97192 1.22960 0.93146 0.98702 1.04155 1.22955 1.00125 0.91860 1.03753 0.93488 0.78136 0.95650 0.95119 0.87273 0.86733 0.91119 0.91257 0.76086 0.85828 0.88156 0.87697 0.88003 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.66 5.59 -61.09 -0.34 -19.00 16 10 C 0.17 3.46 6.70 -5.19 -0.03 3.42 16 11 C -0.11 -1.74 9.24 -36.03 -0.33 -2.07 16 12 C -0.20 -2.77 9.24 -36.03 -0.33 -3.10 16 13 C 0.15 2.02 6.11 -5.19 -0.03 1.98 16 14 N -0.72 -8.66 5.55 -61.47 -0.34 -9.00 16 15 C 0.54 7.07 7.61 -10.99 -0.08 6.98 16 16 O -0.55 -9.14 16.26 5.56 0.09 -9.05 16 17 C -0.20 -1.88 6.19 -91.77 -0.57 -2.45 16 18 C -0.15 -1.32 10.24 -26.69 -0.27 -1.60 16 19 C -0.15 -1.31 10.05 -26.69 -0.27 -1.58 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.39 10.35 7.66 -40.82 -0.31 10.04 16 22 H 0.03 0.51 7.79 -51.93 -0.40 0.10 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 25 H 0.11 1.48 7.84 -52.48 -0.41 1.06 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 28 H 0.40 4.10 8.46 -40.82 -0.35 3.76 16 29 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -32.59 292.24 -7.43 -40.02 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.77 Total: 8.73 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.17 Total: -5.85 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.04 Total: -55.53 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.59 -7.43 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497510043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.277 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds