Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.30999 * 120.00207 * 125.00304 * 11 10 9 13 13 C 1.50693 * 120.00369 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47435 * 124.99562 * 13 12 11 15 15 C 1.34777 * 119.99870 * 180.02562 * 14 13 12 16 16 O 1.21274 * 120.00450 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99339 * 180.02562 * 15 14 13 18 18 C 1.53000 * 117.49830 * 248.74587 * 17 15 14 19 19 C 1.53003 * 117.49585 * 180.08638 * 17 15 14 20 20 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 23 23 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 24 24 H 1.08001 * 119.99875 * 304.98958 * 11 10 9 25 25 H 1.08008 * 119.99728 * 359.97438 * 12 11 10 26 26 H 1.08998 * 109.47390 * 244.99906 * 13 12 11 27 27 H 1.09003 * 109.47336 * 4.99504 * 13 12 11 28 28 H 0.97005 * 119.99636 * 359.97438 * 14 13 12 29 29 H 1.08996 * 115.55483 * 34.41338 * 17 15 14 30 30 H 1.09000 * 117.49921 * 359.97438 * 18 17 15 31 31 H 1.08998 * 117.50206 * 145.02684 * 18 17 15 32 32 H 1.09005 * 117.49882 * 214.97940 * 19 17 15 33 33 H 1.08996 * 117.49842 * 359.97400 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 1.1478 -5.7276 -0.9119 13 6 0.1688 -6.8732 -0.9063 14 7 -0.5075 -6.9442 -2.2039 15 6 -1.4327 -7.8977 -2.4304 16 8 -1.7050 -8.6973 -1.5602 17 6 -2.1279 -7.9710 -3.7654 18 6 -3.6161 -7.6184 -3.8072 19 6 -3.1695 -9.0747 -3.9598 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.6849 -3.7190 -0.8822 23 1 2.6842 -3.7101 0.8977 24 1 0.3197 -4.8601 0.7789 25 1 1.9066 -5.6695 -1.6784 26 1 0.7021 -7.8060 -0.7230 27 1 -0.5695 -6.7164 -0.1199 28 1 -0.2899 -6.3044 -2.8999 29 1 -1.5208 -7.6944 -4.6274 30 1 -4.0925 -7.3340 -2.8690 31 1 -3.9882 -7.1104 -4.6969 32 1 -3.2480 -9.5240 -4.9498 33 1 -3.3516 -9.7480 -3.1222 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497510043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -12.411586 kcal Electronic energy + Delta-G solvation = -14244.960266 eV Core-core repulsion = 11692.049899 eV Total energy + Delta-G solvation = -2552.910367 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96935 -37.88391 -37.05757 -36.15602 -34.40527 -32.42719 -28.98897 -26.42329 -24.72629 -23.37658 -23.23983 -21.48475 -20.53097 -19.13433 -18.44877 -17.19783 -16.70488 -16.44464 -16.01184 -15.40684 -15.32837 -15.14671 -14.84554 -14.24730 -13.55089 -13.51072 -13.33581 -12.90169 -12.76187 -12.44237 -12.16198 -12.00665 -11.79526 -11.54139 -11.45513 -11.12217 -10.99131 -10.37445 -9.99377 -9.02623 -7.97081 -5.27256 1.03705 1.45154 1.48438 1.49298 1.59640 2.31992 2.56609 2.93459 3.37071 3.69455 3.76248 3.88986 3.98779 4.07090 4.21931 4.22938 4.44827 4.64137 4.68768 4.74941 4.90984 4.93347 4.99088 5.03454 5.22723 5.34104 5.47119 5.63797 5.81521 6.25194 6.51497 7.18783 7.31195 8.04898 8.28934 9.26703 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040831 B = 0.004080 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.581218 B = 6861.778933 C = 7330.958449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.161 4.161 13 C 0.156 3.844 14 N -0.713 5.713 15 C 0.534 3.466 16 O -0.591 6.591 17 C -0.201 4.201 18 C -0.148 4.148 19 C -0.148 4.148 20 H 0.252 0.748 21 H 0.374 0.626 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.416 0.584 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -15.731 -9.534 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.388 5.388 10 C 0.048 3.952 11 C -0.152 4.152 12 C -0.180 4.180 13 C 0.033 3.967 14 N -0.364 5.364 15 C 0.322 3.678 16 O -0.472 6.472 17 C -0.221 4.221 18 C -0.186 4.186 19 C -0.185 4.185 20 H 0.061 0.939 21 H 0.206 0.794 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.124 0.876 25 H 0.150 0.850 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.253 0.747 29 H 0.171 0.829 30 H 0.101 0.899 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.330 -16.194 -8.903 18.626 hybrid contribution 0.133 1.337 0.145 1.352 sum -2.197 -14.856 -8.757 17.385 Atomic orbital electron populations 1.69836 1.06731 1.26154 1.59343 1.25624 0.96439 1.01276 1.03429 0.85025 0.78253 0.79447 0.76722 1.18869 1.21811 1.22049 1.19723 0.91658 0.85200 1.41504 0.90334 1.42551 1.05713 1.00969 1.89554 1.19910 0.93126 0.83632 0.98547 1.23013 0.98834 0.94302 0.99003 1.22766 1.00018 0.95359 0.99829 1.20234 0.93581 0.97502 0.85411 1.45930 1.40601 1.33068 1.16773 1.20331 0.78769 0.79599 0.89111 1.90662 1.65730 1.42711 1.48068 1.22299 0.93983 1.09894 0.95962 1.23050 0.92155 0.98900 1.04471 1.23030 0.99418 0.91615 1.04428 0.93912 0.79423 0.94762 0.95176 0.87581 0.85009 0.90337 0.92508 0.74746 0.82923 0.89877 0.85104 0.85202 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.46 13.06 21.65 0.28 -59.17 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.75 -38.15 5.59 -347.18 -1.94 -40.09 16 10 C 0.17 6.83 6.70 85.63 0.57 7.41 16 11 C -0.13 -4.21 9.24 25.65 0.24 -3.97 16 12 C -0.16 -4.10 9.24 25.65 0.24 -3.86 16 13 C 0.16 3.86 6.11 85.63 0.52 4.38 16 14 N -0.71 -16.01 5.55 -466.79 -2.59 -18.60 16 15 C 0.53 13.43 7.61 87.66 0.67 14.09 16 16 O -0.59 -19.79 16.26 -3.01 -0.05 -19.84 16 17 C -0.20 -3.44 6.19 -11.54 -0.07 -3.51 16 18 C -0.15 -2.30 10.24 30.62 0.31 -1.98 16 19 C -0.15 -2.32 10.05 30.62 0.31 -2.02 16 20 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 21 H 0.37 20.44 7.66 -92.71 -0.71 19.73 16 22 H 0.03 1.30 7.79 -2.38 -0.02 1.28 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.11 3.44 7.84 -2.91 -0.02 3.42 16 25 H 0.13 2.98 7.84 -2.91 -0.02 2.95 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 28 H 0.42 7.44 8.46 -92.70 -0.78 6.66 16 29 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.09 1.74 7.67 -2.39 -0.02 1.72 16 Total: -1.00 -70.03 292.24 1.44 -68.59 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.39 Total: 27.78 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 4.09 Total: -6.43 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -4.25 Total: -117.86 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.03 1.44 -68.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497510043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.176 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds