Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46908 * 110.99595 * 2 1 4 4 C 1.50693 * 109.47182 * 72.58463 * 3 2 1 5 5 H 1.07998 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99803 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99717 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00216 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.46848 * 89.99658 * 8 6 4 10 10 H 1.48493 * 109.47028 * 210.00154 * 8 6 4 11 11 H 1.48502 * 109.46816 * 329.99900 * 8 6 4 12 12 C 1.46892 * 111.00185 * 236.04556 * 2 1 3 13 13 H 1.08998 * 109.47606 * 184.30850 * 12 2 1 14 14 C 1.53003 * 109.47240 * 304.30844 * 12 2 1 15 15 N 1.46897 * 109.47111 * 303.51346 * 14 12 2 16 16 C 1.50698 * 109.47314 * 64.31113 * 12 2 1 17 17 C 1.34519 * 125.79217 * 132.19720 * 16 12 2 18 18 C 1.41383 * 106.84112 * 179.97438 * 17 16 12 19 19 C 1.34519 * 106.84172 * 0.02562 * 18 17 16 20 20 O 1.34306 * 125.78755 * 311.88880 * 16 12 2 21 21 H 1.09008 * 109.47072 * 176.55438 * 1 2 3 22 22 H 1.09002 * 109.47264 * 296.55114 * 1 2 3 23 23 H 1.09001 * 109.47716 * 56.55667 * 1 2 3 24 24 H 1.09006 * 109.46466 * 192.58604 * 3 2 1 25 25 H 1.09002 * 109.46925 * 312.58287 * 3 2 1 26 26 H 0.97008 * 119.99393 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46629 * 63.51607 * 14 12 2 28 28 H 1.09005 * 109.47276 * 183.50953 * 14 12 2 29 29 H 1.00895 * 111.00230 * 62.66808 * 15 14 12 30 30 H 1.00900 * 110.99659 * 186.62709 * 15 14 12 31 31 H 1.08000 * 126.57859 * 0.03325 * 17 16 12 32 32 H 1.07996 * 126.57852 * 179.97438 * 18 17 16 33 33 H 1.08000 * 125.79120 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.7783 1.9929 1.3556 5 1 1.2979 1.4256 2.1390 6 6 2.1941 3.2853 1.5961 7 7 2.0052 3.8274 2.7794 8 14 3.0258 4.2663 0.2414 9 1 1.9990 5.0053 -0.5363 10 1 3.9803 5.2313 0.8436 11 1 3.7592 3.3419 -0.6602 12 6 1.9954 -0.7659 -1.1375 13 1 3.0823 -0.8143 -1.0712 14 6 1.4192 -2.1830 -1.1087 15 7 1.7327 -2.8129 0.1808 16 6 1.6005 -0.0891 -2.4247 17 6 2.4209 0.1789 -3.4565 18 6 1.6384 0.8148 -4.4476 19 6 0.3866 0.8978 -3.9620 20 8 0.3684 0.3435 -2.7387 21 1 -0.3634 -1.0259 -0.0618 22 1 -0.3634 0.4594 0.9193 23 1 -0.3634 0.5663 -0.8575 24 1 3.0619 1.3513 -0.2240 25 1 1.4763 1.9599 -0.7567 26 1 2.2974 4.7368 2.9485 27 1 0.3377 -2.1381 -1.2378 28 1 1.8573 -2.7700 -1.9159 29 1 1.3009 -2.3117 0.9426 30 1 1.4582 -3.7839 0.1851 31 1 3.4749 -0.0488 -3.5167 32 1 1.9802 1.1671 -5.4095 33 1 -0.4610 1.3317 -4.4714 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043334583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = 30.189802 kcal Electronic energy + Delta-G solvation = -15985.198961 eV Core-core repulsion = 13434.135929 eV Total energy + Delta-G solvation = -2551.063033 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.34978 -37.67975 -33.81733 -32.76693 -32.24848 -30.19437 -27.93787 -26.66774 -24.72796 -21.74245 -21.46584 -20.93140 -19.43300 -17.08633 -16.86344 -15.91411 -15.69595 -15.03784 -14.53747 -14.29846 -13.82104 -13.47236 -13.13113 -12.60376 -12.46142 -12.22533 -11.98487 -11.75028 -11.45199 -11.09821 -11.02832 -10.61435 -10.18955 -9.81886 -9.66923 -9.32180 -8.55873 -8.44826 -8.19508 -7.49837 -6.03210 -3.99884 2.00914 2.86173 3.25696 3.30388 3.37718 3.41809 4.44538 4.64509 4.77151 5.14285 5.24183 5.28882 5.30513 5.41087 5.45268 5.75053 5.97525 6.00586 6.05522 6.17202 6.26010 6.43665 6.68480 6.73460 6.88360 6.94649 7.35635 7.40158 7.61663 7.77018 7.83278 7.97019 8.65675 9.05699 9.58917 11.09913 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.011023 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.851237 B = 2539.448206 C = 3300.834501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.509 5.509 3 C 0.165 3.835 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.872 3.128 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.159 3.841 13 H 0.112 0.888 14 C 0.073 3.927 15 N -0.841 5.841 16 C -0.021 4.021 17 C -0.218 4.218 18 C -0.214 4.214 19 C -0.057 4.057 20 O -0.165 6.165 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.027 0.973 25 H -0.012 1.012 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.357 0.643 30 H 0.333 0.667 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -9.360 -12.373 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.230 5.230 3 C 0.039 3.961 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.699 3.301 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.049 3.951 13 H 0.130 0.870 14 C -0.058 4.058 15 N -0.372 5.372 16 C -0.074 4.074 17 C -0.238 4.238 18 C -0.233 4.233 19 C -0.125 4.125 20 O -0.060 6.060 21 H 0.065 0.935 22 H 0.096 0.904 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.006 0.994 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.172 0.828 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.819 -9.268 -11.773 15.093 hybrid contribution -0.659 1.179 -1.711 2.180 sum -2.478 -8.089 -13.484 15.918 Atomic orbital electron populations 1.22512 0.88281 0.99575 1.02050 1.62161 1.07418 1.17043 1.36413 1.20195 0.94816 0.83498 0.97569 1.20997 1.39036 0.98000 0.96311 0.90071 1.24865 0.95639 0.97440 0.95270 1.69896 1.47789 1.14890 1.21382 0.86904 0.80015 0.80438 0.82708 1.20464 1.21113 1.19121 1.20831 1.00857 0.91965 0.81473 0.87001 1.21770 0.97680 0.93693 0.92694 1.58488 1.68225 1.05787 1.04670 1.24007 0.82363 1.02050 0.99028 1.21607 1.00922 1.06795 0.94512 1.21745 0.93845 1.06224 1.01537 1.24023 0.99815 1.03498 0.85188 1.84205 1.31668 1.59158 1.31000 0.93465 0.90419 0.94935 0.95518 0.99450 0.92710 0.95237 0.91158 0.82798 0.85576 0.83820 0.83969 0.78741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.35 60.06 0.50 0.96 16 2 N -0.51 -10.51 4.03 -237.73 -0.96 -11.47 16 3 C 0.17 4.09 3.15 -4.97 -0.02 4.07 16 4 C -0.51 -14.51 9.21 -34.44 -0.32 -14.82 16 5 H 0.08 2.51 7.78 -52.49 -0.41 2.11 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 8 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 12 C 0.16 2.78 2.53 -68.87 -0.17 2.61 16 13 H 0.11 1.99 8.06 -51.93 -0.42 1.57 16 14 C 0.07 1.05 5.69 -3.82 -0.02 1.02 16 15 N -0.84 -11.61 9.56 -10.37 -0.10 -11.71 16 16 C -0.02 -0.37 4.74 -35.62 -0.17 -0.54 16 17 C -0.22 -3.52 10.79 -39.70 -0.43 -3.95 16 18 C -0.21 -3.12 10.91 -39.70 -0.43 -3.55 16 19 C -0.06 -0.83 12.09 29.42 0.36 -0.48 16 20 O -0.16 -2.86 7.98 5.69 0.05 -2.82 16 21 H 0.05 0.76 5.69 -51.92 -0.30 0.47 16 22 H 0.08 1.62 7.41 -51.93 -0.39 1.23 16 23 H 0.03 0.64 5.55 -51.93 -0.29 0.35 16 24 H 0.03 0.68 7.01 -51.93 -0.36 0.32 16 25 H -0.01 -0.31 6.98 -51.93 -0.36 -0.68 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.03 0.42 6.39 -51.93 -0.33 0.09 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.36 5.38 7.96 -39.29 -0.31 5.07 16 30 H 0.33 3.63 9.08 -39.29 -0.36 3.27 16 31 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 32 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -31.75 269.23 -6.03 -37.78 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.38 Total: 6.51 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.80 Total: -12.74 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.28 Total: -50.27 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.05 Total: -2.82 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.75 -6.03 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043334583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.974 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds