Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46908 * 110.99595 * 2 1 4 4 C 1.50693 * 109.47182 * 72.58463 * 3 2 1 5 5 H 1.07998 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99803 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99717 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00216 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.46848 * 89.99658 * 8 6 4 10 10 H 1.48493 * 109.47028 * 210.00154 * 8 6 4 11 11 H 1.48502 * 109.46816 * 329.99900 * 8 6 4 12 12 C 1.46892 * 111.00185 * 236.04556 * 2 1 3 13 13 H 1.08998 * 109.47606 * 184.30850 * 12 2 1 14 14 C 1.53003 * 109.47240 * 304.30844 * 12 2 1 15 15 N 1.46897 * 109.47111 * 303.51346 * 14 12 2 16 16 C 1.50698 * 109.47314 * 64.31113 * 12 2 1 17 17 C 1.34519 * 125.79217 * 132.19720 * 16 12 2 18 18 C 1.41383 * 106.84112 * 179.97438 * 17 16 12 19 19 C 1.34519 * 106.84172 * 0.02562 * 18 17 16 20 20 O 1.34306 * 125.78755 * 311.88880 * 16 12 2 21 21 H 1.09008 * 109.47072 * 176.55438 * 1 2 3 22 22 H 1.09002 * 109.47264 * 296.55114 * 1 2 3 23 23 H 1.09001 * 109.47716 * 56.55667 * 1 2 3 24 24 H 1.09006 * 109.46466 * 192.58604 * 3 2 1 25 25 H 1.09002 * 109.46925 * 312.58287 * 3 2 1 26 26 H 0.97008 * 119.99393 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46629 * 63.51607 * 14 12 2 28 28 H 1.09005 * 109.47276 * 183.50953 * 14 12 2 29 29 H 1.00895 * 111.00230 * 62.66808 * 15 14 12 30 30 H 1.00900 * 110.99659 * 186.62709 * 15 14 12 31 31 H 1.08000 * 126.57859 * 0.03325 * 17 16 12 32 32 H 1.07996 * 126.57852 * 179.97438 * 18 17 16 33 33 H 1.08000 * 125.79120 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.7783 1.9929 1.3556 5 1 1.2979 1.4256 2.1390 6 6 2.1941 3.2853 1.5961 7 7 2.0052 3.8274 2.7794 8 14 3.0258 4.2663 0.2414 9 1 1.9990 5.0053 -0.5363 10 1 3.9803 5.2313 0.8436 11 1 3.7592 3.3419 -0.6602 12 6 1.9954 -0.7659 -1.1375 13 1 3.0823 -0.8143 -1.0712 14 6 1.4192 -2.1830 -1.1087 15 7 1.7327 -2.8129 0.1808 16 6 1.6005 -0.0891 -2.4247 17 6 2.4209 0.1789 -3.4565 18 6 1.6384 0.8148 -4.4476 19 6 0.3866 0.8978 -3.9620 20 8 0.3684 0.3435 -2.7387 21 1 -0.3634 -1.0259 -0.0618 22 1 -0.3634 0.4594 0.9193 23 1 -0.3634 0.5663 -0.8575 24 1 3.0619 1.3513 -0.2240 25 1 1.4763 1.9599 -0.7567 26 1 2.2974 4.7368 2.9485 27 1 0.3377 -2.1381 -1.2378 28 1 1.8573 -2.7700 -1.9159 29 1 1.3009 -2.3117 0.9426 30 1 1.4582 -3.7839 0.1851 31 1 3.4749 -0.0488 -3.5167 32 1 1.9802 1.1671 -5.4095 33 1 -0.4610 1.3317 -4.4714 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043334583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = 5.678164 kcal Electronic energy + Delta-G solvation = -15986.261866 eV Core-core repulsion = 13434.135929 eV Total energy + Delta-G solvation = -2552.125937 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.54908 -39.16510 -35.42701 -34.19629 -33.94052 -31.53537 -29.82011 -27.96837 -26.38976 -23.30107 -22.65784 -22.45016 -20.76739 -19.01333 -18.33045 -17.22046 -17.01084 -16.33179 -16.30064 -15.91731 -15.38911 -14.79836 -14.65123 -14.32442 -13.78617 -13.53103 -13.45942 -13.37218 -13.01468 -12.68011 -12.57574 -12.39583 -11.92428 -11.83277 -11.50404 -10.84093 -10.80410 -9.60327 -9.39433 -9.10082 -8.30029 -6.32085 0.81985 1.29801 1.31565 1.42646 1.71448 2.09262 2.31312 3.02673 3.21760 3.51764 4.03774 4.07468 4.15660 4.22851 4.26680 4.37728 4.66499 4.73427 4.79494 4.85599 4.90869 4.97486 5.02296 5.12922 5.30380 5.52351 5.61371 5.90721 6.22995 6.25272 6.30501 6.58349 6.73315 6.74115 7.30948 8.86483 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.011023 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.851237 B = 2539.448206 C = 3300.834501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.519 5.519 3 C 0.183 3.817 4 C -0.511 4.511 5 H 0.043 0.957 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.939 3.061 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.255 1.255 12 C 0.160 3.840 13 H 0.105 0.895 14 C 0.083 3.917 15 N -0.847 5.847 16 C -0.050 4.050 17 C -0.223 4.223 18 C -0.222 4.222 19 C -0.058 4.058 20 O -0.184 6.184 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.029 0.971 24 H 0.022 0.978 25 H -0.021 1.021 26 H 0.267 0.733 27 H 0.032 0.968 28 H 0.090 0.910 29 H 0.349 0.651 30 H 0.350 0.650 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 -9.754 -14.901 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.240 5.240 3 C 0.056 3.944 4 C -0.549 4.549 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.585 5.585 8 Si 0.763 3.237 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.179 1.179 12 C 0.050 3.950 13 H 0.123 0.877 14 C -0.049 4.049 15 N -0.379 5.379 16 C -0.102 4.102 17 C -0.243 4.243 18 C -0.241 4.241 19 C -0.125 4.125 20 O -0.081 6.081 21 H 0.096 0.904 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.040 0.960 25 H -0.003 1.003 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.174 0.826 32 H 0.188 0.812 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.516 -9.705 -14.315 17.361 hybrid contribution -0.801 1.229 -0.928 1.736 sum -2.317 -8.476 -15.243 17.594 Atomic orbital electron populations 1.22407 0.87508 1.01178 1.00402 1.62007 1.08158 1.14844 1.39036 1.19821 0.94434 0.85564 0.94599 1.21228 1.38280 0.98103 0.97335 0.93884 1.25734 0.96414 0.98666 0.97698 1.70036 1.49271 1.15563 1.23645 0.85827 0.79166 0.78966 0.79701 1.19711 1.20229 1.17872 1.20811 1.00511 0.93057 0.80648 0.87708 1.21700 0.97694 0.92062 0.93414 1.58463 1.68345 1.06906 1.04184 1.23859 0.82997 1.03881 0.99488 1.21954 1.01621 1.06085 0.94604 1.22124 0.93617 1.05944 1.02398 1.24849 1.01295 1.02252 0.84142 1.84161 1.31747 1.59761 1.32418 0.90391 0.93123 0.95300 0.95992 1.00332 0.92415 0.94989 0.89191 0.83732 0.83574 0.82578 0.81220 0.75174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.26 8.35 127.69 1.07 2.33 16 2 N -0.52 -21.41 4.03 -906.04 -3.65 -25.07 16 3 C 0.18 9.07 3.15 85.55 0.27 9.34 16 4 C -0.51 -30.11 9.21 25.60 0.24 -29.88 16 5 H 0.04 2.79 7.78 -2.91 -0.02 2.77 16 6 C 0.01 0.74 5.47 84.65 0.46 1.20 16 7 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 8 Si 0.94 45.61 27.47 68.60 1.88 47.49 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 12 C 0.16 5.39 2.53 44.17 0.11 5.50 16 13 H 0.11 3.64 8.06 -2.39 -0.02 3.62 16 14 C 0.08 2.20 5.69 86.30 0.49 2.69 16 15 N -0.85 -22.09 9.56 -186.71 -1.78 -23.87 16 16 C -0.05 -1.65 4.74 24.83 0.12 -1.53 16 17 C -0.22 -6.64 10.79 22.19 0.24 -6.41 16 18 C -0.22 -5.74 10.91 22.19 0.24 -5.50 16 19 C -0.06 -1.52 12.09 66.97 0.81 -0.71 16 20 O -0.18 -6.06 7.98 -2.55 -0.02 -6.08 16 21 H 0.08 2.45 5.69 -2.38 -0.01 2.44 16 22 H 0.05 2.17 7.41 -2.39 -0.02 2.16 16 23 H 0.03 1.13 5.55 -2.39 -0.01 1.12 16 24 H 0.02 1.11 7.01 -2.38 -0.02 1.09 16 25 H -0.02 -1.07 6.98 -2.39 -0.02 -1.09 16 26 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 27 H 0.03 0.84 6.39 -2.39 -0.02 0.83 16 28 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.35 10.23 7.96 -89.70 -0.71 9.51 16 30 H 0.35 6.92 9.08 -89.69 -0.81 6.11 16 31 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 32 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.23 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -68.90 269.23 0.31 -68.58 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.46 Total: 21.29 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.05 Total: -22.96 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -5.14 Total: -108.33 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.02 Total: -6.08 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -68.90 0.31 -68.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043334583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.261 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds